Rh1AG251000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000347
Physical Location & Seq
Reverse (-)
46600925 .. 46607722
6798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG251000.1

Sequence Viewer

Length: 630 bp
ATGTCACGGTGGTTTGAGCTCAAGCTTGGTTTTCCTGAAGCTATTCTGCTCAAGAAGGCCGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTCCCCACTTCCATGTTCAACAATTTCATCCCCAACAATGCCGACCTCCAATTATCTCCAACCATGGTCCTCCTGGTTTCCACAAACTCGCATTTTCGGCTTTCGGAAATGACCACCGTGCTGGCGGTGCCGCGCTCCTCCATGTCGAGATTCTGGTGCTCCAAGAGCTGCCGCACGCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAGCGCTGGGGATTCGGTTACTCTTTATGGTGATGAACAAGCTGTTGATAGGATTTTCTGTGAAATTGGGGATGATGATGGCATCAAATACTCCTCTACACTGCCGAGCCTTAGTATACCTGTCACTATCAATATTTTGGAAGATTATCTTGATTGTGTAAAACTTCATTTATTTTTGGCCAATGGAATGCACAAAGGATCAAGCCGAGCATTACTCTCTTCGGCAATAAGAAGCAAAATTTACTTTGAGCAGTCAAAACACCTCCATGAACAATTCAATCAACCATCTTCCAATCCCTTAACTCCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.64

Weight (kDa)

8.54

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 433
AccII CGCG 1 cut(s) 232
AciI CCGC 3 cut(s) 224, 230, 271
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 322
AgsI TTSAA 3 cut(s) 118, 301, 595
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 6 cut(s) 19, 25, 41, 100, 267, 359
AluI AGCT 6 cut(s) 19, 25, 41, 100, 267, 359
Alw21I GWGCWC 3 cut(s) 21, 102, 260
AlwI GGATC 1 cut(s) 523
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 2 cut(s) 57, 495
ApeKI GCWGC 2 cut(s) 267, 318
ApoI RAATTY 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 234, 323
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 21, 102
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 3 cut(s) 21, 102, 260
BbvI GCAGC 2 cut(s) 254, 330
BccI CCATC 2 cut(s) 389, 610
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 4 cut(s) 230, 268, 271, 319
BlsI GCNGC 4 cut(s) 231, 269, 272, 320
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 516, 548
BpuEI CTTGAG 2 cut(s) 5, 35
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 126, 394
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 3 cut(s) 226, 400, 612
BseXI GCAGC 2 cut(s) 254, 330
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 59, 497
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 3 cut(s) 21, 102, 260
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 2 cut(s) 59, 497
Bsp1286I GDGCHC 3 cut(s) 21, 102, 260
Bsp143I GATC 1 cut(s) 515
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 3 cut(s) 224, 230, 271
BspANI GGCC 2 cut(s) 59, 497
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 515
BssNAI GTATAC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 162
Bst1107I GTATAC 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 9, 217
Bst6I CTCTTC 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 222, 275
BstDEI CTNAG 2 cut(s) 75, 428
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 126, 394
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 2 cut(s) 234, 323
BstKTI GATC 1 cut(s) 518
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 3 cut(s) 196, 226, 264
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 254, 330
BstV2I GAAGAC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 434
BsuRI GGCC 2 cut(s) 59, 497
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 126, 394
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 416
Cac8I GCNNGC 2 cut(s) 222, 275
CfoI GCGC 2 cut(s) 234, 323
Cfr13I GGNCC 1 cut(s) 166
CviAII CATG 4 cut(s) 112, 163, 241, 584
DdeI CTNAG 2 cut(s) 75, 428
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DraIII CACNNNGTG 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
Ecl136II GAGCTC 2 cut(s) 19, 100
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 21, 102
Eco47I GGWCC 1 cut(s) 166
Eco47III AGCGCT 1 cut(s) 322
Eco53kI GAGCTC 2 cut(s) 19, 100
Eco57I CTGAAG 1 cut(s) 57
EcoICRI GAGCTC 2 cut(s) 19, 100
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 21, 102
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 115, 166, 244, 587
FaiI YATR 6 cut(s) 113, 164, 242, 345, 434, 585
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 4 cut(s) 111, 162, 240, 583
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 230, 268, 271, 319
FokI GGATG 2 cut(s) 113, 401
FriOI GRGCYC 2 cut(s) 21, 102
Fsp4HI GCNGC 4 cut(s) 230, 268, 271, 319
GlaI GCGC 2 cut(s) 233, 322
GluI GCNGC 4 cut(s) 230, 268, 271, 319
GsaI CCCAGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 59, 497
HhaI GCGC 2 cut(s) 234, 323
Hin1II CATG 4 cut(s) 115, 166, 244, 587
Hin6I GCGC 2 cut(s) 232, 321
HinP1I GCGC 2 cut(s) 232, 321
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 66, 249, 329
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 91, 205
Hpy188III TCNNGA 4 cut(s) 35, 52, 246, 467
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 9, 217
HpyCH4V TGCA 2 cut(s) 292, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 226, 264
HpyF3I CTNAG 2 cut(s) 75, 428
Hsp92II CATG 4 cut(s) 115, 166, 244, 587
HspAI GCGC 2 cut(s) 232, 321
Kzo9I GATC 1 cut(s) 515
LmnI GCTCC 3 cut(s) 105, 239, 263
Lsp1109I GCAGC 2 cut(s) 254, 330
LweI GCATC 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 3, 334, 439
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 4 cut(s) 61, 470, 528, 597
MhlI GDGCHC 3 cut(s) 21, 102, 260
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 5 cut(s) 121, 149, 381, 555, 590
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 5 cut(s) 155, 179, 247, 421, 590
Mox20I TGGCCA 1 cut(s) 497
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 497
MseI TTAA 1 cut(s) 617
MslI CAYNNNNRTG 2 cut(s) 110, 582
Msp20I TGGCCA 1 cut(s) 497
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 196, 226, 264
NcoI CCATGG 1 cut(s) 162
NdeII GATC 1 cut(s) 515
NlaIII CATG 4 cut(s) 115, 166, 244, 587
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 2 cut(s) 447, 548
NmuCI GTSAC 2 cut(s) 3, 439
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 249, 329
PkrI GCNGC 4 cut(s) 231, 269, 272, 320
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp124BI GAGCTC 2 cut(s) 21, 102
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 110, 582
SacI GAGCTC 2 cut(s) 21, 102
SaqAI TTAA 1 cut(s) 617
SatI GCNGC 4 cut(s) 230, 268, 271, 319
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 3 cut(s) 21, 102, 260
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 110, 582
SmlI CTYRAG 2 cut(s) 20, 50
SmoI CTYRAG 2 cut(s) 20, 50
Sse9I AATT 5 cut(s) 121, 149, 381, 555, 590
SsiI CCGC 3 cut(s) 224, 230, 271
SspI AATATT 1 cut(s) 451
SstI GAGCTC 2 cut(s) 21, 102
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 9, 217
TaqI TCGA 2 cut(s) 245, 625
TaqII GACCGA 1 cut(s) 108
TasI AATT 5 cut(s) 121, 149, 381, 555, 590
TauI GCSGC 2 cut(s) 232, 273
TfiI GAWTC 2 cut(s) 249, 329
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 2 cut(s) 3, 439
TseI GCWGC 2 cut(s) 267, 318
Tsp45I GTSAC 2 cut(s) 3, 439
TspDTI ATGAA 4 cut(s) 115, 366, 473, 600
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.