Rorug01G0239000

DNA polymerase processivity factor activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
34420242 .. 34421533
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0239000.1

Sequence Viewer

Length: 1170 bp
ATGGATCTGTCTTTGCTGTTTCTTCGTTTGTCAAAAAGGAAAACCATAGGACGGAACAAAATGTTGTCATTTCTTCGTTTCAGAAGAAAGAATAATGCCATAGTACCTGCTCATTGGAGCTATTTGAGGGTGGATCTTTTGCCAGTGTCATATAGTGCTCTTTCAGAAGCTACTGATAAATTTTCTTCAAGAAATTTGATTGGTGTGGGTAGTTTTGGGTCCGTTTACAAAGTAGCTCTTGTTACCCCATTTGATAGAACTTACCTTTTTTTGGCCAAATATGATCGCGTTCATCTTGTTGCTGTGAAGGTGTTTAACTTGTCACGCCATGGAGCTTCGAGGAGTTTCATAACCGAATGCGAGGTGTTAAGAAATATCAGGCATCGAAATGTGGTCAAGATTGTAACTGCATGTTCTAGTGTCGATTTTTATGGTAATGAATTCAAGGCTCTGGTGTATCAGTACATGGAGAAGGGGAGCTTAGAGGAGTGGTTGCATACAACTTCTGGAACACAACAGGTAAGACGTGCACCTAAGAAATTAAATCTTTATCAGAGGTTAAGCATAGCAATTGATGTTGCTTGTGCGGTAGAATATCTTCATAATCATTGCGAAACTCCAATAGTTCATTGTGATATCAAGCCAAGCAATGTTCTTCTGGACAAGGAGTTTACCGCACATTTATCTGACTTTGGACTAGCAAGGTTTCTCTCAAGAACGAAAAATGATTTTGCAATCGGTTTAAGAGGATCTGTAGGTTATGCCGCGCCAGAGTATGGAATGGGAGGTGAGGTGTCAACATATGGTGACTTGTACAGCTTCGGCATTCTCTTGTTAGAGATATTTTCAGGGAAGAAGCCCACTGATGAGATGTTCTGTGACGGATCAAACTTTCGTAGTTTTTGTAAGGCTGCTTTGTCAAAAGGAGTTACAAAAATTGCAGATCCAGTGCTTCTTCAAGAAGGCAAAGGGGCCGCAAGCATTATCGGCATAAGAGATGAAGAAATTGAAGAATGCTCGAGTGAGTTCTTTAGAATATTTGAAGAATGCTTGAGTGAGATCTTTAGAATTGGTATCGGGTGTTCTACTGAATCACCAAGAGACCGATTGGATATCAGAGATGTTGTATTTTCATTGCGTTACATTAGGGAACGTTTACCTTGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

44.05

Weight (kDa)

