FvH4_7g13770

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000347
Physical Location & Seq
Reverse (-)
12305822 .. 12308202
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13770.t4

Sequence Viewer

Length: 780 bp
ATGAACTCAGACTCGGAGGACGAGAAGAACGAAAATAGATGGTTTCATGCGGAGGTTAACGAAGTTCCTCTTCTGCAAAAGTGCTTGCGTCCCCTGACCGACGGAGAGAACCCGACCGGGAACGTCGACTACTTCTGCGTATCACCAGATGGGATGTACTTGGCCTCCACCCACGCCTACCTCGAATTTTCGGTGGTAAACTTCGCAGCCTACTACTGCCCCGAGAAACGTGTGCTCCGTCTCCACCTCCGCCACTTGGAGGACCGGATCGCCACCGCCGTCGACATTTATGCTGAGGAGGATGGTATATCCCTGTGCTTCACAGGAGAGAGGCCAAACTACAACGCTTTACTCCTTTCTATGAGAGACAGGGAAGGTAATGTGATCTATAGCTCTGAGATTGAGCTCGTTTTATCCTATCCAGGTTCAATGGAATTGAGATCGTCAGATGTGAATTACACAGTGAGCATTGACATGCAGACCCAGACCTTTATGCAACTTATTGAATATCTGAGCTTGTATGGGTTTGAGGTTCAAGCCACCGTGCAAAGTACTGGAATCATGTTTCGTGCAGTTAATGAGGAGATTATTTTGTGGGAGGAGAAGGGGATATACCAGATTGAGCATGAGGAAGATTCTACTGGCATTGGCATATCGGGCATCATCTCTTCTATTCGACACTTCTCGCGACATCTAGGCGAAGAACGACGGCAACAGTGGTGGAGGCGTCGGCGGCAGCTGGGTTTTTCCTTGGGGACGGCGGCTGTGTTAGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

260

Amino Acids

29.84

Weight (kDa)

