Rh1BG222600

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000347
Physical Location & Seq
Reverse (-)
34168276 .. 34171583
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG222600.1

Sequence Viewer

Length: 615 bp
ATGACCACCGTGCTGGCGGTGCCGCGCTCCTCCATGTCGAGATTCTGGTGCTCCAAGAGCTGCCGCACTCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAGCGCTGGGGATTCGGTTACTCTTTATGGTGATGAACAAGCTGTTGATAGGATTTTCTGTGAAATTGGGGATGATGATGGCATTAAATACTCCTCTACACTGCCAGTGATTTCATGGTGGGATCAGATTCAGATGGACCTAGGTTTCATAGGATATGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTTGTTCTGTTATTGCTGAATTGGATTCTCATGGGTTTAAAGTTCATGCCAAAGTATCAGAAACCCAAGTTGTGTTCCGGGTAGTGAATAACAAGATTGTCTTCAAAAGAAAGCCTGGGATTTGCGAGATTGAGAGTGTTGGTGATAGATATCCGTTTGAATTAAAGTTTGATCTCCAGCACAAGAGTGCGTTTCTCAATGCTGCCAGACTGTCAAAGATGGTATGGATACTTAAGTCTGTGGAGTTGATCACTGTGCTCAGCTTCCCTATTCTTGGCCTGGGTAACCTCATGTTTACGGCACCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

204

Amino Acids

23.06

Weight (kDa)

