RchiOBHm_Chr1g0368771

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000390
Physical Location & Seq
Forward (+)
58745144 .. 58748307
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59310

Sequence Viewer

Length: 2148 bp
ATGCAGGCTTATATTGTGTATATGGGCGACAAGCCAAAGAACGGGGTGCCAGTAACACCTGATCTTCATGTGAATATTCTACGAGATGTGGTTGACAACAACATTAATAATGATATTTCACATGAAGCTTTGCTTCTTCACAGCTATGGGAGAAGTTTCCATGGATTTGCTGCAATGCTCACAGAACAAGAAGTACAAAAACTAGCTGGAATGGATGGTGTAGTGTCTATCTTCCCAAGCAAAAAGAAGAGCTACAAAACAACAAAGTCATGGGACTTCCTTGGGTTTCCACAAACGGTGGAGATAGGCCCCCTTGAAAGGGAAATCATCATTGGTGTGATCGATAGTGGAATTTGGCCAGAGTCGGACAGCTTTAGTGATGTTGGTTTTGGTCCTCCACCTAAAAAATGGAAAGGCGTGTGTCAAGGCAATGAGAACTTTACTTGTAACAACAAAATCATCGGAGCACGGTATTACCATCATTCTCGACCCTTCAAAGAAGGAGACATTGAGTCTCCAAGAGACTCAAATGGTCATGGAACCCACTGCGCATCAACAGTAGCTGGGAATTTAGTGAGAAATGCAAGCCAAAATGGTTTAGGGTTGGGAACAGCAAGAGGAGGAGTGCCATCAGCACATATTGCAGTGTACAAAGTATGCTGGGAGGATAAATGTGATGAAGCTGACGTTTTAAGGGCATTCGATGATGCCATTGCTGATGGTGTCGACATTATCAGTGCTTCCATCGGAGGTGAAGTTCCAAATGATTTTTTGCATGACGCACATATAATTGGGTCATTTCACGCCATAAAAAATGGGATATTGTGTTCGATGGCTGCTGGTAACGAAGGTCCAAAAAAAAAAACTGTGACAAACTTTGTCCCATGGGATCTTTCTGTGGCTGCTACCACCATAAACCGCCAGTTCATCACCAAGCTTCAATTGGGTAATGGTAAAATCTATGAGGGAATTTCACCTAACGTATTTGATCTCAAGGGTAAATTCCATCTTTTAATTTATGGTGGAGACGCACCCAATAAAACAGAAGGTGGTAACAAGACTATGTCCAGGTATTGTTCCCCAAATAGCTTAGAAAAAGAATTGGTCAAAGGTAAAATTGTGCTTTGTGATAAAGGCCCTACTAAGGATGCGATTGAGAATGGGATTGGGGCGATACAGGGTCGTGCAATCGGAGTTATACTGACAGGCGAAAAACTTGCTGAGGAGTCCCCTGACGCTTATCCCATCCCTTCAACTTACGTCAATTTTGAAGAAAATAGCAACATTTACAAATACATAAATCAAACGGGGAACCCCACTGCAACAATTTGGAAAAGTCAAGAGATTAATGATGTATTGGCTCCATATGTGCCCTATTTCTCATCAAGAGGTCCAAATCCTATGAATGCCAACATTCTCAAGCCAGACTTAGCTGCTCCAGGAACTTACATTCTAGCAGCAGTTCCCCCAACTGATGGTGACAGTAGAGCTGGATATGACTTTAAAACTGGGACATCAATGGCATGCCCCCATGCTACTGCCGTTGCTGCATACGTCAAATCATTTCACCCTGAATGGTCACCAGCTGCTATCAAATCAGCTCTCATCACTACTGCTAAACCTATGAGTGCCAAAACTAGCCCGCAAGCTGAATTTGCATATGGAGCTGGCCTAATCAATCCTTCTAGGGCTCCATATCCTGGTTTGATATACGATCTTGATGTACAAGACTATGTAGATTTTTTGTGTTCACAAGGATACAGTGGTAAACTATTGGAACAAGTAACCGGGGACAAGACTAGCTCATGCTCATCAAAATCTAATAATGAAAAAGCCATTGATCTGAACTATCCTTCTTTTACTCTCTGCATTAAGGATCCAGAATTCGTCAATGGGGTCTTCCATAGAACTGTCACTAATGTTGGATCATCGAACTCCACATACATAGCTAAACTGTTGGCTCCATCGGGACTCAAAATCAATGTGGATCCAAGTGTGTTGTCGTTCACATCTCTAGGACAAAAGAAATCTTTTGTTGTCACAGTTAAAGGGCCGATTGAGAAATCAAATATAGCCTCTGCGTCTTTAGTGTGGGATGATGGTACTTTCCGTGTCAGGAGCCCCATCGTTGTCTATGTTACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

