RchiOBHm_Chr1g0353761

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000347
Physical Location & Seq
Reverse (-)
46914639 .. 46915884
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57938

Sequence Viewer

Length: 693 bp
ATGTTTGAGCTCCAACTGAACCAAGGGGCCGTTCTTCTCCGGAAGGCCGTGGCGCCACTCGTCGACCTGGCCGACTTCGCCGACGTCGAAATCTCCCCGGAGGAGGTGATCTTGCTGACCGCCGGCAACCCCGCCATCTCCGAGGAAGACTTCGTCGTGCTGCGGATTCCGGAATCGACCTTCGCTCGCTTCGTCTGCGACTTTGCAGGGTCGTTCGTTCTCAACCTCCGCCGCTTGTATTCCAATCTGAATCGCGCCGGCGACGACGACGCGCTCACCATTCACGGCGACGACGGCGACGATCTGATCGGCTTCGTGACCGTGAATTCCGGAACTGGGGAGTTTGGTTTCTCTGAAATGGAATTGTCTGAATCATACGCTGAAGGGTTGGATTTACCAGAGTTAGATTATGAATATCGAGCCATCATTGGGATACCTTCAGAGGAGTTTAGACATCTTATCATACATCTGCACTACTTTGGGAATTCTGGTACTTATCATCTGCACTATATTCGTTTTCTTTGTTGTGATGGGCATTTACAGATTGGATTTCAGAAAATGAGCTTTTGCTTTGTTAGTTTTGAAGAGAACGTGTTCATCTTCATTGTATTACTTTATCATTTATGGTATCTTAGAGTCGCACGTGGTAATATTTGGTCTAGGGATGGAGTGCAATGGCATAATAATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

230

Amino Acids

26.18

Weight (kDa)

