Rh1DG248200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000347
Physical Location & Seq
Reverse (-)
46259593 .. 46261288
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG248200.1

Sequence Viewer

Length: 1044 bp
ATGAGCGCCGACACGTGGGAGACGGCGCCGACTTCACAGGAGGAGGAGGTCATGTCGGCGGCGGCGGCGGCGGCGTCTTCATCATCGGAGGAGGTTGTGGAAGACACAGACTCTGATGAAACTCAGACCACCATCGCGTCGTCGTCGTCGTCCTCGGCGGAGAAGAGGCAAAATCTCTGGTTTCATGCGGAGCTGAACCAAGTCCGTCTTCTCCAGAGGGCCTTGAGACCTCTGTTTCAGACTGCCTACACCGACCGAGAGTACCCGGACGACATGTTCCACGCCGGACATATCCGCGACGCCGGCCACGTCTGCATATCGCCGGACGGGATTCTTCTGATCTGCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTCCAACTGCCTCTCGCAACCTTCTCCGCCTTTCGCTGCCGCAAGGAGCGCGTGCTGGACCTCCACCTCCGCCTCTTGGAGAACCGAATCAACAGTACCATCGACGATTATGAAGACGATGATGGCATTTCTGTATGCTTCTCCGGAGCGAAGCCGAACTACAACGCCCTGCTCTATTCTCTGAGGGACAGGGATGCTGTTGCCGTGCACAGCTCTGAGATGGCGCTCATTTCCTCATATCGGGGTTCTTTGGCGGGATTGGATTGGTCGGATTACAGTTATATAGTGAGCATTGAGATGCCGGCCCAGATTTTTAGGCAACTTATCAATTCTCTGAGATTTTTAAGCAACTTATCAATTTTCCTTTACATTACTGATTACTTGGTAAAAGTCAGTTTTCATGCCGATGTGACAGCGACTCGAATTATGTTCCGTGTAGTCAATAAAGTGGTTATTCTGGAGGAAGGGGCTGAGAGATACCGGATTCTGCGTGAGAGGGGTCAATATCCATTTTTGTTGGAATTTGGTCTCCATCAAAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACAGAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTACCTGTTAATGGACTCGGTAGCATCCTGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

39.15

Weight (kDa)

