DNA polymerase processivity factor activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1510 |
| AccB1I | GGYRCC | 2 cut(s) | 226, 1510 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1486 |
| AccI | GTMKAC | 1 cut(s) | 1368 |
| AccII | CGCG | 3 cut(s) | 232, 855, 949 |
| AccIII | TCCGGA | 2 cut(s) | 880, 1076 |
| AclWI | GGATC | 2 cut(s) | 447, 844 |
| AcoI | YGGCCR | 1 cut(s) | 862 |
| AcsI | RAATTY | 1 cut(s) | 1412 |
| AcuI | CTGAAG | 3 cut(s) | 41, 57, 486 |
| AcyI | GRCGYC | 1 cut(s) | 930 |
| AdeI | CACNNNGTG | 1 cut(s) | 279 |
| AfaI | GTAC | 3 cut(s) | 1088, 1512, 1624 |
| AfeI | AGCGCT | 1 cut(s) | 322 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 195, 1012, 1015, 1447, 1486, 1520 |
| AflIII | ACRYGT | 1 cut(s) | 831 |
| AgsI | TTSAA | 4 cut(s) | 118, 301, 616, 671 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 832 |
| AjnI | CCWGG | 1 cut(s) | 171 |
| AleI | CACNNNNGTG | 1 cut(s) | 696 |
| Alw21I | GWGCWC | 4 cut(s) | 102, 260, 993, 1143 |
| Alw26I | GTCTC | 5 cut(s) | 790, 803, 1235, 1424, 1552 |
| Alw44I | GTGCAC | 1 cut(s) | 1139 |
| AlwI | GGATC | 2 cut(s) | 447, 844 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1361, 1544 |
| Ama87I | CYCGRG | 1 cut(s) | 244 |
| Aor13HI | TCCGGA | 2 cut(s) | 880, 1076 |
| Aor51HI | AGCGCT | 1 cut(s) | 322 |
| AoxI | GGCC | 2 cut(s) | 789, 862 |
| ApaLI | GTGCAC | 1 cut(s) | 1139 |
| ApeKI | GCWGC | 4 cut(s) | 267, 318, 972, 1064 |
| ApoI | RAATTY | 1 cut(s) | 1412 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 446, 478, 1556, 1588 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 42, 1718 |
| Asp718I | GGTACC | 1 cut(s) | 1510 |
| AspA2I | CCTAGG | 1 cut(s) | 457 |
| AspLEI | GCGC | 3 cut(s) | 234, 323, 1100 |
| AspS9I | GGNCC | 4 cut(s) | 166, 454, 982, 1018 |
| AsuC2I | CCSGG | 4 cut(s) | 590, 628, 824, 1176 |
| AsuHPI | GGTGA | 4 cut(s) | 359, 665, 1469, 1546 |
| AvaI | CYCGRG | 1 cut(s) | 244 |
| AvaII | GGWCC | 4 cut(s) | 166, 454, 982, 1018 |
| AvrII | CCTAGG | 1 cut(s) | 457 |
| BaeGI | GKGCMC | 1 cut(s) | 1143 |
| BanI | GGYRCC | 2 cut(s) | 226, 1510 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 4 cut(s) | 61, 492, 604, 770 |
| Bbv12I | GWGCWC | 4 cut(s) | 102, 260, 993, 1143 |
| BbvCI | CCTCAGC | 1 cut(s) | 1362 |
| BbvI | GCAGC | 4 cut(s) | 254, 330, 959, 1051 |
| BccI | CCATC | 6 cut(s) | 248, 389, 445, 1049, 1431, 1559 |
| BceAI | ACGGC | 2 cut(s) | 44, 1121 |
| BciT130I | CCWGG | 1 cut(s) | 173 |
| BcnI | CCSGG | 4 cut(s) | 590, 628, 824, 1176 |
| BcoDI | GTCTC | 5 cut(s) | 790, 803, 1235, 1424, 1552 |
| BfaI | CTAG | 3 cut(s) | 458, 717, 1452 |
| BfmI | CTRYAG | 1 cut(s) | 782 |
| BfoI | RGCGCY | 2 cut(s) | 324, 1101 |
