RchiOBHm_Chr1g0353881

DNA polymerase processivity factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000347
Physical Location & Seq
Forward (+)
47076821 .. 47081051
4231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGACCTAGGGTTCGTAGGATCTGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTCGTGCCTTTATCACTCAATCGGATTCTCATGGGTTTAAAGTTCATGCCAGAGTGTCACAAACCCAAGTTGTGCTCCGGGTAGTGAATAACGAGATGGTCTTCAGACCAGAGCTTGGGGTTTGCGAGATTGAGAGTGAAGGAGGTAGATATCCGTTTGTGTTGAAGTTTGATCTCCAGCACAAGAGAGCGTTTCTCAATGCTGCTATGCTGTCAGAGATGGTATGGATACTTAACTCTGCGGATTTGATCACCGTGCTGAGCTTCCCTATTGTTGGCCTGGGTAACCTCATGTTTACCCAACTGAACCCTGTGGCGCCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166
Pfam Domains
Protein Families
PCNA_C PCNA_N Vezatin

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

5.86

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09240 FvH4_7g13760 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13770 FvH4_7g13780
prunus_persica Prupe.2G162800_v2.0.a1 Prupe.2G163000_v2.0.a1 Prupe.2G163100_v2.0.a1 Prupe.2G163200_v2.0.a1 Prupe.2G163300_v2.0.a1 Prupe.2G163400_v2.0.a1 Prupe.2G163600_v2.0.a1 Prupe.2G163700_v2.0.a1
pyrus_communis pycom07g13980
rosa_chinensis RchiOBHm_Chr1g0331901 RchiOBHm_Chr1g0353761 RchiOBHm_Chr1g0353841 RchiOBHm_Chr1g0353861 RchiOBHm_Chr1g0353871 RchiOBHm_Chr1g0353881 RchiOBHm_Chr1g0353981 RchiOBHm_Chr2g0131681
rosa_laevigata RLG00000000740 RLG00000028239 RLG00000028240 RLG00000028246 RLG00000028247 RLG00000028248 RLG00000028250 RLG00000028259 RLG00000028419 RLG00000029705
rosa_multiflora Rmu_sc0001763.1_g000004 Rmu_sc0005552.1_g000004 Rmu_sc0005552.1_g000006 Rmu_sc0005947.1_g000015 Rmu_sc0006326.1_g000048 Rmu_sc0006326.1_g000049 Rmu_sc0007658.1_g000010 Rmu_sc0007658.1_g000012 Rmu_sc0021704.1_g000001 Rmu_sc0026369.1_g000001
rosa_roxburghii Rroxscaffold_1G00022360 Rroxscaffold_4G00290550 Rroxscaffold_4G00301410 Rroxscaffold_4G00301420 Rroxscaffold_4G00301500 Rroxscaffold_4G00301510 Rroxscaffold_4G00301520 Rroxscaffold_4G00301540 Rroxscaffold_4G00301670
rosa_rugosa Rorug01G0237800 Rorug01G0238800 Rorug01G0238900 Rorug01G0238900 Rorug01G0238900 Rorug01G0239000 Rorug01G0239100 Rorug01G0239200 Rorug01G0239500 Rorug01G0239500 Rorug01G0239600 Rorug01G0239700
rosa_samantha Rh1AG231800 Rh1AG249800 Rh1AG250400 Rh1AG250500 Rh1AG250700 Rh1AG251000 Rh1AG251100 Rh1BG220100 Rh1BG221000 Rh1BG221100 Rh1BG221300 Rh1BG221500 Rh1BG221600 Rh1BG222000 Rh1BG222600 Rh1BG222700 Rh1CG232400 Rh1CG233200 Rh1CG233400 Rh1CG233500 Rh1CG233700 Rh1CG234200 Rh1CG234300 Rh1CG234400 Rh1CG235000 Rh1CG235100 Rh1CG235200 Rh1DG247100 Rh1DG247900 Rh1DG248000 Rh1DG248200 Rh1DG248500 Rh1DG249400 Rh1DG249500 Rh4BG391700 Rh6AG423500 Rh7BG455700 Rh7CG500500 Rh7DG468700
rosa_wichuraiana Rw1G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 302
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 36, 148
AcyI GRCGYC 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 176, 335
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 175, 324
AluI AGCT 2 cut(s) 175, 324
Alw21I GWGCWC 1 cut(s) 138
AlwI GGATC 1 cut(s) 28
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 263
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspA2I CCTAGG 1 cut(s) 7
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 7
BanI GGYRCC 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 42, 154
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 151, 274
BciT130I CCWGG 1 cut(s) 341
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 380
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 1 cut(s) 264
BlnI CCTAGG 1 cut(s) 7
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 140, 341
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 140, 341
BpiI GAAGAC 2 cut(s) 42, 154
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 7, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 335
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 7, 340
BseLI CCNNNNNNNGG 2 cut(s) 176, 335
BseMII CTCAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 176, 335
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 20, 232, 309
Bsp1720I GCTNAGC 1 cut(s) 320
BspACI CCGC 1 cut(s) 302
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 7, 340
BssMI GATC 3 cut(s) 20, 232, 309
BssNI GRCGYC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 377
BstDEI CTNAG 1 cut(s) 320
BstEII GGTNACC 1 cut(s) 344
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 23, 235, 312
BstMBI GATC 3 cut(s) 20, 232, 309
BstNI CCWGG 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 138, 339
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 2 cut(s) 42, 154
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 339
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 3 cut(s) 92, 107, 352
CviJI RGCY 5 cut(s) 40, 45, 175, 324, 339
CviKI_1 RGCY 5 cut(s) 40, 45, 175, 324, 339
DdeI CTNAG 1 cut(s) 320
DinI GGCGCC 1 cut(s) 378
DpnI GATC 3 cut(s) 22, 234, 311
DpnII GATC 3 cut(s) 20, 232, 309
DraI TTTAAA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 7
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 36, 148
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 339
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 7
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 3 cut(s) 95, 110, 355
FaiI YATR 5 cut(s) 93, 108, 269, 286, 353
FatI CATG 3 cut(s) 91, 106, 351
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 139
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 3 cut(s) 95, 110, 355
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 5 cut(s) 25, 55, 85, 167, 277
Hpy8I GTNNAC 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 3 cut(s) 95, 110, 355
HspAI GCGC 1 cut(s) 377
KasI GGCGCC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 20, 232, 309
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 124, 152, 183, 251, 326, 353
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 117, 344
MalI GATC 3 cut(s) 22, 234, 311
MboI GATC 3 cut(s) 20, 232, 309
MboII GAAGA 2 cut(s) 42, 154
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 382
Mly113I GGCGCC 1 cut(s) 377
MnlI CCTC 3 cut(s) 30, 197, 359
MseI TTAA 2 cut(s) 99, 294
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 140, 341
MvaI CCWGG 1 cut(s) 341
NarI GGCGCC 1 cut(s) 377
NciI CCSGG 1 cut(s) 140
NdeII GATC 3 cut(s) 20, 232, 309
NlaIII CATG 3 cut(s) 95, 110, 355
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 20
SaqAI TTAA 2 cut(s) 99, 294
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 20, 232, 309
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 140, 341
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 9, 177, 208, 326, 351
SfoI GGCGCC 1 cut(s) 378
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 382
SsiI CCGC 1 cut(s) 302
SspDI GGCGCC 1 cut(s) 376
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 138, 339
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 316
TasI AATT 1 cut(s) 382
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 99, 294
Tru9I TTAA 2 cut(s) 99, 294
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 4
XmaJI CCTAGG 1 cut(s) 7
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.