4.8

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 126, 282
AccII CGCG 1 cut(s) 688
AciI CCGC 5 cut(s) 50, 250, 276, 733, 761
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 2 cut(s) 158, 553
AfiI CCNNNNNNNGG 2 cut(s) 256, 259
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 3 cut(s) 429, 506, 536
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 4 cut(s) 393, 406, 516, 739
AluI AGCT 4 cut(s) 393, 406, 516, 739
Alw21I GWGCWC 2 cut(s) 237, 408
Alw26I GTCTC 2 cut(s) 245, 360
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 162, 332
ApeKI GCWGC 2 cut(s) 206, 736
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 596, 628
Bbv12I GWGCWC 2 cut(s) 237, 408
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 218, 748
BccI CCATC 3 cut(s) 33, 143, 296
BceAI ACGGC 3 cut(s) 263, 725, 774
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 245, 360
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 4 cut(s) 207, 734, 737, 762
BlsI GCNGC 4 cut(s) 208, 735, 738, 763
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 118, 423
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 118, 423
BmsI GCATC 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 750
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 259
Bse1I ACTGG 2 cut(s) 559, 646
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 2 cut(s) 159, 307
BseLI CCNNNNNNNGG 2 cut(s) 256, 259
BseMII CTCAG 4 cut(s) 21, 285, 387, 503
BseNI ACTGG 2 cut(s) 559, 646
BseRI GAGGAG 3 cut(s) 311, 596, 614
BseXI GCAGC 2 cut(s) 218, 748
BseYI CCCAGC 1 cut(s) 739
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 688
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 164, 334
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 237, 408
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 2 cut(s) 117, 265
BslFI GGGAC 2 cut(s) 75, 769
BslI CCNNNNNNNGG 2 cut(s) 256, 259
BsmAI GTCTC 2 cut(s) 245, 360
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 75, 769
BsnI GGCC 2 cut(s) 164, 334
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 237, 408
Bsp143I GATC 3 cut(s) 267, 384, 440
Bsp68I TCGCGA 1 cut(s) 688
BspACI CCGC 5 cut(s) 50, 250, 276, 733, 761
BspANI GGCC 2 cut(s) 164, 334
BspCNI CTCAG 4 cut(s) 20, 286, 388, 504
BspFNI CGCG 1 cut(s) 688
BspPI GGATC 1 cut(s) 275
BsrI ACTGG 2 cut(s) 559, 646
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 3 cut(s) 267, 384, 440
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 463, 544, 717
Bst6I CTCTTC 2 cut(s) 75, 673
BstACI GRCGYC 1 cut(s) 727
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 4 cut(s) 7, 294, 396, 512
BstF5I GGATG 2 cut(s) 159, 307
BstFNI CGCG 1 cut(s) 688
BstKTI GATC 3 cut(s) 270, 387, 443
BstMAI GTCTC 2 cut(s) 245, 360
BstMBI GATC 3 cut(s) 267, 384, 440
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 657, 733
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 116, 421
BstSFI CTRYAG 1 cut(s) 388
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 2 cut(s) 218, 748
BsuRI GGCC 2 cut(s) 164, 334
BtsCI GGATG 2 cut(s) 159, 307
BtsIMutI CAGTG 2 cut(s) 468, 722
BtuMI TCGCGA 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 2 cut(s) 77, 716
Csp6I GTAC 2 cut(s) 157, 552
CspCI CAANNNNNGTGG 2 cut(s) 701, 736
CviAII CATG 4 cut(s) 47, 475, 562, 626
CviJI RGCY 9 cut(s) 164, 209, 334, 393, 406, 516, 539, 739, 764
CviKI_1 RGCY 9 cut(s) 164, 209, 334, 393, 406, 516, 539, 739, 764
CviQI GTAC 2 cut(s) 157, 552
DdeI CTNAG 4 cut(s) 7, 294, 396, 512
DpnI GATC 3 cut(s) 269, 386, 442
DpnII GATC 3 cut(s) 267, 384, 440
Eam1104I CTCTTC 2 cut(s) 75, 673
EarI CTCTTC 2 cut(s) 75, 673
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 750
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 4 cut(s) 50, 478, 565, 629
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 75, 769
FatI CATG 4 cut(s) 46, 474, 561, 625
FblI GTMKAC 2 cut(s) 126, 282
Fnu4HI GCNGC 4 cut(s) 207, 734, 737, 762
FokI GGATG 2 cut(s) 166, 314
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 4 cut(s) 207, 734, 737, 762
FspBI CTAG 1 cut(s) 695
GluI GCNGC 4 cut(s) 207, 734, 737, 762
GsaI CCCAGC 1 cut(s) 743
HaeIII GGCC 2 cut(s) 164, 334
HapII CCGG 2 cut(s) 117, 265
HgaI GACGC 2 cut(s) 77, 716
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 4 cut(s) 50, 478, 565, 629
HincII GTYRAC 3 cut(s) 58, 127, 283
HindII GTYRAC 3 cut(s) 58, 127, 283
HinfI GANTC 3 cut(s) 11, 558, 635
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 2 cut(s) 117, 265
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 4 cut(s) 58, 127, 199, 283
Hpy188I TCNGA 5 cut(s) 10, 16, 397, 448, 513
Hpy188III TCNNGA 1 cut(s) 687
Hpy8I GTNNAC 4 cut(s) 58, 127, 199, 283
Hpy99I CGWCG 5 cut(s) 104, 128, 284, 711, 732
HpyAV CCTTC 2 cut(s) 368, 598
HpyCH4III ACNGT 3 cut(s) 463, 544, 717
HpyCH4IV ACGT 2 cut(s) 123, 229
HpyCH4V TGCA 5 cut(s) 76, 478, 496, 547, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 657, 733
HpyF3I CTNAG 4 cut(s) 7, 294, 396, 512
HpySE526I ACGT 2 cut(s) 123, 229
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 4 cut(s) 50, 478, 565, 629
KspAI GTTAAC 1 cut(s) 58
Kzo9I GATC 3 cut(s) 267, 384, 440
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 2 cut(s) 218, 748
LweI GCATC 1 cut(s) 669
MaeI CTAG 1 cut(s) 695
MaeII ACGT 2 cut(s) 123, 229
MalI GATC 3 cut(s) 269, 386, 442
MboI GATC 3 cut(s) 267, 384, 440
MboII GAAGA 5 cut(s) 37, 62, 644, 660, 713
MhlI GDGCHC 2 cut(s) 237, 408
MluCI AATT 3 cut(s) 185, 434, 454
MlyI GAGTC 1 cut(s) 5
MseI TTAA 2 cut(s) 57, 576
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 2 cut(s) 117, 265
MspR9I CCNGG 2 cut(s) 118, 423
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 2 cut(s) 657, 733
NciI CCSGG 1 cut(s) 118
NdeII GATC 3 cut(s) 267, 384, 440
NlaIII CATG 4 cut(s) 50, 478, 565, 629
NruI TCGCGA 1 cut(s) 688
NspI RCATGY 1 cut(s) 478
PcsI WCGNNNNNNNCGW 4 cut(s) 27, 180, 235, 276
PfeI GAWTC 2 cut(s) 558, 635
PkrI GCNGC 4 cut(s) 208, 735, 738, 763
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 262
PsrI GAACNNNNNNTAC 2 cut(s) 113, 145
PvuII CAGCTG 1 cut(s) 739
RruI TCGCGA 1 cut(s) 688
RsaI GTAC 2 cut(s) 158, 553
RsaNI GTAC 2 cut(s) 157, 552
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 408
SalI GTCGAC 2 cut(s) 125, 281
SaqAI TTAA 2 cut(s) 57, 576
SatI GCNGC 4 cut(s) 207, 734, 737, 762
Sau3AI GATC 3 cut(s) 267, 384, 440
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 2 cut(s) 118, 423
SduI GDGCHC 2 cut(s) 237, 408
SfaNI GCATC 1 cut(s) 669
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 3 cut(s) 185, 434, 454
SsiI CCGC 5 cut(s) 50, 250, 276, 733, 761
SspMI CTAG 1 cut(s) 695
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 116, 421
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 3 cut(s) 463, 544, 717
TaiI ACGT 2 cut(s) 126, 232
TaqI TCGA 4 cut(s) 126, 183, 282, 676
TaqII GACCGA 1 cut(s) 113
TasI AATT 3 cut(s) 185, 434, 454
TatI WGTACW 2 cut(s) 156, 551
TauI GCSGC 2 cut(s) 736, 764
TfiI GAWTC 2 cut(s) 558, 635
Tru1I TTAA 2 cut(s) 57, 576
Tru9I TTAA 2 cut(s) 57, 576
TscAI CASTG 2 cut(s) 468, 722
TseI GCWGC 2 cut(s) 206, 736
TspDTI ATGAA 2 cut(s) 17, 35
TspGWI ACGGA 2 cut(s) 117, 227
TspRI CASTG 2 cut(s) 468, 722
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 478
XmiI GTMKAC 2 cut(s) 126, 282
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.