4.58

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCNA_N PF00705 1 - 110 3.4e-08 Proliferating cell nuclear antigen, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 63
AccII CGCG 2 cut(s) 255, 272
AccIII TCCGGA 3 cut(s) 39, 169, 329
AciI CCGC 5 cut(s) 120, 132, 163, 229, 232
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 325, 484
AcuI CTGAAG 2 cut(s) 402, 423
AcvI CACGTG 1 cut(s) 644
AcyI GRCGYC 2 cut(s) 53, 84
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 3 cut(s) 103, 336, 429
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 1 cut(s) 584
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 10, 564
AluI AGCT 2 cut(s) 10, 564
Alw21I GWGCWC 1 cut(s) 12
Aor13HI TCCGGA 3 cut(s) 39, 169, 329
AoxI GGCC 3 cut(s) 27, 45, 69
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 325, 484
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 3 cut(s) 55, 257, 274
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 118, 268
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 12
BbrPI CACGTG 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 147
BccI CCATC 4 cut(s) 143, 431, 524, 659
BceAI ACGGC 4 cut(s) 14, 32, 301, 310
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 426
BcnI CCSGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 689
BfoI RGCGCY 1 cut(s) 56
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 2 cut(s) 161, 232
BlsI GCNGC 2 cut(s) 162, 233
Bme1390I CCNGG 2 cut(s) 68, 98
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 28, 54
BmrFI CCNGG 2 cut(s) 68, 98
BmrI ACTGGG 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 644
BsaHI GRCGYC 2 cut(s) 53, 84
BsaJI CCNNGG 4 cut(s) 22, 48, 96, 141
BsaWI WCCGGW 3 cut(s) 39, 169, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 336, 429
Bse118I RCCGGY 2 cut(s) 122, 257
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 680
BseAI TCCGGA 3 cut(s) 39, 169, 329
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 4 cut(s) 22, 48, 96, 141
BseGI GGATG 1 cut(s) 670
BseLI CCNNNNNNNGG 3 cut(s) 103, 336, 429
BseMI GCAATG 1 cut(s) 680
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 2 cut(s) 116, 458
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 2 cut(s) 455, 488
Bsh1236I CGCG 2 cut(s) 255, 272
BshFI GGCC 3 cut(s) 29, 47, 71
BshNI GGYRCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 6 cut(s) 40, 98, 123, 170, 258, 330
BslI CCNNNNNNNGG 3 cut(s) 103, 336, 429
BsnI GGCC 3 cut(s) 29, 47, 71
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 3 cut(s) 39, 169, 329
Bsp143I GATC 3 cut(s) 108, 301, 306
BspACI CCGC 5 cut(s) 120, 132, 163, 229, 232
BspANI GGCC 3 cut(s) 29, 47, 71
BspEI TCCGGA 3 cut(s) 39, 169, 329
BspFNI CGCG 2 cut(s) 255, 272
BspLI GGNNCC 2 cut(s) 28, 54
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 680
BsrFI RCCGGY 2 cut(s) 122, 257
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 2 cut(s) 122, 257
BssECI CCNNGG 4 cut(s) 22, 48, 96, 141
BssMI GATC 3 cut(s) 108, 301, 306
BssNI GRCGYC 2 cut(s) 53, 84
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 579
BstACI GRCGYC 2 cut(s) 53, 84
BstBAI YACGTR 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 124, 187, 259
BstDEI CTNAG 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 670
BstFNI CGCG 2 cut(s) 255, 272
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 55, 257, 274
BstKTI GATC 3 cut(s) 111, 304, 309
BstMBI GATC 3 cut(s) 108, 301, 306
BstMWI GCNNNNNNNGC 3 cut(s) 77, 195, 294
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 96
BstSFI CTRYAG 1 cut(s) 689
BstUI CGCG 2 cut(s) 255, 272
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 153
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 3 cut(s) 29, 47, 71
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 670
Cac8I GCNNGC 3 cut(s) 124, 187, 259
CfoI GCGC 3 cut(s) 55, 257, 274
Cfr10I RCCGGY 2 cut(s) 122, 257
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 492
CviJI RGCY 7 cut(s) 10, 29, 47, 71, 312, 422, 564
CviKI_1 RGCY 7 cut(s) 10, 29, 47, 71, 312, 422, 564
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 1 cut(s) 632
DinI GGCGCC 1 cut(s) 54
DpnI GATC 3 cut(s) 110, 303, 308
DpnII GATC 3 cut(s) 108, 301, 306
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 402, 423
Eco72I CACGTG 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 10
EcoRI GAATTC 2 cut(s) 325, 484
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 12
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 22
FaiI YATR 6 cut(s) 376, 411, 464, 510, 625, 681
FauI CCCGC 1 cut(s) 139
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 161, 232
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 161, 232
FspBI CTAG 1 cut(s) 660
GlaI GCGC 3 cut(s) 54, 256, 273
GluI GCNGC 2 cut(s) 161, 232
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 29, 47, 71
HapII CCGG 6 cut(s) 40, 98, 123, 170, 258, 330
HgaI GACGC 1 cut(s) 278
HhaI GCGC 3 cut(s) 55, 257, 274
Hin1I GRCGYC 2 cut(s) 53, 84
Hin6I GCGC 3 cut(s) 53, 255, 272
HinP1I GCGC 3 cut(s) 53, 255, 272
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 5 cut(s) 166, 173, 250, 371, 636
HpaII CCGG 6 cut(s) 40, 98, 123, 170, 258, 330
HphI GGTGA 2 cut(s) 118, 268
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 7 cut(s) 142, 249, 306, 355, 370, 442, 555
Hpy188III TCNNGA 4 cut(s) 40, 170, 316, 330
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 37, 190, 377, 447
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 3 cut(s) 84, 591, 643
HpyCH4V TGCA 4 cut(s) 206, 472, 505, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 195, 294
HpyF3I CTNAG 1 cut(s) 632
HpySE526I ACGT 3 cut(s) 84, 591, 643
Hsp92I GRCGYC 2 cut(s) 53, 84
HspAI GCGC 3 cut(s) 53, 255, 272
KasI GGCGCC 1 cut(s) 52
Kpn2I TCCGGA 3 cut(s) 39, 169, 329
KroI GCCGGC 2 cut(s) 122, 257
KroNI GCCGGC 2 cut(s) 124, 259
Kzo9I GATC 3 cut(s) 108, 301, 306
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 1 cut(s) 660
MaeII ACGT 3 cut(s) 84, 591, 643
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 110, 303, 308
MboI GATC 3 cut(s) 108, 301, 306
MboII GAAGA 4 cut(s) 26, 158, 592, 596
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 325, 362, 484
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 645
MmeI TCCRAC 2 cut(s) 37, 369
MnlI CCTC 5 cut(s) 94, 97, 136, 236, 436
MreI CGCCGGCG 1 cut(s) 257
MroI TCCGGA 3 cut(s) 39, 169, 329
MroNI GCCGGC 2 cut(s) 122, 257
MroXI GAANNNNTTC 1 cut(s) 593
MspI CCGG 6 cut(s) 40, 98, 123, 170, 258, 330
MspR9I CCNGG 2 cut(s) 68, 98
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 255, 272
MwoI GCNNNNNNNGC 3 cut(s) 77, 195, 294
NaeI GCCGGC 2 cut(s) 124, 259
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 1 cut(s) 98
NdeII GATC 3 cut(s) 108, 301, 306
NgoMIV GCCGGC 2 cut(s) 122, 257
NlaIV GGNNCC 2 cut(s) 28, 54
NmuCI GTSAC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 84, 189, 297
PdiI GCCGGC 2 cut(s) 124, 259
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 4 cut(s) 166, 173, 250, 371
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 162, 233
PleI GAGTC 1 cut(s) 644
PluTI GGCGCC 1 cut(s) 56
PmaCI CACGTG 1 cut(s) 644
PmlI CACGTG 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
Ppu21I YACGTR 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 66
PspCI CACGTG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 28, 54
PspPI GGNCC 1 cut(s) 27
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SacI GAGCTC 1 cut(s) 12
SalI GTCGAC 1 cut(s) 62
SatI GCNGC 2 cut(s) 161, 232
Sau3AI GATC 3 cut(s) 108, 301, 306
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 645
ScrFI CCNGG 2 cut(s) 68, 98
SduI GDGCHC 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 689
SfoI GGCGCC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 257
Sse9I AATT 3 cut(s) 325, 362, 484
SsiI CCGC 5 cut(s) 120, 132, 163, 229, 232
SspDI GGCGCC 1 cut(s) 52
SspI AATATT 1 cut(s) 652
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 66, 96
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 3 cut(s) 87, 594, 646
TaqI TCGA 4 cut(s) 63, 87, 176, 418
TasI AATT 3 cut(s) 325, 362, 484
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 4 cut(s) 166, 173, 250, 371
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 426, 586, 592
Tth111I GACNNNGTC 1 cut(s) 152
XapI RAATTY 2 cut(s) 325, 484
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 1 cut(s) 660
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.