7.58

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 604
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 17, 23, 64
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 72
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 578
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 3 cut(s) 94, 409, 464
AjnI CCWGG 2 cut(s) 418, 582
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 3 cut(s) 60, 152, 567
AluI AGCT 3 cut(s) 60, 152, 567
Alw21I GWGCWC 2 cut(s) 53, 564
AlwI GGATC 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 60, 111, 506
AspA2I CCTAGG 1 cut(s) 250
AspLEI GCGC 2 cut(s) 27, 116
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 152, 458
AvaII GGWCC 1 cut(s) 247
AvrII CCTAGG 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 524, 557
BanI GGYRCC 2 cut(s) 19, 604
BbsI GAAGAC 2 cut(s) 285, 397
Bbv12I GWGCWC 2 cut(s) 53, 564
BbvI GCAGC 3 cut(s) 47, 123, 493
BccI CCATC 3 cut(s) 182, 238, 517
BciT130I CCWGG 2 cut(s) 420, 584
BciVI GTATCC 1 cut(s) 525
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 1 cut(s) 383
BfaI CTAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 536
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 5 cut(s) 23, 61, 64, 112, 507
BlnI CCTAGG 1 cut(s) 250
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 5 cut(s) 24, 62, 65, 113, 508
Bme1390I CCNGG 3 cut(s) 383, 420, 584
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 21, 606
BmrFI CCNGG 3 cut(s) 383, 420, 584
BpiI GAAGAC 2 cut(s) 285, 397
BpmI CTGGAG 1 cut(s) 464
Bpu1102I GCTNAGC 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 250, 419, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 108, 215
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 2 cut(s) 420, 584
BseDI CCNNGG 3 cut(s) 250, 419, 583
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMII CTCAG 1 cut(s) 577
BseNI ACTGG 2 cut(s) 108, 215
BseRI GAGGAG 2 cut(s) 19, 193
BseXI GCAGC 3 cut(s) 47, 123, 493
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 2 cut(s) 19, 604
BsiHKAI GWGCWC 2 cut(s) 53, 564
BsiSI CCGG 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 578
BsnI GGCC 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 53, 564
Bsp143I GATC 3 cut(s) 232, 475, 552
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 3 cut(s) 17, 23, 64
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 1 cut(s) 576
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 21, 606
BspPI GGATC 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 19, 604
BspTI CTTAAG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 108, 215
BssECI CCNNGG 3 cut(s) 250, 419, 583
BssMI GATC 3 cut(s) 232, 475, 552
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 420, 584
Bst4CI ACNGT 3 cut(s) 10, 516, 559
BstAFI CTTAAG 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 563
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 27, 116
BstKTI GATC 3 cut(s) 235, 478, 555
BstMBI GATC 3 cut(s) 232, 475, 552
BstMWI GCNNNNNNNGC 2 cut(s) 19, 57
BstNI CCWGG 2 cut(s) 420, 584
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 3 cut(s) 381, 418, 582
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 47, 123, 493
BstV2I GAAGAC 2 cut(s) 285, 397
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 3 cut(s) 209, 222, 555
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 2 cut(s) 27, 116
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 5 cut(s) 34, 225, 335, 350, 595
CviJI RGCY 7 cut(s) 60, 152, 283, 288, 418, 567, 582
CviKI_1 RGCY 7 cut(s) 60, 152, 283, 288, 418, 567, 582
DdeI CTNAG 1 cut(s) 563
DpnI GATC 3 cut(s) 234, 477, 554
DpnII GATC 3 cut(s) 232, 475, 552
DraI TTTAAA 1 cut(s) 343
DraIII CACNNNGTG 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 250
Eco32I GATATC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 418, 582
EcoRV GATATC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 37, 228, 338, 353, 598
FaiI YATR 9 cut(s) 35, 138, 226, 260, 267, 336, 351, 529, 596
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 5 cut(s) 33, 224, 334, 349, 594
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 23, 61, 64, 112, 507
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 5 cut(s) 23, 61, 64, 112, 507
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 26, 115
GluI GCNGC 5 cut(s) 23, 61, 64, 112, 507
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 582
HapII CCGG 1 cut(s) 382
HhaI GCGC 2 cut(s) 27, 116
Hin1II CATG 5 cut(s) 37, 228, 338, 353, 598
Hin6I GCGC 2 cut(s) 25, 114
HinP1I GCGC 2 cut(s) 25, 114
HinfI GANTC 4 cut(s) 42, 122, 238, 329
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 152, 458
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 4 cut(s) 237, 243, 298, 364
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 600
HpyCH4III ACNGT 3 cut(s) 10, 516, 559
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 57
HpyF3I CTNAG 1 cut(s) 563
Hsp92II CATG 5 cut(s) 37, 228, 338, 353, 598
HspAI GCGC 2 cut(s) 25, 114
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 3 cut(s) 232, 475, 552
LmnI GCTCC 2 cut(s) 32, 56
Lsp1109I GCAGC 3 cut(s) 47, 123, 493
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 127, 587
MalI GATC 3 cut(s) 234, 477, 554
MboI GATC 3 cut(s) 232, 475, 552
MboII GAAGA 2 cut(s) 285, 397
MhlI GDGCHC 2 cut(s) 53, 564
MluCI AATT 4 cut(s) 174, 323, 464, 610
MnlI CCTC 4 cut(s) 40, 214, 273, 602
MseI TTAA 4 cut(s) 195, 342, 467, 537
MslI CAYNNNNRTG 1 cut(s) 489
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 3 cut(s) 383, 420, 584
MvaI CCWGG 2 cut(s) 420, 584
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 19, 57
NciI CCSGG 1 cut(s) 383
NdeII GATC 3 cut(s) 232, 475, 552
NlaIII CATG 5 cut(s) 37, 228, 338, 353, 598
NlaIV GGNNCC 2 cut(s) 21, 606
OliI CACNNNNGTG 1 cut(s) 489
PfeI GAWTC 4 cut(s) 42, 122, 238, 329
PkrI GCNGC 5 cut(s) 24, 62, 65, 113, 508
Psp6I CCWGG 2 cut(s) 418, 582
PspEI GGTNACC 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 418, 582
PspN4I GGNNCC 2 cut(s) 21, 606
PspPI GGNCC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 4 cut(s) 195, 342, 467, 537
SatI GCNGC 5 cut(s) 23, 61, 64, 112, 507
Sau3AI GATC 3 cut(s) 232, 475, 552
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 383, 420, 584
SduI GDGCHC 2 cut(s) 53, 564
SetI ASST 7 cut(s) 62, 92, 154, 252, 256, 569, 594
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 4 cut(s) 174, 323, 464, 610
SsiI CCGC 3 cut(s) 17, 23, 64
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 381, 418, 582
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 10, 516, 559
TaqI TCGA 1 cut(s) 38
TasI AATT 4 cut(s) 174, 323, 464, 610
TauI GCSGC 2 cut(s) 25, 66
TfiI GAWTC 4 cut(s) 42, 122, 238, 329
Tru1I TTAA 4 cut(s) 195, 342, 467, 537
Tru9I TTAA 4 cut(s) 195, 342, 467, 537
TscAI CASTG 3 cut(s) 216, 222, 562
TseI GCWGC 3 cut(s) 60, 111, 506
TspDTI ATGAA 5 cut(s) 159, 213, 247, 282, 338
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 3 cut(s) 216, 222, 562
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmaJI CCTAGG 1 cut(s) 250
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.