5.16

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 997
AccB1I GGYRCC 2 cut(s) 25, 997
AccB7I CCANNNNNTGG 1 cut(s) 973
AccII CGCG 3 cut(s) 137, 297, 429
AccIII TCCGGA 1 cut(s) 521
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 899
AcvI CACGTG 1 cut(s) 15
AcyI GRCGYC 4 cut(s) 26, 74, 300, 372
AfaI GTAC 3 cut(s) 263, 475, 999
AfiI CCNNNNNNNGG 6 cut(s) 15, 454, 618, 934, 973, 1007
AflIII ACRYGT 2 cut(s) 12, 273
AjiI CACGTC 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 193, 591, 970
AluI AGCT 3 cut(s) 193, 591, 970
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 3 cut(s) 14, 220, 911
Alw44I GTGCAC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 3 cut(s) 219, 304, 681
ApaLI GTGCAC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 414, 961
ApoI RAATTY 1 cut(s) 899
Asp718I GGTACC 1 cut(s) 997
AspLEI GCGC 4 cut(s) 8, 28, 429, 604
AspS9I GGNCC 3 cut(s) 219, 436, 682
AsuC2I CCSGG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 588
BanI GGYRCC 2 cut(s) 25, 997
BarI GAAGNNNNNNTAC 2 cut(s) 521, 553
BbrPI CACGTG 1 cut(s) 15
BbsI GAAGAC 4 cut(s) 69, 108, 200, 498
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 401, 948
BccI CCATC 5 cut(s) 140, 485, 494, 592, 918
BceAI ACGGC 2 cut(s) 39, 566
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 3 cut(s) 14, 220, 911
BfaI CTAG 1 cut(s) 1035
BfoI RGCGCY 3 cut(s) 9, 29, 605
BisI GCNGC 9 cut(s) 60, 63, 66, 69, 72, 415, 418, 936, 962
BlsI GCNGC 9 cut(s) 61, 64, 67, 70, 73, 416, 419, 937, 963
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 436
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 219, 436, 682
BmiI GGNNCC 2 cut(s) 27, 999
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 562, 666, 1029
BpiI GAAGAC 4 cut(s) 69, 108, 200, 498
BpmI CTGGAG 2 cut(s) 197, 857
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 15
BsaHI GRCGYC 4 cut(s) 26, 74, 300, 372
BsaI GGTCTC 2 cut(s) 220, 911
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 521, 858
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 454, 618, 934, 973, 1007
Bse118I RCCGGY 2 cut(s) 302, 679
BseAI TCCGGA 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 577, 1020
BseLI CCNNNNNNNGG 6 cut(s) 15, 454, 618, 934, 973, 1007
BseMII CTCAG 5 cut(s) 137, 551, 585, 704, 840
BseRI GAGGAG 3 cut(s) 56, 59, 104
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 2 cut(s) 401, 948
BsgI GTGCAG 2 cut(s) 328, 947
Bsh1236I CGCG 3 cut(s) 137, 297, 429
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 221, 306, 683
BshNI GGYRCC 2 cut(s) 25, 997
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 7 cut(s) 266, 285, 303, 323, 522, 680, 859
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 6 cut(s) 15, 454, 618, 934, 973, 1007
BsmAI GTCTC 3 cut(s) 14, 220, 911
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 2 cut(s) 923, 937
BsnI GGCC 3 cut(s) 221, 306, 683
Bso31I GGTCTC 2 cut(s) 220, 911
Bsp1286I GDGCHC 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 1 cut(s) 339
BspANI GGCC 3 cut(s) 221, 306, 683
BspCNI CTCAG 5 cut(s) 136, 552, 586, 705, 841
BspEI TCCGGA 1 cut(s) 521
BspFNI CGCG 3 cut(s) 137, 297, 429
BspLI GGNNCC 2 cut(s) 27, 999
BspT107I GGYRCC 2 cut(s) 25, 997
BspTNI GGTCTC 2 cut(s) 220, 911
BsrFI RCCGGY 2 cut(s) 302, 679
BssAI RCCGGY 2 cut(s) 302, 679
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 339
BssNI GRCGYC 4 cut(s) 26, 74, 300, 372
Bst4CI ACNGT 3 cut(s) 473, 656, 988
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 4 cut(s) 26, 74, 300, 372
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 304, 431, 681
BstDEI CTNAG 5 cut(s) 123, 560, 594, 713, 849
BstF5I GGATG 2 cut(s) 577, 1020
BstFNI CGCG 3 cut(s) 137, 297, 429
BstH2I RGCGCY 3 cut(s) 9, 29, 605
BstHHI GCGC 4 cut(s) 8, 28, 429, 604
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 3 cut(s) 14, 220, 911
BstMBI GATC 1 cut(s) 339
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 7 cut(s) 65, 68, 71, 303, 312, 426, 967
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 3 cut(s) 137, 297, 429
BstV1I GCAGC 2 cut(s) 401, 948
BstV2I GAAGAC 4 cut(s) 69, 108, 200, 498
BsuRI GGCC 3 cut(s) 221, 306, 683
BtgZI GCGATG 1 cut(s) 118
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 577, 1020
BtsIMutI CAGTG 1 cut(s) 984
Cac8I GCNNGC 3 cut(s) 304, 431, 681
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 4 cut(s) 8, 28, 429, 604
Cfr10I RCCGGY 2 cut(s) 302, 679
Cfr13I GGNCC 3 cut(s) 219, 436, 682
CseI GACGC 4 cut(s) 63, 126, 308, 380
Csp6I GTAC 3 cut(s) 262, 474, 998
CviAII CATG 4 cut(s) 52, 185, 274, 779
CviQI GTAC 3 cut(s) 262, 474, 998
DdeI CTNAG 5 cut(s) 123, 560, 594, 713, 849
DinI GGCGCC 1 cut(s) 27
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 3 cut(s) 173, 394, 437
Eco31I GGTCTC 2 cut(s) 220, 911
