Rh1DG249400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000347
Physical Location & Seq
Reverse (-)
46331895 .. 46335900
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG249400.1

Sequence Viewer

Length: 369 bp
ATGTCACGGTGGTTTGAGCTCAATCTTGGTTTTCCTGAAGCTATTCTGCTCAAGAAGGCCGTAAGAGTCTTCACTCAGGTAGCCTATTCAGACCGAGAGCTGCCCACTTCCATGTTCAACGATTTCATCCCCAACAATGCGGACCTCCAGTTATCTCCGACCATGGTCCTACTGGTTTCCACAAACTCGCATTTTCGGCTTTCGGAAATGACCACCGTGCTGGCGGTGCCGCGCTCCTCCATGTCGAGATTCTGGTGCTCCAAGAGCTGCCGCACTCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAGCGCTGGGGATTCGGTTCCATATGAAGCTAGCAAAGTATATGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

9.07

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccII CGCG 1 cut(s) 232
AciI CCGC 4 cut(s) 140, 224, 230, 271
AcuI CTGAAG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 118, 301
AluBI AGCT 5 cut(s) 19, 41, 100, 267, 347
AluI AGCT 5 cut(s) 19, 41, 100, 267, 347
Alw21I GWGCWC 2 cut(s) 21, 260
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 100, 267, 318
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 234, 323
AspS9I GGNCC 2 cut(s) 142, 166
AsuNHI GCTAGC 1 cut(s) 347
AvaII GGWCC 2 cut(s) 142, 166
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 2 cut(s) 21, 260
BbvI GCAGC 3 cut(s) 87, 254, 330
BceAI ACGGC 1 cut(s) 44
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 5 cut(s) 101, 230, 268, 271, 319
BlsI GCNGC 5 cut(s) 102, 231, 269, 272, 320
Bme18I GGWCC 2 cut(s) 142, 166
BmgT120I GGNCC 2 cut(s) 142, 166
BmiI GGNNCC 2 cut(s) 228, 336
BmtI GCTAGC 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 3 cut(s) 148, 177, 315
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 3 cut(s) 148, 177, 315
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 3 cut(s) 87, 254, 330
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 21, 260
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 21, 260
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 4 cut(s) 140, 224, 230, 271
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 228, 336
BspOI GCTAGC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 226
BsrI ACTGG 3 cut(s) 148, 177, 315
BssECI CCNNGG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 9, 217
BstC8I GCNNGC 2 cut(s) 222, 349
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 2 cut(s) 234, 323
BstMWI GCNNNNNNNGC 3 cut(s) 196, 226, 264
BstPAI GACNNNNGTC 1 cut(s) 164
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 87, 254, 330
BstV2I GAAGAC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 222, 349
CfoI GCGC 2 cut(s) 234, 323
Cfr13I GGNCC 2 cut(s) 142, 166
CviAII CATG 3 cut(s) 112, 163, 241
CviJI RGCY 8 cut(s) 19, 41, 59, 83, 100, 199, 267, 347
CviKI_1 RGCY 8 cut(s) 19, 41, 59, 83, 100, 199, 267, 347
DdeI CTNAG 1 cut(s) 75
DraIII CACNNNGTG 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 142, 166
Eco47III AGCGCT 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 115, 166, 244
FaiI YATR 7 cut(s) 113, 164, 242, 340, 342, 358, 360
FatI CATG 3 cut(s) 111, 162, 240
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 101, 230, 268, 271, 319
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 5 cut(s) 101, 230, 268, 271, 319
FspBI CTAG 1 cut(s) 348
GlaI GCGC 2 cut(s) 233, 322
GluI GCNGC 5 cut(s) 101, 230, 268, 271, 319
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 59
HhaI GCGC 2 cut(s) 234, 323
Hin1II CATG 3 cut(s) 115, 166, 244
Hin6I GCGC 2 cut(s) 232, 321
HinP1I GCGC 2 cut(s) 232, 321
HinfI GANTC 3 cut(s) 66, 249, 329
Hpy188I TCNGA 3 cut(s) 91, 159, 205
Hpy188III TCNNGA 3 cut(s) 35, 52, 246
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 9, 217
HpyCH4V TGCA 2 cut(s) 292, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 226, 264
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 115, 166, 244
HspAI GCGC 2 cut(s) 232, 321
LmnI GCTCC 2 cut(s) 239, 263
LpnPI CCDG 9 cut(s) 48, 62, 158, 161, 206, 238, 280, 296, 309
Lsp1109I GCAGC 3 cut(s) 87, 254, 330
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 21, 260
MluCI AATT 1 cut(s) 364
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 2 cut(s) 155, 247
MroXI GAANNNNTTC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 110
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 196, 226, 264
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 340
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 3 cut(s) 115, 166, 244
NlaIV GGNNCC 2 cut(s) 228, 336
NmuCI GTSAC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 249, 329
PkrI GCNGC 5 cut(s) 102, 231, 269, 272, 320
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 228, 336
PspPI GGNCC 2 cut(s) 142, 166
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 21
SatI GCNGC 5 cut(s) 101, 230, 268, 271, 319
Sau96I GGNCC 2 cut(s) 142, 166
SchI GAGTC 1 cut(s) 75
SduI GDGCHC 2 cut(s) 21, 260
SetI ASST 8 cut(s) 21, 43, 81, 102, 147, 269, 299, 349
SinI GGWCC 2 cut(s) 142, 166
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 364
SsiI CCGC 4 cut(s) 140, 224, 230, 271
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 21
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 9, 217
TaqI TCGA 1 cut(s) 245
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 364
TauI GCSGC 2 cut(s) 232, 273
TfiI GAWTC 2 cut(s) 249, 329
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 100, 267, 318
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 115, 357
VpaK11BI GGWCC 2 cut(s) 142, 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.