| BlnI | CCTAGG | 1 cut(s) | 457 |
| Bme1390I | CCNGG | 5 cut(s) | 173, 590, 628, 824, 1176 |
| Bme18I | GGWCC | 4 cut(s) | 166, 454, 982, 1018 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 832 |
| BmeT110I | CYCGRG | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 4 cut(s) | 166, 454, 982, 1018 |
| BmiI | GGNNCC | 2 cut(s) | 228, 1512 |
| BmrFI | CCNGG | 5 cut(s) | 173, 590, 628, 824, 1176 |
| BmsI | GCATC | 2 cut(s) | 408, 1221 |
| BpiI | GAAGAC | 4 cut(s) | 61, 492, 604, 770 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1362 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 814 |
| BpuMI | CCSGG | 4 cut(s) | 590, 628, 824, 1176 |
| BsaBI | GATNNNNATC | 1 cut(s) | 660 |
| BsaHI | GRCGYC | 1 cut(s) | 930 |
| BsaI | GGTCTC | 3 cut(s) | 790, 803, 1424 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 457 |
| BsaWI | WCCGGW | 2 cut(s) | 880, 1076 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 195, 1012, 1015, 1447, 1486, 1520 |
| Bse1I | ACTGG | 2 cut(s) | 315, 422 |
| Bse8I | GATNNNNATC | 1 cut(s) | 660 |
| BseAI | TCCGGA | 2 cut(s) | 880, 1076 |
| BseBI | CCWGG | 1 cut(s) | 173 |
| BseDI | CCNNGG | 2 cut(s) | 162, 457 |
| BseGI | GGATG | 2 cut(s) | 126, 394 |
| BseJI | GATNNNNATC | 1 cut(s) | 660 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 195, 1012, 1015, 1447, 1486, 1520 |
| BseMII | CTCAG | 6 cut(s) | 89, 1106, 1140, 1234, 1340, 1353 |
| BseNI | ACTGG | 2 cut(s) | 315, 422 |
| BseRI | GAGGAG | 3 cut(s) | 226, 400, 1352 |
| BseSI | GKGCMC | 1 cut(s) | 1143 |
| BseXI | GCAGC | 4 cut(s) | 254, 330, 959, 1051 |
| BseYI | CCCAGC | 1 cut(s) | 323 |
| BsgI | GTGCAG | 1 cut(s) | 275 |
| Bsh1236I | CGCG | 3 cut(s) | 232, 855, 949 |
| BshFI | GGCC | 2 cut(s) | 791, 864 |
| BshNI | GGYRCC | 2 cut(s) | 226, 1510 |
| BsiHKAI | GWGCWC | 4 cut(s) | 102, 260, 993, 1143 |
| BsiHKCI | CYCGRG | 1 cut(s) | 244 |
| BsiSI | CCGG | 8 cut(s) | 589, 627, 824, 843, 861, 881, 1077, 1176 |
| BslFI | GGGAC | 3 cut(s) | 820, 1133, 1536 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 195, 1012, 1015, 1447, 1486, 1520 |
| BsmAI | GTCTC | 5 cut(s) | 790, 803, 1235, 1424, 1552 |
| BsmFI | GGGAC | 3 cut(s) | 820, 1133, 1536 |
| BsmI | GAATGC | 2 cut(s) | 1436, 1665 |
| BsnI | GGCC | 2 cut(s) | 791, 864 |
| Bso31I | GGTCTC | 3 cut(s) | 790, 803, 1424 |
| BsoBI | CYCGRG | 1 cut(s) | 244 |
| Bsp1286I | GDGCHC | 4 cut(s) | 102, 260, 993, 1143 |
| Bsp13I | TCCGGA | 2 cut(s) | 880, 1076 |
| Bsp143I | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspANI | GGCC | 2 cut(s) | 791, 864 |
| BspCNI | CTCAG | 6 cut(s) | 88, 1107, 1141, 1233, 1341, 1354 |
| BspEI | TCCGGA | 2 cut(s) | 880, 1076 |