715

Amino Acids

77.16

Weight (kDa)

6.37

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 4 - 82 2.6e-13 Peptidase inhibitor I9
Peptidase_S8 PF00082 107 - 557 3.2e-44 Subtilase family
fn3_6 PF17766 614 - 711 2.3e-26 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 2 cut(s) 1475, 1700
AccI GTMKAC 1 cut(s) 726
AciI CCGC 2 cut(s) 919, 1643
AclWI GGATC 6 cut(s) 897, 1871, 1884, 1933, 1982, 1995
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 6 cut(s) 351, 568, 969, 1001, 1652, 1883
AfaI GTAC 4 cut(s) 195, 650, 1725, 2104
AfiI CCNNNNNNNGG 6 cut(s) 41, 318, 319, 1144, 1475, 1700
AgsI TTSAA 5 cut(s) 317, 496, 941, 1254, 1271
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 3 cut(s) 1067, 1438, 1699
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AloI GAACNNNNNNTCC 4 cut(s) 741, 773, 811, 843
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 4 cut(s) 498, 516, 519, 1020
AlwI GGATC 6 cut(s) 897, 1871, 1884, 1933, 1982, 1995
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 5 cut(s) 307, 356, 1135, 1669, 2051
ApeKI GCWGC 7 cut(s) 170, 836, 902, 1433, 1457, 1547, 1586
ApoI RAATTY 6 cut(s) 351, 568, 969, 1001, 1652, 1883
AseI ATTAAT 2 cut(s) 105, 1347
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 6 cut(s) 308, 392, 851, 1136, 1391, 2051
AsuC2I CCSGG 1 cut(s) 1789
AsuHPI GGTGA 6 cut(s) 764, 922, 966, 1490, 1559, 1572
AvaII GGWCC 3 cut(s) 392, 851, 1391
BaeGI GKGCMC 1 cut(s) 1374
BaeI ACNNNNGTAYC 2 cut(s) 1750, 1783
BalI TGGCCA 1 cut(s) 358
BamHI GGATCC 2 cut(s) 1876, 1987
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 1693, 2123
BbsI GAAGAC 1 cut(s) 1891
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 1221
BbvI GCAGC 7 cut(s) 157, 823, 889, 1420, 1469, 1534, 1573
BceAI ACGGC 1 cut(s) 1526
BcgI CGANNNNNNTGC 2 cut(s) 1199, 1233
BciT130I CCWGG 3 cut(s) 1069, 1440, 1701
BciVI GTATCC 1 cut(s) 1751
BcnI CCSGG 1 cut(s) 1789
BcoDI GTCTC 4 cut(s) 498, 516, 519, 1020
BfaI CTAG 6 cut(s) 203, 1454, 1638, 1686, 1800, 2015
BfuI GTATCC 1 cut(s) 1751
BisI GCNGC 7 cut(s) 171, 837, 903, 1434, 1458, 1548, 1587
BlsI GCNGC 7 cut(s) 172, 838, 904, 1435, 1459, 1549, 1588
Bme1390I CCNGG 4 cut(s) 1069, 1440, 1701, 1789
Bme18I GGWCC 3 cut(s) 392, 851, 1391
BmeRI GACNNNNNGTC 1 cut(s) 511
BmgT120I GGNCC 6 cut(s) 308, 392, 851, 1136, 1391, 2051
BmrFI CCNGG 4 cut(s) 1069, 1440, 1701, 1789
BmrI ACTGGG 1 cut(s) 1518
BmsI GCATC 3 cut(s) 560, 697, 1138
BmuI ACTGGG 1 cut(s) 1518
BpiI GAAGAC 1 cut(s) 1891
BpmI CTGGAG 1 cut(s) 1422
Bpu10I CCTNAGC 1 cut(s) 1221
BpuEI CTTGAG 2 cut(s) 977, 1403
BpuMI CCSGG 1 cut(s) 1789
