Prupe.2G163300_v2.0.a1

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000347
Physical Location & Seq
Reverse (-)
21359654 .. 21361941
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163300.1

Sequence Viewer

Length: 771 bp
ATGTTTACATTTACCCTGAATCCAACTACTCTTTTTCTAAGGCAAGCCGTGGGAACCTTCGTTCAGATGGATTTCAGAGAAGGCGTGATCTGTGTCGCACCTGACGACGTCACATTGGTGGCAGGGGTGCCAGGCGTGGGCGTCCCTGTCTTAGCCCTGAGGATGAAACCTTATGTGTTCGTCTCCTTTAGCTGCACTGAGAGCGTCTGCCTGGCCTTTGACCTCACTGTCTTCTACCAAAATCTCTTTAAAGTCCTCAAGGGTGATTTACTCCAGCTCTCTGGTAGTGCCAACGCTTATTGGATTGACTTTGATCTCCTTAACTATTCGGAAAAGCTAGAAACTAGGCAAGTCTTGGCAACTCAATTTCCCATGCTTTCAACGCACATTGGTCGGATGAATGTACCTCAGCTCCGAAATCACTATCAAGTAGCCGTCGGGATACCTGCGGAGGACTTTAGGCTTCTTATCATGAAGCTGAGCCAGTTCGGGGAGCTAGTTTATGCAAGCATAACAGCAACTGCAGTTGAGTTCTCTGTGAGAAATGAGAAGGTTATTTTCAAGCAGCCTAAGCAGTGTACTATTAAGGGTGCTGTGGGGGAAGATCCAGTTGTCTTGGTGTTCAATCTGATTCACTCTGACGCAATCGTGAATGCTTCAATTCTGTCAAACGTGGTGTTGTTGTTTGGCCAGACCCAGACCCATGGTTTTTCTGTCGCCCTGAAATTCTTTTTTGGTAGACTTGGTAGCCTCGAGTATTACTTTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

257

Amino Acids

28.58

Weight (kDa)

