RchiOBHm_Chr1g0353871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000347
Physical Location & Seq
Forward (+)
47072492 .. 47074449
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57948

Sequence Viewer

Length: 624 bp
ATGACGAGCTTTAAGTGCTACGAAAGCCGGAATCTGCAGTTCAATCTGGAAATCCTCCACCGCCAATTGCAGCTGAACAATCTGCATGAGCTCATTCTTTATGGTGAGGTAGAAAGTAAGGATATGCTTGGCTATGAAGATCCTGATGAACCGGGTGATCATGTGATTTTCTATGAGCTTGTGAATGGTCCTGACAGGTTGATTCACTCCTTTAAAATGCCACTGCTTTCATGGAATCGGGATGCGATGGACCTAAGATTCTTAGCAAATCAATATCCAGTGCGCCTTGGCTTGTCTTCAGCGAGATTTTGTGAGCTTATCACTAATATGGATTCTTTTGGGTGTACAGTTCATGCCACACTGTTCGAAAATCAAGTTCTTTTCCGTGTAGTGAATTACGAGCGTGTCTTCCTAACAGAGCCCTCAAGATGCGAAACTGAGAGTGATCATGGATTTCCGTGTGCGTTGAAGTTTGATATCCAGCACATAAAGGCGCTTCTCAATGCCGCTACTTTGTCAGAGATGATATGGATATGGTCCTCGGATAAGTTCACCTTGCTCAGTTTCCCAATTGATGGCTTGGGTAAACTTTTCTTTGGCCATTATAAGTTTACAACTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

24.11

Weight (kDa)