Bsa29I ATCGAT 1 cut(s) 342
BsaJI CCNNGG 4 cut(s) 160, 280, 884, 1788
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 318, 319, 1144, 1475, 1700
Bse1I ACTGG 3 cut(s) 50, 922, 1513
Bse3DI GCAATG 3 cut(s) 180, 436, 711
BseBI CCWGG 3 cut(s) 1069, 1440, 1701
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 160, 280, 884, 1788
BseGI GGATG 4 cut(s) 220, 1153, 1245, 2101
BseLI CCNNNNNNNGG 6 cut(s) 41, 318, 319, 1144, 1475, 1700
BseMI GCAATG 3 cut(s) 180, 436, 711
BseMII CTCAG 1 cut(s) 1212
BseNI ACTGG 3 cut(s) 50, 922, 1513
BseRI GAGGAG 3 cut(s) 633, 636, 1238
BseSI GKGCMC 1 cut(s) 1374
BseXI GCAGC 7 cut(s) 157, 823, 889, 1420, 1469, 1534, 1573
BseYI CCCAGC 2 cut(s) 563, 660
BshFI GGCC 5 cut(s) 309, 358, 1137, 1671, 2053
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 1788
BslFI GGGAC 6 cut(s) 287, 866, 1213, 1525, 1805, 1983
BslI CCNNNNNNNGG 6 cut(s) 41, 318, 319, 1144, 1475, 1700
BsmAI GTCTC 4 cut(s) 498, 516, 519, 1020
BsmBI CGTCTC 1 cut(s) 1020
BsmFI GGGAC 6 cut(s) 287, 866, 1213, 1525, 1805, 1983
BsmI GAATGC 2 cut(s) 698, 1411
BsnI GGCC 5 cut(s) 309, 358, 1137, 1671, 2053
Bsp1286I GDGCHC 4 cut(s) 469, 1374, 1693, 2123
Bsp1407I TGTACA 2 cut(s) 648, 1723
Bsp143I GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
Bsp19I CCATGG 2 cut(s) 160, 884
BspACI CCGC 2 cut(s) 919, 1643
BspANI GGCC 5 cut(s) 309, 358, 1137, 1671, 2053
BspCNI CTCAG 1 cut(s) 1213
BspDI ATCGAT 1 cut(s) 342
BspPI GGATC 6 cut(s) 897, 1871, 1884, 1933, 1982, 1995
BspQI GCTCTTC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 3 cut(s) 180, 436, 711
BsrGI TGTACA 2 cut(s) 648, 1723
BsrI ACTGG 3 cut(s) 50, 922, 1513
BssECI CCNNGG 4 cut(s) 160, 280, 884, 1788
BssMI GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
BssT1I CCWWGG 3 cut(s) 160, 280, 884
Bst2UI CCWGG 3 cut(s) 1069, 1440, 1701
Bst6I CTCTTC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 641
BstAUI TGTACA 2 cut(s) 648, 1723
BstC8I GCNNGC 6 cut(s) 6, 586, 1525, 1643, 1647, 1669
BstDEI CTNAG 4 cut(s) 1090, 1143, 1221, 1429
BstDSI CCRYGG 2 cut(s) 160, 884
BstEII GGTNACC 1 cut(s) 1578
BstF5I GGATG 4 cut(s) 220, 1153, 1245, 2101
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 9 cut(s) 64, 342, 892, 991, 1717, 1843, 1879, 1928, 1990
BstMAI GTCTC 4 cut(s) 498, 516, 519, 1020
BstMBI GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
BstMWI GCNNNNNNNGC 4 cut(s) 641, 1547, 1655, 1664
BstNI CCWGG 3 cut(s) 1069, 1440, 1701
BstNSI RCATGY 1 cut(s) 1527
BstPI GGTNACC 1 cut(s) 1578
BstSCI CCNGG 4 cut(s) 1067, 1438, 1699, 1787
BstSLI GKGCMC 1 cut(s) 1374