| BspFNI | CGCG | 3 cut(s) | 232, 855, 949 |
| BspLI | GGNNCC | 2 cut(s) | 228, 1512 |
| BspMAI | CTGCAG | 1 cut(s) | 786 |
| BspPI | GGATC | 2 cut(s) | 447, 844 |
| BspT107I | GGYRCC | 2 cut(s) | 226, 1510 |
| BspTNI | GGTCTC | 3 cut(s) | 790, 803, 1424 |
| BsrI | ACTGG | 2 cut(s) | 315, 422 |
| BssECI | CCNNGG | 2 cut(s) | 162, 457 |
| BssMI | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| BssNI | GRCGYC | 1 cut(s) | 930 |
| BssT1I | CCWWGG | 2 cut(s) | 162, 457 |
| Bst2UI | CCWGG | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 9 cut(s) | 9, 217, 610, 723, 1042, 1049, 1211, 1300, 1501 |
| BstACI | GRCGYC | 1 cut(s) | 930 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1292 |
| BstC8I | GCNNGC | 4 cut(s) | 222, 275, 951, 1069 |
| BstDEI | CTNAG | 8 cut(s) | 75, 1115, 1149, 1220, 1349, 1362, 1637, 1655 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1013 |
| BstF5I | GGATG | 2 cut(s) | 126, 394 |
| BstFNI | CGCG | 3 cut(s) | 232, 855, 949 |
| BstH2I | RGCGCY | 2 cut(s) | 324, 1101 |
| BstHHI | GCGC | 3 cut(s) | 234, 323, 1100 |
| BstKTI | GATC | 4 cut(s) | 442, 685, 852, 1733 |
| BstMAI | GTCTC | 5 cut(s) | 790, 803, 1235, 1424, 1552 |
| BstMBI | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 226, 264, 861, 870, 959, 1292, 1480, 1642 |
| BstNI | CCWGG | 1 cut(s) | 173 |
| BstNSI | RCATGY | 2 cut(s) | 835, 1071 |
| BstSCI | CCNGG | 5 cut(s) | 171, 588, 626, 822, 1174 |
| BstSFI | CTRYAG | 1 cut(s) | 782 |
| BstSLI | GKGCMC | 1 cut(s) | 1143 |
| BstUI | CGCG | 3 cut(s) | 232, 855, 949 |
| BstV1I | GCAGC | 4 cut(s) | 254, 330, 959, 1051 |
| BstV2I | GAAGAC | 4 cut(s) | 61, 492, 604, 770 |
| BstX2I | RGATCY | 2 cut(s) | 849, 1730 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 220 |
| BstYI | RGATCY | 2 cut(s) | 849, 1730 |
| BsuRI | GGCC | 2 cut(s) | 791, 864 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 2 cut(s) | 126, 394 |
| BtsI | GCAGTG | 1 cut(s) | 416 |
| BtsIMutI | CAGTG | 4 cut(s) | 416, 429, 525, 1497 |
| Cac8I | GCNNGC | 4 cut(s) | 222, 275, 951, 1069 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1361, 1544 |
| CfoI | GCGC | 3 cut(s) | 234, 323, 1100 |
| Cfr13I | GGNCC | 4 cut(s) | 166, 454, 982, 1018 |
| CseI | GACGC | 1 cut(s) | 938 |
| Csp6I | GTAC | 3 cut(s) | 1087, 1511, 1623 |
| CviQI | GTAC | 3 cut(s) | 1087, 1511, 1623 |
| DdeI | CTNAG | 8 cut(s) | 75, 1115, 1149, 1220, 1349, 1362, 1637, 1655 |
| DpnI | GATC | 4 cut(s) | 441, 684, 851, 1732 |
| DpnII | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| DraI | TTTAAA | 1 cut(s) | 550 |
| DraIII | CACNNNGTG | 1 cut(s) | 279 |
| DriI | GACNNNNNGTC | 1 cut(s) | 832 |
| EaeI | YGGCCR | 1 cut(s) | 862 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 832 |