Eco47I GGWCC 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 219
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 55, 188, 277, 782
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 578
FatI CATG 4 cut(s) 51, 184, 273, 778
FauI CCCGC 2 cut(s) 366, 625
Fnu4HI GCNGC 9 cut(s) 60, 63, 66, 69, 72, 415, 418, 936, 962
FokI GGATG 2 cut(s) 584, 1007
Fsp4HI GCNGC 9 cut(s) 60, 63, 66, 69, 72, 415, 418, 936, 962
FspBI CTAG 1 cut(s) 1035
GlaI GCGC 4 cut(s) 7, 27, 428, 603
GluI GCNGC 9 cut(s) 60, 63, 66, 69, 72, 415, 418, 936, 962
GsuI CTGGAG 2 cut(s) 197, 857
HaeII RGCGCY 3 cut(s) 9, 29, 605
HaeIII GGCC 3 cut(s) 221, 306, 683
HapII CCGG 7 cut(s) 266, 285, 303, 323, 522, 680, 859
HgaI GACGC 4 cut(s) 63, 126, 308, 380
HhaI GCGC 4 cut(s) 8, 28, 429, 604
Hin1I GRCGYC 4 cut(s) 26, 74, 300, 372
Hin1II CATG 4 cut(s) 55, 188, 277, 782
Hin6I GCGC 4 cut(s) 6, 26, 427, 602
HinP1I GCGC 4 cut(s) 6, 26, 427, 602
HinfI GANTC 6 cut(s) 110, 331, 465, 796, 862, 1011
HpaII CCGG 7 cut(s) 266, 285, 303, 323, 522, 680, 859
Hpy166II GTNNAC 1 cut(s) 586
Hpy188III TCNNGA 5 cut(s) 214, 368, 522, 836, 928
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 6 cut(s) 142, 145, 148, 151, 302, 485
HpyAV CCTTC 2 cut(s) 409, 836
HpyCH4III ACNGT 3 cut(s) 473, 656, 988
HpyCH4IV ACGT 2 cut(s) 14, 309
HpyCH4V TGCA 5 cut(s) 315, 345, 586, 923, 964
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 68, 71, 303, 312, 426, 967
HpyF3I CTNAG 5 cut(s) 123, 560, 594, 713, 849
HpySE526I ACGT 2 cut(s) 14, 309
Hsp92I GRCGYC 4 cut(s) 26, 74, 300, 372
Hsp92II CATG 4 cut(s) 55, 188, 277, 782
HspAI GCGC 4 cut(s) 6, 26, 427, 602
KasI GGCGCC 1 cut(s) 25
Kpn2I TCCGGA 1 cut(s) 521
KpnI GGTACC 1 cut(s) 1001
KroI GCCGGC 2 cut(s) 302, 679
KroNI GCCGGC 2 cut(s) 304, 681
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 190, 424, 524
Lsp1109I GCAGC 2 cut(s) 401, 948
LweI GCATC 3 cut(s) 562, 666, 1029
MaeI CTAG 1 cut(s) 1035
MaeII ACGT 2 cut(s) 14, 309
MaeIII GTNAC 1 cut(s) 787
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 6 cut(s) 69, 113, 175, 200, 326, 503
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 4 cut(s) 706, 735, 801, 899
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 3 cut(s) 104, 790, 1005
MmeI TCCRAC 4 cut(s) 406, 627, 876, 972
MroI TCCGGA 1 cut(s) 521
MroNI GCCGGC 2 cut(s) 302, 679
MseI TTAA 2 cut(s) 722, 1005
MslI CAYNNNNRTG 2 cut(s) 674, 783
MspI CCGG 7 cut(s) 266, 285, 303, 323, 522, 680, 859
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 2 cut(s) 923, 937
MvnI CGCG 3 cut(s) 137, 297, 429
MwoI GCNNNNNNNGC 7 cut(s) 65, 68, 71, 303, 312, 426, 967
NaeI GCCGGC 2 cut(s) 304, 681
NarI GGCGCC 1 cut(s) 26
NciI CCSGG 1 cut(s) 266
NdeII GATC 1 cut(s) 339
NgoMIV GCCGGC 2 cut(s) 302, 679
NlaIII CATG 4 cut(s) 55, 188, 277, 782
NlaIV GGNNCC 2 cut(s) 27, 999
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 306
PctI GAATGC 2 cut(s) 923, 937
PdiI GCCGGC 2 cut(s) 304, 681
PfeI GAWTC 3 cut(s) 331, 465, 862
PflMI CCANNNNNTGG 1 cut(s) 973
PkrI GCNGC 9 cut(s) 61, 64, 67, 70, 73, 416, 419, 937, 963
PleI GAGTC 3 cut(s) 104, 790, 1005
PluTI GGCGCC 1 cut(s) 29
PmaCI CACGTG 1 cut(s) 15
PmlI CACGTG 1 cut(s) 15
PpsI GAGTC 3 cut(s) 104, 790, 1005
Ppu21I YACGTR 1 cut(s) 15
PscI ACATGT 1 cut(s) 273
PspCI CACGTG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 27, 999
PspPI GGNCC 3 cut(s) 219, 436, 682
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 3 cut(s) 263, 475, 999
RsaNI GTAC 3 cut(s) 262, 474, 998
RseI CAYNNNNRTG 2 cut(s) 674, 783
SaqAI TTAA 2 cut(s) 722, 1005
SatI GCNGC 9 cut(s) 60, 63, 66, 69, 72, 415, 418, 936, 962
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 3 cut(s) 219, 436, 682
SchI GAGTC 3 cut(s) 104, 790, 1005
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 3 cut(s) 562, 666, 1029
SfoI GGCGCC 1 cut(s) 27
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 674, 783
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 4 cut(s) 706, 735, 801, 899
SspDI GGCGCC 1 cut(s) 25
SspMI CTAG 1 cut(s) 1035
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 473, 656, 988
TaiI ACGT 2 cut(s) 17, 312
TaqI TCGA 2 cut(s) 480, 799
TaqII GACCGA 1 cut(s) 270
TasI AATT 4 cut(s) 706, 735, 801, 899
TauI GCSGC 7 cut(s) 62, 65, 68, 71, 74, 420, 938
TfiI GAWTC 3 cut(s) 331, 465, 862
Tru1I TTAA 2 cut(s) 722, 1005
Tru9I TTAA 2 cut(s) 722, 1005
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 2 cut(s) 414, 961
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 5 cut(s) 69, 132, 173, 504, 767
TspGWI ACGGA 2 cut(s) 194, 800
TspRI CASTG 1 cut(s) 991
Van91I CCANNNNNTGG 1 cut(s) 973
VneI GTGCAC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 1 cut(s) 899
XceI RCATGY 1 cut(s) 277
XspI CTAG 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.