Rh1DG248000

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000347
Physical Location & Seq
Forward (+)
46235269 .. 46237071
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG248000.1

Sequence Viewer

Length: 720 bp
ATGTTCCTCGCCGGAAAGATCCTCGACGACGGCTTGATGAGCATTTCCAAGACGGACGGTGTTTTACTGGCCTCCAAAGCCACTTTCCCGTCTACTGTGTACACAACTCTGTCGCTGCCGATTTCGTCCTTCACACAATTTCGCTGCCGCCAGGACCGCGTGCTCCGCCTCCACCTCGGCCTCTTGGAGCACCGAATCAACGCCACCGTCGGCGGCTATGATTCTGACGACGACGTTTCCATACGCTTCTCCGGAGAGAGCACCAACTACAACACCTTGATCTATGGCGTCAGGGACGGTGGCGTGGACGGTGCTGAACTGGAAACCTCTGAAATTGCACTGATGAACTCGAAGCCGGGTCGGGTGGTTGGGCATGTGTCGAAGTATCAACTGAGCATTGAGATGCCGGCGGAGACTTTTATGCAACTCATCGATTTTCTGAGCTTGTATGGATCTGCAGTTAAGGCCACCGTGACATATACTCAAATCATGTTCTGTGTTGTCAATGAGGTTGTTTTGAGGGCAGAGGCTGAGGGATACAAGATTGTGCATTCCGCAGGTAAATATCCATATTTGTTGGAATTTGGTCTCGATCAAAAGAGTGCATTCCTGAATGCGGCTATTCTATCAAACATAGTTAGGCTGCACCAGCTTACTGATTCACGCACCGTGTTGGAGGTACCTATTAGTGCACTCGGCTGCCTCATGTTTTACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

239

Amino Acids

26.29

Weight (kDa)