| EciI | GGCGGA | 2 cut(s) | 983, 995 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco130I | CCWWGG | 2 cut(s) | 162, 457 |
| Eco147I | AGGCCT | 1 cut(s) | 791 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco31I | GGTCTC | 3 cut(s) | 790, 803, 1424 |
| Eco32I | GATATC | 2 cut(s) | 662, 1397 |
| Eco47I | GGWCC | 4 cut(s) | 166, 454, 982, 1018 |
| Eco47III | AGCGCT | 1 cut(s) | 322 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 3 cut(s) | 41, 57, 486 |
| Eco88I | CYCGRG | 1 cut(s) | 244 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1013 |
| EcoRII | CCWGG | 1 cut(s) | 171 |
| EcoRV | GATATC | 2 cut(s) | 662, 1397 |
| EcoT14I | CCWWGG | 2 cut(s) | 162, 457 |
| EcoT22I | ATGCAT | 1 cut(s) | 1665 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| ErhI | CCWWGG | 2 cut(s) | 162, 457 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 596, 628, 762, 794 |
| FaqI | GGGAC | 3 cut(s) | 820, 1133, 1536 |
| FauI | CCCGC | 1 cut(s) | 924 |
| FblI | GTMKAC | 1 cut(s) | 1368 |
| FokI | GGATG | 2 cut(s) | 113, 401 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| FspBI | CTAG | 3 cut(s) | 458, 717, 1452 |
| GlaI | GCGC | 3 cut(s) | 233, 322, 1099 |
| GsaI | CCCAGC | 1 cut(s) | 327 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HaeII | RGCGCY | 2 cut(s) | 324, 1101 |
| HaeIII | GGCC | 2 cut(s) | 791, 864 |
| HapII | CCGG | 8 cut(s) | 589, 627, 824, 843, 861, 881, 1077, 1176 |
| HgaI | GACGC | 1 cut(s) | 938 |
| HhaI | GCGC | 3 cut(s) | 234, 323, 1100 |
| Hin1I | GRCGYC | 1 cut(s) | 930 |
| Hin6I | GCGC | 3 cut(s) | 232, 321, 1098 |
| HinP1I | GCGC | 3 cut(s) | 232, 321, 1098 |
| HincII | GTYRAC | 2 cut(s) | 1045, 1564 |
| HindII | GTYRAC | 2 cut(s) | 1045, 1564 |
| HindIII | AAGCTT | 1 cut(s) | 23 |
| HpaII | CCGG | 8 cut(s) | 589, 627, 824, 843, 861, 881, 1077, 1176 |
| HphI | GGTGA | 4 cut(s) | 359, 665, 1469, 1546 |
| Hpy166II | GTNNAC | 4 cut(s) | 1045, 1141, 1369, 1564 |
| Hpy8I | GTNNAC | 4 cut(s) | 1045, 1141, 1369, 1564 |
| Hpy99I | CGWCG | 2 cut(s) | 1192, 1240 |
| HpyAV | CCTTC | 6 cut(s) | 730, 781, 922, 967, 977, 1121 |
| HpyCH4III | ACNGT | 9 cut(s) | 9, 217, 610, 723, 1042, 1049, 1211, 1300, 1501 |
| HpyCH4IV | ACGT | 1 cut(s) | 1190 |
| HpyCH4V | TGCA | 9 cut(s) | 292, 784, 873, 1067, 1141, 1286, 1436, 1538, 1663 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 226, 264, 861, 870, 959, 1292, 1480, 1642 |
| HpyF3I | CTNAG | 8 cut(s) | 75, 1115, 1149, 1220, 1349, 1362, 1637, 1655 |
| HpySE526I | ACGT | 1 cut(s) | 1190 |
| Hsp92I | GRCGYC | 1 cut(s) | 930 |
| HspAI | GCGC | 3 cut(s) | 232, 321, 1098 |
| Kpn2I | TCCGGA | 2 cut(s) | 880, 1076 |