BstV1I GCAGC 7 cut(s) 157, 823, 889, 1420, 1469, 1534, 1573
BstV2I GAAGAC 1 cut(s) 1891
BstX2I RGATCY 3 cut(s) 889, 1876, 1987
BstYI RGATCY 3 cut(s) 889, 1876, 1987
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 1 cut(s) 1751
BsuRI GGCC 5 cut(s) 309, 358, 1137, 1671, 2053
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 2 cut(s) 160, 884
BtsCI GGATG 4 cut(s) 220, 1153, 1245, 2101
BtsI GCAGTG 3 cut(s) 544, 651, 1317
BtsIMutI CAGTG 5 cut(s) 544, 651, 742, 1317, 1768
Cac8I GCNNGC 6 cut(s) 6, 586, 1525, 1643, 1647, 1669
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 551
Cfr13I GGNCC 6 cut(s) 308, 392, 851, 1136, 1391, 2051
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 4 cut(s) 788, 1037, 1244, 2070
Csp6I GTAC 4 cut(s) 194, 649, 1724, 2103
CviQI GTAC 4 cut(s) 194, 649, 1724, 2103
DdeI CTNAG 4 cut(s) 1090, 1143, 1221, 1429
DpnI GATC 9 cut(s) 63, 341, 891, 990, 1716, 1842, 1878, 1927, 1989
DpnII GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
DraI TTTAAA 1 cut(s) 1504
DriI GACNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 242
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 3 cut(s) 160, 280, 884
Eco24I GRGCYC 2 cut(s) 1693, 2123
Eco47I GGWCC 3 cut(s) 392, 851, 1391
Eco91I GGTNACC 1 cut(s) 1578
EcoO109I RGGNCCY 2 cut(s) 308, 1136
EcoO65I GGTNACC 1 cut(s) 1578
EcoRI GAATTC 1 cut(s) 1883
EcoRII CCWGG 3 cut(s) 1067, 1438, 1699
EcoT14I CCWWGG 3 cut(s) 160, 280, 884
EcoT38I GRGCYC 2 cut(s) 1693, 2123
ErhI CCWWGG 3 cut(s) 160, 280, 884
Esp3I CGTCTC 1 cut(s) 1020
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 1412, 1444
FaqI GGGAC 6 cut(s) 287, 866, 1213, 1525, 1805, 1983
FauI CCCGC 1 cut(s) 1650
FauNDI CATATG 2 cut(s) 1366, 1660
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 7 cut(s) 171, 837, 903, 1434, 1458, 1548, 1587
FokI GGATG 4 cut(s) 227, 1160, 1232, 2108
FriOI GRGCYC 2 cut(s) 1693, 2123
Fsp4HI GCNGC 7 cut(s) 171, 837, 903, 1434, 1458, 1548, 1587
FspBI CTAG 6 cut(s) 203, 1454, 1638, 1686, 1800, 2015
FspI TGCGCA 1 cut(s) 550
GlaI GCGC 1 cut(s) 550
GluI GCNGC 7 cut(s) 171, 837, 903, 1434, 1458, 1548, 1587
GsaI CCCAGC 2 cut(s) 567, 664
GsuI CTGGAG 1 cut(s) 1422
HaeIII GGCC 5 cut(s) 309, 358, 1137, 1671, 2053
HapII CCGG 1 cut(s) 1788
HgaI GACGC 4 cut(s) 788, 1037, 1244, 2070
HhaI GCGC 1 cut(s) 551
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HincII GTYRAC 2 cut(s) 94, 727
HindII GTYRAC 2 cut(s) 94, 727
HindIII AAGCTT 2 cut(s) 126, 935
HinfI GANTC 5 cut(s) 362, 512, 524, 1226, 1971
HpaII CCGG 1 cut(s) 1788
HphI GGTGA 6 cut(s) 764, 922, 966, 1490, 1559, 1572