5.53

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 548
Acc65I GGTACC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 679
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 7 cut(s) 148, 157, 166, 213, 410, 555, 617
AclWI GGATC 2 cut(s) 13, 460
AcsI RAATTY 1 cut(s) 581
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 2 cut(s) 101, 681
AfiI CCNNNNNNNGG 1 cut(s) 616
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 2 cut(s) 444, 652
AluI AGCT 2 cut(s) 444, 652
Alw21I GWGCWC 4 cut(s) 165, 192, 263, 694
Alw26I GTCTC 2 cut(s) 407, 593
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 2 cut(s) 13, 460
AlwNI CAGNNNCTG 1 cut(s) 530
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 3 cut(s) 69, 178, 465
ApaLI GTGCAC 1 cut(s) 690
ApeKI GCWGC 4 cut(s) 115, 144, 643, 699
ApoI RAATTY 1 cut(s) 581
Asp718I GGTACC 1 cut(s) 679
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 679
Bbv12I GWGCWC 4 cut(s) 165, 192, 263, 694
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 4 cut(s) 102, 131, 630, 686
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 1 cut(s) 530
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 407, 593
BfmI CTRYAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 548
BfuI GTATCC 1 cut(s) 530
BisI GCNGC 7 cut(s) 116, 145, 148, 214, 618, 644, 700
BlsI GCNGC 7 cut(s) 117, 146, 149, 215, 619, 645, 701
Bme1390I CCNGG 2 cut(s) 152, 357
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 2 cut(s) 152, 357
BmsI GCATC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 72, 324
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 3 cut(s) 383, 431, 522
BseNI ACTGG 2 cut(s) 72, 324
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 4 cut(s) 102, 131, 630, 686
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 71, 180, 467
BshNI GGYRCC 1 cut(s) 679
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 4 cut(s) 165, 192, 263, 694
BsiSI CCGG 4 cut(s) 12, 252, 356, 407
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 407, 593
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 3 cut(s) 550, 605, 619
BsnI GGCC 3 cut(s) 71, 180, 467
Bso31I GGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 4 cut(s) 165, 192, 263, 694
Bsp13I TCCGGA 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 4 cut(s) 18, 279, 452, 592
BspACI CCGC 7 cut(s) 148, 157, 166, 213, 410, 555, 617
BspANI GGCC 3 cut(s) 71, 180, 467
BspCNI CTCAG 3 cut(s) 384, 432, 523
BspDI ATCGAT 1 cut(s) 432
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 548
BspPI GGATC 2 cut(s) 13, 460
BspT107I GGYRCC 1 cut(s) 679
BspTNI GGTCTC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 406
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 72, 324
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 4 cut(s) 18, 279, 452, 592
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 7 cut(s) 59, 97, 208, 299, 311, 472, 670
BstACI GRCGYC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 161, 408
BstDEI CTNAG 4 cut(s) 392, 440, 531, 717
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 4 cut(s) 21, 282, 455, 595
BstMAI GTCTC 2 cut(s) 407, 593
BstMBI GATC 4 cut(s) 18, 279, 452, 592
BstMWI GCNNNNNNNGC 6 cut(s) 39, 77, 156, 165, 464, 649
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 150, 355
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 694
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 102, 131, 630, 686
BstX2I RGATCY 2 cut(s) 18, 452
BstYI RGATCY 2 cut(s) 18, 452
Bsu15I ATCGAT 1 cut(s) 432
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 3 cut(s) 71, 180, 467
BsuTUI ATCGAT 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 2 cut(s) 161, 408
CaiI CAGNNNCTG 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 432
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 100, 680
CviAII CATG 3 cut(s) 374, 490, 706
CviQI GTAC 2 cut(s) 100, 680
DdeI CTNAG 4 cut(s) 392, 440, 531, 717
DpnI GATC 4 cut(s) 20, 281, 454, 594
DpnII GATC 4 cut(s) 18, 279, 452, 592
EciI GGCGGA 2 cut(s) 155, 425
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 377, 493, 709
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 373, 489, 705
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 7 cut(s) 116, 145, 148, 214, 618, 644, 700
Fsp4HI GCNGC 7 cut(s) 116, 145, 148, 214, 618, 644, 700
GluI GCNGC 7 cut(s) 116, 145, 148, 214, 618, 644, 700
HaeIII GGCC 3 cut(s) 71, 180, 467
HapII CCGG 4 cut(s) 12, 252, 356, 407
HgaI GACGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 3 cut(s) 377, 493, 709
HinfI GANTC 3 cut(s) 195, 221, 659
HpaII CCGG 4 cut(s) 12, 252, 356, 407
Hpy166II GTNNAC 5 cut(s) 93, 100, 102, 307, 692
Hpy188I TCNGA 3 cut(s) 226, 331, 441
Hpy188III TCNNGA 3 cut(s) 252, 590, 610
Hpy8I GTNNAC 5 cut(s) 93, 100, 102, 307, 692
Hpy99I CGWCG 5 cut(s) 29, 32, 212, 233, 236
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 7 cut(s) 59, 97, 208, 299, 311, 472, 670
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 7 cut(s) 338, 424, 458, 550, 605, 646, 692
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 77, 156, 165, 464, 649
HpyF3I CTNAG 4 cut(s) 392, 440, 531, 717
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 3 cut(s) 377, 493, 709
Kpn2I TCCGGA 1 cut(s) 251
KpnI GGTACC 1 cut(s) 683
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Kzo9I GATC 4 cut(s) 18, 279, 452, 592
LmnI GCTCC 2 cut(s) 168, 187
Lsp1109I GCAGC 4 cut(s) 102, 131, 630, 686
LweI GCATC 1 cut(s) 393
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 472
MalI GATC 4 cut(s) 20, 281, 454, 594
MboI GATC 4 cut(s) 18, 279, 452, 592
MflI RGATCY 2 cut(s) 18, 452
MhlI GDGCHC 4 cut(s) 165, 192, 263, 694
MluCI AATT 3 cut(s) 137, 333, 581
MmeI TCCRAC 2 cut(s) 558, 654
MroI TCCGGA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 406
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 4 cut(s) 12, 252, 356, 407
MspR9I CCNGG 2 cut(s) 152, 357
Mva1269I GAATGC 3 cut(s) 550, 605, 619
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 6 cut(s) 39, 77, 156, 165, 464, 649
NaeI GCCGGC 1 cut(s) 408
NciI CCSGG 1 cut(s) 357
NdeII GATC 4 cut(s) 18, 279, 452, 592
NgoMIV GCCGGC 1 cut(s) 406
NlaIII CATG 3 cut(s) 377, 493, 709
NlaIV GGNNCC 1 cut(s) 681
NmeAIII GCCGAG 2 cut(s) 156, 675
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 377
PctI GAATGC 3 cut(s) 550, 605, 619
PdiI GCCGGC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 195, 221, 659
PkrI GCNGC 7 cut(s) 117, 146, 149, 215, 619, 645, 701
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 2 cut(s) 18, 452
RsaI GTAC 2 cut(s) 101, 681
RsaNI GTAC 2 cut(s) 100, 680
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 7 cut(s) 116, 145, 148, 214, 618, 644, 700
Sau3AI GATC 4 cut(s) 18, 279, 452, 592
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 152, 357
SduI GDGCHC 4 cut(s) 165, 192, 263, 694
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 3 cut(s) 137, 333, 581
SsiI CCGC 7 cut(s) 148, 157, 166, 213, 410, 555, 617
StyD4I CCNGG 2 cut(s) 150, 355
TaaI ACNGT 7 cut(s) 59, 97, 208, 299, 311, 472, 670
TaiI ACGT 1 cut(s) 237
TaqI TCGA 5 cut(s) 24, 350, 380, 432, 591
TasI AATT 3 cut(s) 137, 333, 581
TatI WGTACW 1 cut(s) 99
TauI GCSGC 3 cut(s) 150, 216, 620
TfiI GAWTC 3 cut(s) 195, 221, 659
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 115, 144, 643, 699
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 345
VneI GTGCAC 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 581
XceI RCATGY 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.