| KpnI | GGTACC | 1 cut(s) | 1514 |
| Kzo9I | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| LmnI | GCTCC | 6 cut(s) | 105, 239, 263, 760, 996, 1172 |
| Lsp1109I | GCAGC | 4 cut(s) | 254, 330, 959, 1051 |
| LweI | GCATC | 2 cut(s) | 408, 1221 |
| MaeI | CTAG | 3 cut(s) | 458, 717, 1452 |
| MaeII | ACGT | 1 cut(s) | 1190 |
| MaeIII | GTNAC | 3 cut(s) | 3, 334, 1300 |
| MalI | GATC | 4 cut(s) | 441, 684, 851, 1732 |
| MboI | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| MboII | GAAGA | 5 cut(s) | 61, 492, 604, 745, 770 |
| MflI | RGATCY | 2 cut(s) | 849, 1730 |
| MhlI | GDGCHC | 4 cut(s) | 102, 260, 993, 1143 |
| MluCI | AATT | 6 cut(s) | 149, 381, 530, 671, 1261, 1412 |
| MlyI | GAGTC | 3 cut(s) | 75, 851, 1518 |
| MmeI | TCCRAC | 4 cut(s) | 182, 1389, 1485, 1563 |
| Mph1103I | ATGCAT | 1 cut(s) | 1665 |
| MroI | TCCGGA | 2 cut(s) | 880, 1076 |
| MroXI | GAANNNNTTC | 2 cut(s) | 42, 1718 |
| MseI | TTAA | 6 cut(s) | 549, 674, 1248, 1518, 1628, 1735 |
| MslI | CAYNNNNRTG | 4 cut(s) | 110, 696, 1229, 1683 |
| MspI | CCGG | 8 cut(s) | 589, 627, 824, 843, 861, 881, 1077, 1176 |
| MspR9I | CCNGG | 5 cut(s) | 173, 590, 628, 824, 1176 |
| Mva1269I | GAATGC | 2 cut(s) | 1436, 1665 |
| MvaI | CCWGG | 1 cut(s) | 173 |
| MvnI | CGCG | 3 cut(s) | 232, 855, 949 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 226, 264, 861, 870, 959, 1292, 1480, 1642 |
| NciI | CCSGG | 4 cut(s) | 590, 628, 824, 1176 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NdeII | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 1512 |
| NmuCI | GTSAC | 2 cut(s) | 3, 1300 |
| NsiI | ATGCAT | 1 cut(s) | 1665 |
| NspI | RCATGY | 2 cut(s) | 835, 1071 |
| OliI | CACNNNNGTG | 1 cut(s) | 696 |
| PaeI | GCATGC | 1 cut(s) | 1071 |
| PaeR7I | CTCGAG | 1 cut(s) | 244 |
| PceI | AGGCCT | 1 cut(s) | 791 |
| PciI | ACATGT | 1 cut(s) | 831 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 936 |
| PctI | GAATGC | 2 cut(s) | 1436, 1665 |
| PdmI | GAANNNNTTC | 2 cut(s) | 42, 1718 |
| PfeI | GAWTC | 7 cut(s) | 249, 329, 445, 536, 1023, 1375, 1541 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1486 |
| PfoI | TCCNGGA | 1 cut(s) | 822 |
| PleI | GAGTC | 3 cut(s) | 74, 851, 1518 |
| PpsI | GAGTC | 3 cut(s) | 74, 851, 1518 |
| PscI | ACATGT | 1 cut(s) | 831 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 171 |
| PspFI | CCCAGC | 1 cut(s) | 323 |
| PspGI | CCWGG | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 1512 |
| PspPI | GGNCC | 4 cut(s) | 166, 454, 982, 1018 |
| PstI | CTGCAG | 1 cut(s) | 786 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1361, 1544 |
| PsuI | RGATCY | 2 cut(s) | 849, 1730 |
| RsaI | GTAC | 3 cut(s) | 1088, 1512, 1624 |
