RLG00000029705

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000347
Physical Location & Seq
Reverse (-)
43474136 .. 43476003
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029705

Sequence Viewer

Length: 327 bp
ATGCTGGCCCAGATTTTTAGGGAACTTATCAATTCTCTGAGCTTTTATGGGTTTGAAGTTCATGCCGATGTGACAGCAACTAGAATTATGTTCCGTGTAGTCAATAAAGTGGTTATTCTGGAGGAAGGGGCTGAGAGATACCAGATTCTGCGTGGAAGGGGTCAATATCCATTTTTGTTGGAATTTGGTCTCCATCAAAAGAGTGCATTCCTGAATGCGGCGAGTTTATCAGACACAGTTAGGCTGCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTACCTGTTAATGGACTCGGTAGCATCCTGTTTTGTTCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

7.97

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 256
AciI CCGC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 217, 256, 290
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 2 cut(s) 42, 253
AluI AGCT 2 cut(s) 42, 253
Alw26I GTCTC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 2 cut(s) 81, 318
BisI GCNGC 2 cut(s) 219, 245
BlsI GCNGC 2 cut(s) 220, 246
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 256, 290
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 217, 256, 290
BseMII CTCAG 2 cut(s) 29, 123
BseXI GCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 280
BslI CCNNNNNNNGG 3 cut(s) 217, 256, 290
BsmAI GTCTC 1 cut(s) 194
BsmI GAATGC 2 cut(s) 206, 220
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 194
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 30, 124
BspLI GGNNCC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 238, 271
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 38, 132
BstF5I GGATG 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 8, 42, 131, 244, 253, 322
CviKI_1 RGCY 6 cut(s) 8, 42, 131, 244, 253, 322
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 38, 132
Eco31I GGTCTC 1 cut(s) 194
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 48, 63, 89
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 219, 245
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 219, 245
FspBI CTAG 2 cut(s) 81, 318
GluI GCNGC 2 cut(s) 219, 245
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 1 cut(s) 65
HinfI GANTC 2 cut(s) 145, 294
Hpy188I TCNGA 2 cut(s) 39, 232
Hpy188III TCNNGA 2 cut(s) 119, 211
HpyAV CCTTC 2 cut(s) 119, 150
HpyCH4III ACNGT 2 cut(s) 238, 271
HpyCH4V TGCA 2 cut(s) 206, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 2 cut(s) 38, 132
Hsp92II CATG 1 cut(s) 65
KpnI GGTACC 1 cut(s) 284
LpnPI CCDG 7 cut(s) 23, 104, 155, 224, 263, 297, 320
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 81, 318
MaeIII GTNAC 1 cut(s) 70
MluCI AATT 3 cut(s) 31, 84, 182
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 2 cut(s) 159, 255
MnlI CCTC 2 cut(s) 115, 271
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 66
Mva1269I GAATGC 2 cut(s) 206, 220
MwoI GCNNNNNNNGC 1 cut(s) 250
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 70
PctI GAATGC 2 cut(s) 206, 220
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 2 cut(s) 220, 246
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 148
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 219, 245
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 288
SetI ASST 4 cut(s) 44, 255, 282, 286
SfaNI GCATC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 3 cut(s) 31, 84, 182
SsiI CCGC 1 cut(s) 218
SspMI CTAG 2 cut(s) 81, 318
TaaI ACNGT 2 cut(s) 238, 271
TasI AATT 3 cut(s) 31, 84, 182
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 256
XapI RAATTY 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 2 cut(s) 81, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.