8.93

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 64 - 290 2.4e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 65 - 291 3.4e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 776
AccII CGCG 2 cut(s) 288, 767
AciI CCGC 4 cut(s) 587, 675, 765, 975
AclI AACGTT 1 cut(s) 1153
AclWI GGATC 5 cut(s) 12, 141, 757, 892, 938
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 179, 193, 440
AfaI GTAC 3 cut(s) 105, 464, 815
AfiI CCNNNNNNNGG 3 cut(s) 51, 271, 776
AgsI TTSAA 5 cut(s) 189, 445, 959, 1010, 1043
AjiI CACGTC 1 cut(s) 527
AluBI AGCT 6 cut(s) 120, 170, 236, 335, 480, 819
AluI AGCT 6 cut(s) 120, 170, 236, 335, 480, 819
Alw21I GWGCWC 2 cut(s) 160, 532
Alw26I GTCTC 1 cut(s) 1095
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 5 cut(s) 12, 141, 757, 892, 938
Ama87I CYCGRG 1 cut(s) 1018
AoxI GGCC 2 cut(s) 273, 972
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 911
ApoI RAATTY 3 cut(s) 179, 193, 440
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 769
AspS9I GGNCC 2 cut(s) 219, 972
AsuHPI GGTGA 3 cut(s) 800, 818, 1086
AvaI CYCGRG 1 cut(s) 1018
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 275
BarI GAAGNNNNNNTAC 2 cut(s) 582, 614
Bbv12I GWGCWC 2 cut(s) 160, 532
BbvI GCAGC 1 cut(s) 898
BcoDI GTCTC 1 cut(s) 1095
BfaI CTAG 2 cut(s) 417, 698
BfmI CTRYAG 1 cut(s) 753
BfuAI ACCTGC 1 cut(s) 115
BglII AGATCT 1 cut(s) 1059
BisI GCNGC 3 cut(s) 765, 912, 975
BlsI GCNGC 3 cut(s) 766, 913, 976
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 1018
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 219, 972
BmiI GGNNCC 2 cut(s) 220, 973
BmsI GCATC 1 cut(s) 391
BpuEI CTTGAG 2 cut(s) 697, 1072
BsaI GGTCTC 1 cut(s) 1095
BsaJI CCNNGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 271, 776
Bse1I ACTGG 2 cut(s) 143, 947
Bse3DI GCAATG 3 cut(s) 607, 655, 1133
BseDI CCNNGG 1 cut(s) 328
BseLI CCNNNNNNNGG 3 cut(s) 51, 271, 776
BseMI GCAATG 3 cut(s) 607, 655, 1133
BseNI ACTGG 2 cut(s) 143, 947
BseRI GAGGAG 2 cut(s) 355, 500
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 1 cut(s) 898
Bsh1236I CGCG 2 cut(s) 288, 767
BshFI GGCC 2 cut(s) 275, 974
BsiHKAI GWGCWC 2 cut(s) 160, 532
BsiHKCI CYCGRG 1 cut(s) 1018
BslI CCNNNNNNNGG 3 cut(s) 51, 271, 776
BsmAI GTCTC 1 cut(s) 1095
BsmI GAATGC 4 cut(s) 362, 825, 1019, 1052
BsnI GGCC 2 cut(s) 275, 974
Bso31I GGTCTC 1 cut(s) 1095
BsoBI CYCGRG 1 cut(s) 1018
Bsp1286I GDGCHC 2 cut(s) 160, 532
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 4 cut(s) 587, 675, 765, 975
BspANI GGCC 2 cut(s) 275, 974
BspFNI CGCG 2 cut(s) 288, 767
BspLI GGNNCC 2 cut(s) 220, 973
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 5 cut(s) 12, 141, 757, 892, 938
BspTNI GGTCTC 1 cut(s) 1095
BsrDI GCAATG 3 cut(s) 607, 655, 1133
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 2 cut(s) 143, 947
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
BssT1I CCWWGG 1 cut(s) 328
BstAUI TGTACA 1 cut(s) 813
BstC8I GCNNGC 1 cut(s) 979
BstDEI CTNAG 2 cut(s) 481, 534
BstDSI CCRYGG 1 cut(s) 328
BstFNI CGCG 2 cut(s) 288, 767
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 7 cut(s) 7, 136, 286, 752, 887, 946, 1062
BstMAI GTCTC 1 cut(s) 1095
BstMBI GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
BstMWI GCNNNNNNNGC 1 cut(s) 987
BstNSI RCATGY 1 cut(s) 414
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 532
BstUI CGCG 2 cut(s) 288, 767
BstV1I GCAGC 1 cut(s) 898
BstX2I RGATCY 5 cut(s) 4, 133, 749, 943, 1059
BstYI RGATCY 5 cut(s) 4, 133, 749, 943, 1059
BsuRI GGCC 2 cut(s) 275, 974
BtgI CCRYGG 1 cut(s) 328
BtrI CACGTC 1 cut(s) 527
BtsIMutI CAGTG 3 cut(s) 150, 861, 954
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 979
CfoI GCGC 1 cut(s) 769
Cfr13I GGNCC 2 cut(s) 219, 972
Csp6I GTAC 3 cut(s) 104, 463, 814
CviAII CATG 3 cut(s) 329, 411, 466
CviQI GTAC 3 cut(s) 104, 463, 814
DdeI CTNAG 2 cut(s) 481, 534
DpnI GATC 7 cut(s) 6, 135, 285, 751, 886, 945, 1061
DpnII GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 1095
Eco32I GATATC 2 cut(s) 637, 1114
Eco47I GGWCC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 1018
EcoRI GAATTC 1 cut(s) 440
EcoRV GATATC 2 cut(s) 637, 1114
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 332, 414, 469
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 464, 496