| RsaNI | GTAC | 3 cut(s) | 1087, 1511, 1623 |
| RseI | CAYNNNNRTG | 4 cut(s) | 110, 696, 1229, 1683 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SaqAI | TTAA | 6 cut(s) | 549, 674, 1248, 1518, 1628, 1735 |
| Sau3AI | GATC | 4 cut(s) | 439, 682, 849, 1730 |
| Sau96I | GGNCC | 4 cut(s) | 166, 454, 982, 1018 |
| SchI | GAGTC | 3 cut(s) | 75, 851, 1518 |
| ScrFI | CCNGG | 5 cut(s) | 173, 590, 628, 824, 1176 |
| SduI | GDGCHC | 4 cut(s) | 102, 260, 993, 1143 |
| SfaNI | GCATC | 2 cut(s) | 408, 1221 |
| SfcI | CTRYAG | 1 cut(s) | 782 |
| Sfr274I | CTCGAG | 1 cut(s) | 244 |
| SinI | GGWCC | 4 cut(s) | 166, 454, 982, 1018 |
| SlaI | CTCGAG | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 110, 696, 1229, 1683 |
| SmlI | CTYRAG | 3 cut(s) | 50, 244, 793 |
| SmoI | CTYRAG | 3 cut(s) | 50, 244, 793 |
| SphI | GCATGC | 1 cut(s) | 1071 |
| Sse9I | AATT | 6 cut(s) | 149, 381, 530, 671, 1261, 1412 |
| SseBI | AGGCCT | 1 cut(s) | 791 |
| SspMI | CTAG | 3 cut(s) | 458, 717, 1452 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StuI | AGGCCT | 1 cut(s) | 791 |
| StyD4I | CCNGG | 5 cut(s) | 171, 588, 626, 822, 1174 |
| StyI | CCWWGG | 2 cut(s) | 162, 457 |
| TaaI | ACNGT | 9 cut(s) | 9, 217, 610, 723, 1042, 1049, 1211, 1300, 1501 |
| TaiI | ACGT | 1 cut(s) | 1193 |
| TaqI | TCGA | 4 cut(s) | 245, 939, 1385, 1393 |
| TaqII | GACCGA | 2 cut(s) | 108, 1035 |
| TasI | AATT | 6 cut(s) | 149, 381, 530, 671, 1261, 1412 |
| TatI | WGTACW | 1 cut(s) | 1086 |
| TauI | GCSGC | 7 cut(s) | 232, 273, 716, 949, 965, 1031, 1451 |
| TfiI | GAWTC | 7 cut(s) | 249, 329, 445, 536, 1023, 1375, 1541 |
| Tru1I | TTAA | 6 cut(s) | 549, 674, 1248, 1518, 1628, 1735 |
| Tru9I | TTAA | 6 cut(s) | 549, 674, 1248, 1518, 1628, 1735 |
| TscAI | CASTG | 4 cut(s) | 423, 429, 532, 1504 |
| TseFI | GTSAC | 2 cut(s) | 3, 1300 |
| TseI | GCWGC | 4 cut(s) | 267, 318, 972, 1064 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 1300 |
| TspDTI | ATGAA | 7 cut(s) | 115, 366, 420, 489, 545, 743, 746 |
| TspGWI | ACGGA | 5 cut(s) | 654, 764, 1253, 1313, 1389 |
| TspRI | CASTG | 4 cut(s) | 423, 429, 532, 1504 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1486 |
| VneI | GTGCAC | 1 cut(s) | 1139 |
| VpaK11BI | GGWCC | 4 cut(s) | 166, 454, 982, 1018 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1013 |
| XapI | RAATTY | 1 cut(s) | 1412 |
| XceI | RCATGY | 2 cut(s) | 835, 1071 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 169, 429 |
| XhoI | CTCGAG | 1 cut(s) | 244 |
| XmaJI | CCTAGG | 1 cut(s) | 457 |
| XmiI | GTMKAC | 1 cut(s) | 1368 |
| XmnI | GAANNNNTTC | 2 cut(s) | 42, 1718 |
| XspI | CTAG | 3 cut(s) | 458, 717, 1452 |
| Zsp2I | ATGCAT | 1 cut(s) | 1665 |