Rorug01G0238900

DNA polymerase processivity factor activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
34397517 .. 34400870
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0238900.1

Sequence Viewer

Length: 570 bp
ATGAGCACCGGAGATCTCCTCAGCATTCAGCCCACGGAGCTCAAATTCCCATTTGAACTGAAGAAGCAGAGCTCGTGTTCTTTGCAATTGACCAACAAAACAGATAAATATGTGGCATTTAAGGTTAAGACAACCAATCCAAAGAAGTATTGTGTCAGACCCAATGCTGGTGTTGTTTTGCCCGGATCGACATGTGATGTTACAGTTACGATGCAAGCCCAAAAGGAGGCACCCCCAGATATGCAGTGTAAGGACAAATTTCTTCTTCAAAGTGTTGTTGCGCCAGATGGTTCAACTACAAAAGACATAACTCCTGAAATGTTCAACAAGGATGATGGTAAAGTTGTGGAAGAGTTCAAATTGCGGGTAATTTACTTTCCTGCCAACCCCCCGTCACCTGTCCCTGAAGGATCTGATGAGGGCTCTTCTCCCAGGGCAGTGGTTGAGAATGGGACTCAAAATCCTTCCTTGTTTGATGCTGTGTCAAGATCTCTTGAGGAACCAAAAGAGAAATCTTCAGAGGAAAAGAAAAGAAAGAAAGAAAGAAAAAAAAAGAAGAAGAAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.06

Weight (kDa)