6.89

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 739
AciI CCGC 1 cut(s) 449
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 1 cut(s) 725
AcyI GRCGYC 2 cut(s) 108, 141
AfaI GTAC 2 cut(s) 405, 580
AfiI CCNNNNNNNGG 2 cut(s) 137, 490
AgsI TTSAA 4 cut(s) 381, 562, 625, 660
AjnI CCWGG 2 cut(s) 130, 210
AleI CACNNNNGTG 1 cut(s) 116
AloI GAACNNNNNNTCC 2 cut(s) 45, 77
AluBI AGCT 6 cut(s) 192, 277, 337, 412, 478, 496
AluI AGCT 6 cut(s) 192, 277, 337, 412, 478, 496
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 599
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 2 cut(s) 213, 688
ApeKI GCWGC 2 cut(s) 192, 565
ApoI RAATTY 1 cut(s) 725
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 752
AxyI CCTNAGG 1 cut(s) 158
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 179, 577
BccI CCATC 1 cut(s) 61
BceAI ACGGC 2 cut(s) 32, 419
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 2 cut(s) 132, 212
BciVI GTATCC 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 3 cut(s) 338, 345, 497
BfmI CTRYAG 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 454
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 2 cut(s) 193, 566
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 2 cut(s) 194, 567
Bme1390I CCNGG 2 cut(s) 132, 212
BmeT110I CYCGRG 1 cut(s) 752
BmiI GGNNCC 2 cut(s) 55, 129
BmrFI CCNGG 2 cut(s) 132, 212
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 2 cut(s) 408, 570
Bpu1102I GCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 108, 141
BsaJI CCNNGG 2 cut(s) 48, 703
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 490
Bse1I ACTGG 2 cut(s) 484, 608
Bse21I CCTNAGG 1 cut(s) 158
BseBI CCWGG 2 cut(s) 132, 212
BseDI CCNNGG 2 cut(s) 48, 703
BseGI GGATG 2 cut(s) 168, 402
BseLI CCNNNNNNNGG 2 cut(s) 137, 490
BseMII CTCAG 4 cut(s) 149, 189, 422, 470
BseNI ACTGG 2 cut(s) 484, 608
BseXI GCAGC 2 cut(s) 179, 577
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 2 cut(s) 215, 690
BshNI GGYRCC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 752
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 137, 490
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 2 cut(s) 215, 690
BsoBI CYCGRG 1 cut(s) 752
Bsp143I GATC 3 cut(s) 87, 313, 604
Bsp1720I GCTNAGC 1 cut(s) 479
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 215, 690
BspCNI CTCAG 4 cut(s) 150, 190, 421, 471
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 55, 129
BspMAI CTGCAG 1 cut(s) 526
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 484, 608
BssECI CCNNGG 2 cut(s) 48, 703
BssMI GATC 3 cut(s) 87, 313, 604
BssNI GRCGYC 2 cut(s) 108, 141
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 2 cut(s) 132, 212
Bst4CI ACNGT 1 cut(s) 229
BstACI GRCGYC 2 cut(s) 108, 141
BstC8I GCNNGC 2 cut(s) 45, 508
BstDEI CTNAG 7 cut(s) 38, 151, 158, 198, 408, 479, 570
BstDSI CCRYGG 2 cut(s) 48, 703
BstF5I GGATG 2 cut(s) 168, 402
BstKTI GATC 3 cut(s) 90, 316, 607
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 87, 313, 604
BstMWI GCNNNNNNNGC 3 cut(s) 201, 382, 571
BstNI CCWGG 2 cut(s) 132, 212
BstSCI CCNGG 2 cut(s) 130, 210
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 179, 577
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 2 cut(s) 281, 704
BstYI RGATCY 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 158
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 2 cut(s) 215, 690
BtgI CCRYGG 2 cut(s) 48, 703
BtsCI GGATG 2 cut(s) 168, 402
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 3 cut(s) 195, 225, 581
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 45, 508
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 471
CseI GACGC 3 cut(s) 130, 193, 650
Csp6I GTAC 2 cut(s) 404, 579
CviAII CATG 3 cut(s) 373, 472, 704
CviQI GTAC 2 cut(s) 404, 579
DdeI CTNAG 7 cut(s) 38, 151, 158, 198, 408, 479, 570
DpnI GATC 3 cut(s) 89, 315, 606
DpnII GATC 3 cut(s) 87, 313, 604
DraI TTTAAA 1 cut(s) 250
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 752
EcoRII CCWGG 2 cut(s) 130, 210
EcoT14I CCWWGG 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 3 cut(s) 376, 475, 707
FaiI YATR 6 cut(s) 174, 374, 473, 504, 512, 705
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 372, 471, 703
FblI GTMKAC 1 cut(s) 739
Fnu4HI GCNGC 2 cut(s) 193, 566
FokI GGATG 2 cut(s) 175, 409
Fsp4HI GCNGC 2 cut(s) 193, 566
FspBI CTAG 3 cut(s) 338, 345, 497
GluI GCNGC 2 cut(s) 193, 566
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 2 cut(s) 215, 690
HgaI GACGC 3 cut(s) 130, 193, 650
Hin1I GRCGYC 2 cut(s) 108, 141
Hin1II CATG 3 cut(s) 376, 475, 707
HinfI GANTC 2 cut(s) 19, 631
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 6, 579, 740
Hpy188I TCNGA 7 cut(s) 66, 77, 331, 396, 416, 630, 640
Hpy188III TCNNGA 3 cut(s) 439, 472, 649
Hpy8I GTNNAC 3 cut(s) 6, 579, 740
Hpy99I CGWCG 2 cut(s) 110, 440
HpyAV CCTTC 3 cut(s) 67, 74, 544
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 2 cut(s) 108, 672
HpyCH4V TGCA 3 cut(s) 195, 506, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 382, 571
HpyF3I CTNAG 7 cut(s) 38, 151, 158, 198, 408, 479, 570
HpySE526I ACGT 2 cut(s) 108, 672
Hsp92I GRCGYC 2 cut(s) 108, 141
Hsp92II CATG 3 cut(s) 376, 475, 707
Kzo9I GATC 3 cut(s) 87, 313, 604
LmnI GCTCC 2 cut(s) 417, 493
Lsp1109I GCAGC 2 cut(s) 179, 577
MaeI CTAG 3 cut(s) 338, 345, 497
MaeII ACGT 2 cut(s) 108, 672
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 89, 315, 606
MboI GATC 3 cut(s) 87, 313, 604
MboII GAAGA 2 cut(s) 223, 614
MflI RGATCY 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 3 cut(s) 365, 660, 725
MluNI TGGCCA 1 cut(s) 690
MmeI TCCRAC 2 cut(s) 47, 374
MnlI CCTC 6 cut(s) 153, 233, 266, 417, 445, 761
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 3 cut(s) 249, 321, 585
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 690
MspR9I CCNGG 2 cut(s) 132, 212
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 2 cut(s) 132, 212
MwoI GCNNNNNNNGC 3 cut(s) 201, 382, 571
NcoI CCATGG 1 cut(s) 703
NdeII GATC 3 cut(s) 87, 313, 604
NlaIII CATG 3 cut(s) 376, 475, 707
NlaIV GGNNCC 2 cut(s) 55, 129
NmuCI GTSAC 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 752
PagI TCATGA 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 2 cut(s) 19, 631
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 194, 567
Psp6I CCWGG 2 cut(s) 130, 210
PspGI CCWGG 2 cut(s) 130, 210
PspN4I GGNNCC 2 cut(s) 55, 129
PspXI VCTCGAGB 1 cut(s) 752
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 2 cut(s) 405, 580
RsaNI GTAC 2 cut(s) 404, 579
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 3 cut(s) 249, 321, 585
SatI GCNGC 2 cut(s) 193, 566
Sau3AI GATC 3 cut(s) 87, 313, 604
ScrFI CCNGG 2 cut(s) 132, 212
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 752
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 257, 752
SmoI CTYRAG 2 cut(s) 257, 752
Sse9I AATT 3 cut(s) 365, 660, 725
SsiI CCGC 1 cut(s) 449
SspMI CTAG 3 cut(s) 338, 345, 497
StyD4I CCNGG 2 cut(s) 130, 210
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 2 cut(s) 111, 675
TaqI TCGA 1 cut(s) 753
TasI AATT 3 cut(s) 365, 660, 725
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 2 cut(s) 19, 631
Tru1I TTAA 3 cut(s) 249, 321, 585
Tru9I TTAA 3 cut(s) 249, 321, 585
TscAI CASTG 3 cut(s) 202, 232, 581
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 192, 565
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 179, 413, 488
TspRI CASTG 3 cut(s) 202, 232, 581
Tth111I GACNNNGTC 1 cut(s) 107
XapI RAATTY 1 cut(s) 725
XhoI CTCGAG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 739
XspI CTAG 3 cut(s) 338, 345, 497
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.