5.31

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 575
AciI CCGC 2 cut(s) 61, 507
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 2 cut(s) 43, 469
AluBI AGCT 5 cut(s) 9, 73, 91, 178, 316
AluI AGCT 5 cut(s) 9, 73, 91, 178, 316
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 285, 496
AspS9I GGNCC 3 cut(s) 188, 250, 537
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 116, 167, 544
AsuII TTCGAA 1 cut(s) 366
AvaII GGWCC 3 cut(s) 188, 250, 537
BalI TGGCCA 1 cut(s) 600
BanII GRGCYC 2 cut(s) 93, 423
BbsI GAAGAC 2 cut(s) 288, 400
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 241, 569
BclI TGATCA 2 cut(s) 157, 445
BcnI CCSGG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 2 cut(s) 71, 507
BlsI GCNGC 2 cut(s) 72, 508
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 3 cut(s) 188, 250, 537
BmgT120I GGNCC 3 cut(s) 188, 250, 537
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 232, 419
BpiI GAAGAC 2 cut(s) 288, 400
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 286, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 286, 540
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 2 cut(s) 429, 574
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 28, 152
BslI CCNNNNNNNGG 1 cut(s) 575
BsnI GGCC 1 cut(s) 600
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 93, 423
Bsp1407I TGTACA 1 cut(s) 344
Bsp143I GATC 3 cut(s) 139, 157, 445
BspACI CCGC 2 cut(s) 61, 507
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 2 cut(s) 430, 573
BspMAI CTGCAG 1 cut(s) 39
BspPI GGATC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 344
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 286, 540
BssMI GATC 3 cut(s) 139, 157, 445
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 349, 363
BstAUI TGTACA 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 366
BstDEI CTNAG 4 cut(s) 254, 262, 438, 560
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 285, 496
BstKTI GATC 3 cut(s) 142, 160, 448
BstMBI GATC 3 cut(s) 139, 157, 445
BstMWI GCNNNNNNNGC 2 cut(s) 15, 24
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 2 cut(s) 288, 400
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 600
BtgZI GCGATG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 3 cut(s) 221, 285, 359
CfoI GCGC 2 cut(s) 285, 496
Cfr13I GGNCC 3 cut(s) 188, 250, 537
Csp6I GTAC 1 cut(s) 345
CviAII CATG 5 cut(s) 86, 161, 231, 353, 449
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 4 cut(s) 254, 262, 438, 560
DpnI GATC 3 cut(s) 141, 159, 447
DpnII GATC 3 cut(s) 139, 157, 445
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 598
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 93, 423
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 3 cut(s) 188, 250, 537
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 91
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 93, 423
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 5 cut(s) 89, 164, 234, 356, 452
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FatI CATG 5 cut(s) 85, 160, 230, 352, 448
FbaI TGATCA 2 cut(s) 157, 445
Fnu4HI GCNGC 2 cut(s) 71, 507
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 93, 423
Fsp4HI GCNGC 2 cut(s) 71, 507
GlaI GCGC 2 cut(s) 284, 495
GluI GCNGC 2 cut(s) 71, 507
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 1 cut(s) 600
HapII CCGG 2 cut(s) 28, 152
HhaI GCGC 2 cut(s) 285, 496
Hin1II CATG 5 cut(s) 89, 164, 234, 356, 452
Hin6I GCGC 2 cut(s) 283, 494
HinP1I GCGC 2 cut(s) 283, 494
HinfI GANTC 5 cut(s) 31, 202, 235, 258, 332
HpaII CCGG 2 cut(s) 28, 152
HphI GGTGA 3 cut(s) 116, 167, 544
Hpy166II GTNNAC 4 cut(s) 345, 552, 587, 612
Hpy188I TCNGA 2 cut(s) 520, 544
Hpy188III TCNNGA 5 cut(s) 47, 143, 191, 239, 426
Hpy8I GTNNAC 4 cut(s) 345, 552, 587, 612
HpyCH4III ACNGT 2 cut(s) 349, 363
HpyCH4V TGCA 3 cut(s) 37, 70, 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 24
HpyF3I CTNAG 4 cut(s) 254, 262, 438, 560
Hsp92II CATG 5 cut(s) 89, 164, 234, 356, 452
HspAI GCGC 2 cut(s) 283, 494
Ksp22I TGATCA 2 cut(s) 157, 445
Kzo9I GATC 3 cut(s) 139, 157, 445
LpnPI CCDG 8 cut(s) 32, 41, 156, 165, 181, 204, 291, 494
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 232, 419
MalI GATC 3 cut(s) 141, 159, 447
MboI GATC 3 cut(s) 139, 157, 445
MboII GAAGA 3 cut(s) 149, 288, 400
MfeI CAATTG 2 cut(s) 65, 570
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 93, 423
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 3 cut(s) 65, 394, 570
MluNI TGGCCA 1 cut(s) 600
MnlI CCTC 4 cut(s) 65, 100, 433, 550
Mox20I TGGCCA 1 cut(s) 600
MscI TGGCCA 1 cut(s) 600
MseI TTAA 2 cut(s) 12, 213
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 28, 152
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 2 cut(s) 65, 570
MwoI GCNNNNNNNGC 2 cut(s) 15, 24
NciI CCSGG 1 cut(s) 153
NdeII GATC 3 cut(s) 139, 157, 445
NlaIII CATG 5 cut(s) 89, 164, 234, 356, 452
NspV TTCGAA 1 cut(s) 366
PfeI GAWTC 5 cut(s) 31, 202, 235, 258, 332
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 2 cut(s) 72, 508
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 188, 250, 537
PstI CTGCAG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 12, 213
SatI GCNGC 2 cut(s) 71, 507
Sau3AI GATC 3 cut(s) 139, 157, 445
Sau96I GGNCC 3 cut(s) 188, 250, 537
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 2 cut(s) 93, 423
SetI ASST 9 cut(s) 11, 75, 93, 111, 180, 200, 255, 318, 557
SfaNI GCATC 2 cut(s) 232, 419
SfcI CTRYAG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 366
SinI GGWCC 3 cut(s) 188, 250, 537
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 3 cut(s) 65, 394, 570
SsiI CCGC 2 cut(s) 61, 507
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 349, 363
TaqI TCGA 1 cut(s) 366
TasI AATT 3 cut(s) 65, 394, 570
TatI WGTACW 1 cut(s) 344
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 5 cut(s) 31, 202, 235, 258, 332
Tru1I TTAA 2 cut(s) 12, 213
Tru9I TTAA 2 cut(s) 12, 213
TscAI CASTG 3 cut(s) 228, 285, 366
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 150, 162, 219, 341
TspGWI ACGGA 2 cut(s) 374, 447
TspRI CASTG 3 cut(s) 228, 285, 366
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 3 cut(s) 188, 250, 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.