Prupe.2G162800_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21348485 .. 21350202
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G162800.1

Sequence Viewer

Length: 432 bp
ATGGCATTGATTGAAGTTTACCCTGCTGCTGATCAGATGCAGGCAGGTTTTGCAAATTTCAAATATCAAGTGATTGTTGGGATACCATCGGTGGAGTTTCAACGTCACATGATACGGTTGCGCTGTTTTGGAGAGACAGTTTACGCACGCATAACCGATACTGAAGTTAGGCTCTCTGTAGCGAATGAGGAGATTCTTCTGACGAACGAGAATTGCATTATTGGGGGTGATGTAAGTGAAGAAAATCCAGTTACTGCGGTGTTCAGCCTCCATTGCCAGAGCGCAATCATGAAAGCGTCGCATCTGACAAGCAGGGTGTGGTTACTCCACTCCAATTCTTCACTTCCATTTTGCATGCTGAATTTCCCTGTTGGTGCACTGGGTAACCTCATGTTTCACTTTCCCTCACCTGAAGATGGTGATGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

144

Amino Acids

15.91

Weight (kDa)

4.92

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AciI CCGC 1 cut(s) 257
AcsI RAATTY 2 cut(s) 55, 361
AcuI CTGAAG 2 cut(s) 183, 432
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 3 cut(s) 14, 61, 101
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 128
Alw44I GTGCAC 1 cut(s) 375
AlwNI CAGNNNCTG 1 cut(s) 254
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 2 cut(s) 55, 361
AspLEI GCGC 2 cut(s) 123, 284
AsuHPI GGTGA 3 cut(s) 239, 399, 431
BaeGI GKGCMC 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 13
BccI CCATC 2 cut(s) 94, 410
BciVI GTATCC 1 cut(s) 75
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 2 cut(s) 27, 310
BmuI ACTGGG 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse1I ACTGG 2 cut(s) 248, 384
Bse3DI GCAATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 248, 384
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 257
BspHI TCATGA 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 248, 384
BssMI GATC 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 117, 139
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 42, 148, 356
BstEII GGTNACC 1 cut(s) 383
BstHHI GCGC 2 cut(s) 123, 284
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 50, 273
BstNSI RCATGY 1 cut(s) 358
BstPI GGTNACC 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 13
BsuI GTATCC 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 42, 148, 356
CaiI CAGNNNCTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 123, 284
CseI GACGC 1 cut(s) 285
CviAII CATG 4 cut(s) 109, 289, 355, 391
CviJI RGCY 2 cut(s) 172, 267
CviKI_1 RGCY 2 cut(s) 172, 267
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 183, 432
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
FaeI CATG 4 cut(s) 112, 292, 358, 394
FaiI YATR 5 cut(s) 110, 152, 290, 356, 392
FatI CATG 4 cut(s) 108, 288, 354, 390
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GlaI GCGC 2 cut(s) 122, 283
GluI GCNGC 1 cut(s) 27
HgaI GACGC 1 cut(s) 285
HhaI GCGC 2 cut(s) 123, 284
Hin1II CATG 4 cut(s) 112, 292, 358, 394
Hin6I GCGC 2 cut(s) 121, 282
HinP1I GCGC 2 cut(s) 121, 282
HinfI GANTC 1 cut(s) 193
HphI GGTGA 3 cut(s) 239, 399, 431
Hpy166II GTNNAC 3 cut(s) 19, 142, 377
Hpy188I TCNGA 3 cut(s) 36, 201, 306
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 3 cut(s) 19, 142, 377
Hpy99I CGWCG 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 117, 139
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 5 cut(s) 40, 53, 216, 354, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 273
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 112, 292, 358, 394
HspAI GCGC 2 cut(s) 121, 282
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 9 cut(s) 26, 30, 36, 261, 290, 298, 365, 381, 423
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 27, 310
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 4 cut(s) 104, 250, 321, 383
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 4 cut(s) 188, 251, 330, 425
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 4 cut(s) 55, 211, 334, 361
MnlI CCTC 4 cut(s) 181, 278, 398, 415
MwoI GCNNNNNNNGC 2 cut(s) 50, 273
NdeII GATC 1 cut(s) 31
NlaIII CATG 4 cut(s) 112, 292, 358, 394
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 358
PaeI GCATGC 1 cut(s) 358
PagI TCATGA 1 cut(s) 288
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 254
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 379
SetI ASST 4 cut(s) 49, 106, 390, 412
SfaNI GCATC 2 cut(s) 27, 310
SfcI CTRYAG 1 cut(s) 177
SphI GCATGC 1 cut(s) 358
Sse9I AATT 4 cut(s) 55, 211, 334, 361
SsiI CCGC 1 cut(s) 257
TaaI ACNGT 2 cut(s) 117, 139
TaiI ACGT 1 cut(s) 106
TasI AATT 4 cut(s) 55, 211, 334, 361
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 305
TspRI CASTG 1 cut(s) 384
VneI GTGCAC 1 cut(s) 375
XapI RAATTY 2 cut(s) 55, 361
XceI RCATGY 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.