Rmu_sc0006326.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006326.1
OG0000347
Physical Location & Seq
Forward (+)
174856 .. 175674
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006326.1_g000049.1.cds

Sequence Viewer

Length: 570 bp
atgtggcggtggttcgacctcaggcttgaagctcccaaagcgatttcgctgaaggaggccgtcggagccatggctcaagtagccttaaccgacatagagctcgacggcagcccccaaaaggccaacctctgcgtcactccggagatggtcgcactggtttccaaaacccaggctactgatgccgtcagcgtgctgctgctgccaaaaccgttgatgacgagctttaagtgctacgaaagccggaatctgcagttcaatctggaaatcctccaccgccaattgcagctgaacaatctgcatgcgctcattctttatggtgaggtagaaagtaaggatatgcttggctatgaagatcctgatgaacggggtgatcatgtgattttctatgagcttgagaatggtcctgacaggttgattcactcctttaaaatgccactgctttcatggaatcggaatgcaatggacctaagattcttagcaaatcaatatccagtgcgccttggcttgtcttcagcgagattttgtgagcttctcactgatatggattcttttgggtgtacaggtagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.44

Weight (kDa)

5.09

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 7, 274
AclWI GGATC 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 71, 495
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 29, 256
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 6 cut(s) 32, 100, 222, 286, 391, 529
AluI AGCT 6 cut(s) 32, 100, 222, 286, 391, 529
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 57, 120
ApeKI GCWGC 5 cut(s) 108, 193, 196, 199, 283
AspLEI GCGC 2 cut(s) 304, 498
AspS9I GGNCC 2 cut(s) 401, 463
AsuHPI GGTGA 2 cut(s) 329, 380
AvaII GGWCC 2 cut(s) 401, 463
AxyI CCTNAGG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 5 cut(s) 120, 180, 183, 186, 295
BccI CCATC 1 cut(s) 139
BceAI ACGGC 3 cut(s) 44, 121, 167
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 5 cut(s) 109, 194, 197, 200, 284
BlsI GCNGC 5 cut(s) 110, 195, 198, 201, 285
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 401, 463
BmgT120I GGNCC 2 cut(s) 401, 463
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 60, 413
BsaJI CCNNGG 3 cut(s) 69, 168, 499
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 159, 491
Bse21I CCTNAGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 69, 168, 499
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 159, 491
BseXI GCAGC 5 cut(s) 120, 180, 183, 186, 295
BshFI GGCC 2 cut(s) 59, 122
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 140, 241
BslI CCNNNNNNNGG 1 cut(s) 118
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 2 cut(s) 59, 122
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 2 cut(s) 352, 370
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 7, 274
BspANI GGCC 2 cut(s) 59, 122
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 2 cut(s) 159, 491
BssECI CCNNGG 3 cut(s) 69, 168, 499
BssMI GATC 2 cut(s) 352, 370
BssT1I CCWWGG 2 cut(s) 69, 499
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 210
BstAUI TGTACA 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 191, 300
BstDEI CTNAG 3 cut(s) 20, 467, 475
BstDSI CCRYGG 1 cut(s) 69
BstHHI GCGC 2 cut(s) 304, 498
BstKTI GATC 2 cut(s) 355, 373
BstMBI GATC 2 cut(s) 352, 370
BstMWI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 248
BstV1I GCAGC 5 cut(s) 120, 180, 183, 186, 295
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 2 cut(s) 59, 122
BtgI CCRYGG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 4 cut(s) 152, 434, 498, 534
Cac8I GCNNGC 2 cut(s) 191, 300
CfoI GCGC 2 cut(s) 304, 498
Cfr13I GGNCC 2 cut(s) 401, 463
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 558
CviAII CATG 4 cut(s) 70, 299, 374, 444
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 3 cut(s) 20, 467, 475
DpnI GATC 2 cut(s) 354, 372
DpnII GATC 2 cut(s) 352, 370
DraI TTTAAA 1 cut(s) 427
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 69, 499
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 401, 463
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 71, 495
Eco81I CCTNAGG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 69, 499
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 69, 499
FaeI CATG 4 cut(s) 73, 302, 377, 447
FatI CATG 4 cut(s) 69, 298, 373, 443
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 5 cut(s) 109, 194, 197, 200, 284
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 109, 194, 197, 200, 284
GlaI GCGC 2 cut(s) 303, 497
GluI GCNGC 5 cut(s) 109, 194, 197, 200, 284
HaeIII GGCC 2 cut(s) 59, 122
HapII CCGG 2 cut(s) 140, 241
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 304, 498
Hin1II CATG 4 cut(s) 73, 302, 377, 447
Hin6I GCGC 2 cut(s) 302, 496
HinP1I GCGC 2 cut(s) 302, 496
HinfI GANTC 5 cut(s) 244, 415, 448, 471, 545
HpaII CCGG 2 cut(s) 140, 241
HphI GGTGA 2 cut(s) 329, 380
Hpy166II GTNNAC 1 cut(s) 558
Hpy188I TCNGA 2 cut(s) 65, 453
Hpy188III TCNNGA 4 cut(s) 140, 260, 356, 404
Hpy8I GTNNAC 1 cut(s) 558
Hpy99I CGWCG 2 cut(s) 65, 107
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 250, 283, 298, 458
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
HpyF3I CTNAG 3 cut(s) 20, 467, 475
Hsp92II CATG 4 cut(s) 73, 302, 377, 447
HspAI GCGC 2 cut(s) 302, 496
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 352, 370
LmnI GCTCC 2 cut(s) 37, 65
Lsp1109I GCAGC 5 cut(s) 120, 180, 183, 186, 295
LweI GCATC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 354, 372
MboI GATC 2 cut(s) 352, 370
MboII GAAGA 2 cut(s) 362, 501
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 29, 49, 137, 278, 313
MroI TCCGGA 1 cut(s) 139
MseI TTAA 3 cut(s) 86, 225, 426
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 2 cut(s) 140, 241
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 7 cut(s) 38, 65, 80, 179, 199, 228, 237
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 352, 370
NlaIII CATG 4 cut(s) 73, 302, 377, 447
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 302
PaeI GCATGC 1 cut(s) 302
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 5 cut(s) 244, 415, 448, 471, 545
PkrI GCNGC 5 cut(s) 110, 195, 198, 201, 285
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 401, 463
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 86, 225, 426
SatI GCNGC 5 cut(s) 109, 194, 197, 200, 284
Sau3AI GATC 2 cut(s) 352, 370
Sau96I GGNCC 2 cut(s) 401, 463
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 248
SinI GGWCC 2 cut(s) 401, 463
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 75, 392
SmoI CTYRAG 2 cut(s) 75, 392
SphI GCATGC 1 cut(s) 302
Sse9I AATT 1 cut(s) 278
SsiI CCGC 2 cut(s) 7, 274
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 69, 499
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 15, 102
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 5 cut(s) 244, 415, 448, 471, 545
Tru1I TTAA 3 cut(s) 86, 225, 426
Tru9I TTAA 3 cut(s) 86, 225, 426
TscAI CASTG 4 cut(s) 159, 441, 498, 541
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 5 cut(s) 108, 193, 196, 199, 283
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 363, 375, 432
TspRI CASTG 4 cut(s) 159, 441, 498, 541
VpaK11BI GGWCC 2 cut(s) 401, 463
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.