FatI CATG 3 cut(s) 328, 410, 465
FauNDI CATATG 1 cut(s) 802
Fnu4HI GCNGC 3 cut(s) 765, 912, 975
Fsp4HI GCNGC 3 cut(s) 765, 912, 975
FspBI CTAG 2 cut(s) 417, 698
GlaI GCGC 1 cut(s) 768
GluI GCNGC 3 cut(s) 765, 912, 975
HaeIII GGCC 2 cut(s) 275, 974
HhaI GCGC 1 cut(s) 769
Hin1II CATG 3 cut(s) 332, 414, 469
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HinfI GANTC 1 cut(s) 1091
HphI GGTGA 3 cut(s) 800, 818, 1086
Hpy166II GTNNAC 5 cut(s) 226, 530, 672, 798, 1157
Hpy188I TCNGA 5 cut(s) 83, 166, 555, 688, 1118
Hpy188III TCNNGA 6 cut(s) 189, 397, 507, 659, 714, 959
Hpy8I GTNNAC 5 cut(s) 226, 530, 672, 798, 1157
HpyAV CCTTC 3 cut(s) 301, 466, 956
HpyCH4IV ACGT 2 cut(s) 526, 1153
HpyCH4V TGCA 5 cut(s) 410, 496, 530, 734, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 987
HpyF3I CTNAG 2 cut(s) 481, 534
HpySE526I ACGT 2 cut(s) 526, 1153
Hsp92II CATG 3 cut(s) 332, 414, 469
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
LmnI GCTCC 3 cut(s) 117, 332, 477
Lsp1109I GCAGC 1 cut(s) 898
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 417, 698
MaeII ACGT 2 cut(s) 526, 1153
MaeIII GTNAC 7 cut(s) 241, 321, 403, 806, 878, 928, 1139
MalI GATC 7 cut(s) 6, 135, 285, 751, 886, 945, 1061
MboI GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 5 cut(s) 4, 133, 749, 943, 1059
MhlI GDGCHC 2 cut(s) 160, 532
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 8 cut(s) 179, 193, 440, 539, 570, 936, 1005, 1068
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 8 cut(s) 120, 333, 355, 478, 549, 740, 779, 784
Mox20I TGGCCA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 597
MscI TGGCCA 1 cut(s) 275
MseI TTAA 6 cut(s) 315, 368, 542, 560, 743, 1168
MslI CAYNNNNRTG 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 275
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 4 cut(s) 362, 825, 1019, 1052
MvnI CGCG 2 cut(s) 288, 767
MwoI GCNNNNNNNGC 1 cut(s) 987
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 802
NdeII GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
NlaIII CATG 3 cut(s) 332, 414, 469
NlaIV GGNNCC 2 cut(s) 220, 973
NmuCI GTSAC 3 cut(s) 321, 806, 878
NspI RCATGY 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 1018
PctI GAATGC 4 cut(s) 362, 825, 1019, 1052
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 1 cut(s) 1091
PflMI CCANNNNNTGG 1 cut(s) 776
PkrI GCNGC 3 cut(s) 766, 913, 976
Psp1406I AACGTT 1 cut(s) 1153
PspN4I GGNNCC 2 cut(s) 220, 973
PspPI GGNCC 2 cut(s) 219, 972
PspXI VCTCGAGB 1 cut(s) 1018
PsrI GAACNNNNNNTAC 2 cut(s) 1066, 1098
PsuI RGATCY 5 cut(s) 4, 133, 749, 943, 1059
RsaI GTAC 3 cut(s) 105, 464, 815
RsaNI GTAC 3 cut(s) 104, 463, 814
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 6 cut(s) 315, 368, 542, 560, 743, 1168
SatI GCNGC 3 cut(s) 765, 912, 975
Sau3AI GATC 7 cut(s) 4, 133, 283, 749, 884, 943, 1059
Sau96I GGNCC 2 cut(s) 219, 972
SduI GDGCHC 2 cut(s) 160, 532
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 753
Sfr274I CTCGAG 1 cut(s) 1018
SinI GGWCC 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 1018
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 3 cut(s) 712, 1018, 1051
SmoI CTYRAG 3 cut(s) 712, 1018, 1051
Sse9I AATT 8 cut(s) 179, 193, 440, 539, 570, 936, 1005, 1068
SsiI CCGC 4 cut(s) 587, 675, 765, 975
SspI AATATT 1 cut(s) 1038
SspMI CTAG 2 cut(s) 417, 698
StyI CCWWGG 1 cut(s) 328
TaiI ACGT 2 cut(s) 529, 1156
TaqI TCGA 4 cut(s) 338, 385, 423, 1019
TaqII GACCGA 1 cut(s) 1119
TasI AATT 8 cut(s) 179, 193, 440, 539, 570, 936, 1005, 1068
TatI WGTACW 2 cut(s) 462, 813
TauI GCSGC 2 cut(s) 767, 977
TfiI GAWTC 1 cut(s) 1091
Tru1I TTAA 6 cut(s) 315, 368, 542, 560, 743, 1168
Tru9I TTAA 6 cut(s) 315, 368, 542, 560, 743, 1168
TscAI CASTG 3 cut(s) 150, 868, 954
TseFI GTSAC 3 cut(s) 321, 806, 878
TseI GCWGC 1 cut(s) 911
Tsp45I GTSAC 3 cut(s) 321, 806, 878
TspDTI ATGAA 7 cut(s) 281, 337, 453, 590, 617, 1014, 1122
TspGWI ACGGA 3 cut(s) 67, 211, 897
TspRI CASTG 3 cut(s) 150, 868, 954
Van91I CCANNNNNTGG 1 cut(s) 776
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 3 cut(s) 179, 193, 440
XceI RCATGY 1 cut(s) 414
XhoI CTCGAG 1 cut(s) 1018
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 2 cut(s) 417, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.