9.23

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Motile_Sperm PF00635 7 - 110 1.3e-35 MSP (Major sperm protein) domain
Cep192_D6 PF22076 7 - 78 1.1e-07 Cep192 domain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 193, 418
AcsI RAATTY 2 cut(s) 44, 257
AcuI CTGAAG 3 cut(s) 80, 426, 501
AfiI CCNNNNNNNGG 2 cut(s) 167, 226
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 5 cut(s) 56, 269, 294, 325, 358
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 2 cut(s) 40, 72
AluI AGCT 2 cut(s) 40, 72
Alw21I GWGCWC 3 cut(s) 8, 42, 74
AlwI GGATC 2 cut(s) 193, 418
ApoI RAATTY 2 cut(s) 44, 257
AspLEI GCGC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 387
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 3 cut(s) 42, 74, 425
BauI CACGAG 1 cut(s) 73
Bbv12I GWGCWC 3 cut(s) 8, 42, 74
BbvCI CCTCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 281, 329
BciT130I CCWGG 1 cut(s) 433
BcnI CCSGG 1 cut(s) 183
BglII AGATCT 2 cut(s) 13, 488
Bme1390I CCNGG 2 cut(s) 183, 433
BmiI GGNNCC 2 cut(s) 231, 501
BmrFI CCNGG 2 cut(s) 183, 433
BmsI GCATC 2 cut(s) 201, 466
BplI GAGNNNNNCTC 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 33, 431, 432
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 226
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 3 cut(s) 33, 431, 432
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 167, 226
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 3 cut(s) 8, 42, 74
BsiSI CCGG 2 cut(s) 9, 183
BslFI GGGAC 2 cut(s) 386, 466
BslI CCNNNNNNNGG 2 cut(s) 167, 226
BsmFI GGGAC 2 cut(s) 386, 466
BsmI GAATGC 1 cut(s) 24
Bsp1286I GDGCHC 4 cut(s) 8, 42, 74, 425
Bsp143I GATC 4 cut(s) 13, 185, 410, 488
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 231, 501
BspPI GGATC 2 cut(s) 193, 418
BspQI GCTCTTC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 33, 431, 432
BssMI GATC 4 cut(s) 13, 185, 410, 488
BssSI CACGAG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 2 cut(s) 345, 430
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 4 cut(s) 16, 188, 413, 491
BstMBI GATC 4 cut(s) 13, 185, 410, 488
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 433
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 181, 431
BstX2I RGATCY 3 cut(s) 13, 410, 488
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 3 cut(s) 13, 410, 488
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 2 cut(s) 251, 444
BtsIMutI CAGTG 2 cut(s) 251, 444
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 283
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 31, 40, 72, 218, 423
CviKI_1 RGCY 5 cut(s) 31, 40, 72, 218, 423
DdeI CTNAG 1 cut(s) 20
DpnI GATC 4 cut(s) 15, 187, 412, 490
DpnII GATC 4 cut(s) 13, 185, 410, 488
Eam1104I CTCTTC 2 cut(s) 345, 430
EarI CTCTTC 2 cut(s) 345, 430
Ecl136II GAGCTC 2 cut(s) 40, 72
Eco24I GRGCYC 3 cut(s) 42, 74, 425
Eco53kI GAGCTC 2 cut(s) 40, 72
Eco57I CTGAAG 3 cut(s) 80, 426, 501
EcoICRI GAGCTC 2 cut(s) 40, 72
EcoRII CCWGG 1 cut(s) 431
EcoT38I GRGCYC 3 cut(s) 42, 74, 425
FaeI CATG 1 cut(s) 195
FaiI YATR 4 cut(s) 111, 193, 242, 308
FaqI GGGAC 2 cut(s) 386, 466
FatI CATG 1 cut(s) 191
FauI CCCGC 1 cut(s) 357
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 3 cut(s) 42, 74, 425
GlaI GCGC 1 cut(s) 282
HapII CCGG 2 cut(s) 9, 183
HhaI GCGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 195
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 1 cut(s) 454
HpaII CCGG 2 cut(s) 9, 183
HphI GGTGA 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 158, 415, 520
Hpy188III TCNNGA 3 cut(s) 314, 486, 494
HpyAV CCTTC 2 cut(s) 401, 474
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 85, 214, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 1 cut(s) 195
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 4 cut(s) 13, 185, 410, 488
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 37
LweI GCATC 2 cut(s) 201, 466
MaeIII GTNAC 3 cut(s) 199, 205, 393
MalI GATC 4 cut(s) 15, 187, 412, 490
MboI GATC 4 cut(s) 13, 185, 410, 488
MboII GAAGA 7 cut(s) 73, 254, 257, 362, 417, 507, 568
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 3 cut(s) 13, 410, 488
MhlI GDGCHC 4 cut(s) 8, 42, 74, 425
MluCI AATT 5 cut(s) 44, 86, 257, 359, 369
MlyI GAGTC 1 cut(s) 448
MnlI CCTC 5 cut(s) 29, 220, 412, 490, 514
MseI TTAA 2 cut(s) 120, 126
MspI CCGG 2 cut(s) 9, 183
MspR9I CCNGG 2 cut(s) 183, 433
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 183
NdeII GATC 4 cut(s) 13, 185, 410, 488
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 2 cut(s) 231, 501
NmuCI GTSAC 1 cut(s) 393
NspI RCATGY 1 cut(s) 195
PasI CCCWGGG 1 cut(s) 432
PciI ACATGT 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 430
PctI GAATGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PscI ACATGT 1 cut(s) 191
Psp124BI GAGCTC 2 cut(s) 42, 74
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 231, 501
PsuI RGATCY 3 cut(s) 13, 410, 488
SacI GAGCTC 2 cut(s) 42, 74
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 2 cut(s) 120, 126
Sau3AI GATC 4 cut(s) 13, 185, 410, 488
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 183, 433
SduI GDGCHC 4 cut(s) 8, 42, 74, 425
SetI ASST 4 cut(s) 42, 74, 126, 400
SfaNI GCATC 2 cut(s) 201, 466
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 5 cut(s) 44, 86, 257, 359, 369
SsiI CCGC 1 cut(s) 364
SstI GAGCTC 2 cut(s) 42, 74
StyD4I CCNGG 2 cut(s) 181, 431
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 188
TasI AATT 5 cut(s) 44, 86, 257, 359, 369
Tru1I TTAA 2 cut(s) 120, 126
Tru9I TTAA 2 cut(s) 120, 126
TscAI CASTG 2 cut(s) 251, 444
TseFI GTSAC 1 cut(s) 393
Tsp45I GTSAC 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 251, 444
XapI RAATTY 2 cut(s) 44, 257
XceI RCATGY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.