Hpy166II GTNNAC 6 cut(s) 94, 649, 727, 1751, 1769, 2007
Hpy188I TCNGA 5 cut(s) 367, 464, 749, 1193, 1845
Hpy188III TCNNGA 7 cut(s) 486, 1340, 1386, 1718, 1880, 1968, 2116
Hpy8I GTNNAC 6 cut(s) 94, 649, 727, 1751, 1769, 2007
HpyAV CCTTC 7 cut(s) 494, 502, 842, 1040, 1260, 1692, 1863
HpyCH4IV ACGT 4 cut(s) 687, 981, 1260, 1554
HpyF10VI GCNNNNNNNGC 4 cut(s) 641, 1547, 1655, 1664
HpyF3I CTNAG 4 cut(s) 1090, 1143, 1221, 1429
HpySE526I ACGT 4 cut(s) 687, 981, 1260, 1554
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 7 cut(s) 464, 1366, 1441, 1664, 1696, 1966, 2118
Lsp1109I GCAGC 7 cut(s) 157, 823, 889, 1420, 1469, 1534, 1573
LweI GCATC 3 cut(s) 560, 697, 1138
MaeI CTAG 6 cut(s) 203, 1454, 1638, 1686, 1800, 2015
MaeII ACGT 4 cut(s) 687, 981, 1260, 1554
MalI GATC 9 cut(s) 63, 341, 891, 990, 1716, 1842, 1878, 1927, 1989
MboI GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
MboII GAAGA 6 cut(s) 56, 128, 223, 259, 1283, 1891
MfeI CAATTG 1 cut(s) 941
MflI RGATCY 3 cut(s) 889, 1876, 1987
MhlI GDGCHC 4 cut(s) 469, 1374, 1693, 2123
MlsI TGGCCA 1 cut(s) 358
MluNI TGGCCA 1 cut(s) 358
MlyI GAGTC 5 cut(s) 371, 518, 521, 1235, 1965
MmeI TCCRAC 2 cut(s) 345, 1903
MnlI CCTC 9 cut(s) 405, 611, 614, 658, 743, 958, 1216, 1382, 2086
Mox20I TGGCCA 1 cut(s) 358
MscI TGGCCA 1 cut(s) 358
MseI TTAA 8 cut(s) 105, 692, 1013, 1347, 1503, 1872, 2046, 2146
MslI CAYNNNNRTG 2 cut(s) 144, 335
Msp20I TGGCCA 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 1586
MspI CCGG 1 cut(s) 1788
MspR9I CCNGG 4 cut(s) 1069, 1440, 1701, 1789
MunI CAATTG 1 cut(s) 941
Mva1269I GAATGC 2 cut(s) 698, 1411
MvaI CCWGG 3 cut(s) 1069, 1440, 1701
MwoI GCNNNNNNNGC 4 cut(s) 641, 1547, 1655, 1664
NciI CCSGG 1 cut(s) 1789
NcoI CCATGG 2 cut(s) 160, 884
NdeI CATATG 2 cut(s) 1366, 1660
NdeII GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
NmuCI GTSAC 5 cut(s) 868, 1478, 1578, 1912, 2038
NsbI TGCGCA 1 cut(s) 550
NspI RCATGY 1 cut(s) 1527
PaeI GCATGC 1 cut(s) 1527
PciSI GCTCTTC 1 cut(s) 242
PctI GAATGC 2 cut(s) 698, 1411
PflFI GACNNNGTC 1 cut(s) 1063
PflMI CCANNNNNTGG 2 cut(s) 1475, 1700
PfoI TCCNGGA 1 cut(s) 1438
PkrI GCNGC 7 cut(s) 172, 838, 904, 1435, 1459, 1549, 1588
PleI GAGTC 5 cut(s) 370, 518, 520, 1234, 1965
PpsI GAGTC 5 cut(s) 370, 518, 520, 1234, 1965
PshBI ATTAAT 2 cut(s) 105, 1347
Psp6I CCWGG 3 cut(s) 1067, 1438, 1699
PspEI GGTNACC 1 cut(s) 1578
PspFI CCCAGC 2 cut(s) 563, 660
PspGI CCWGG 3 cut(s) 1067, 1438, 1699
PspPI GGNCC 6 cut(s) 308, 392, 851, 1136, 1391, 2051
PsrI GAACNNNNNNTAC 4 cut(s) 177, 209, 1925, 1957
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 889, 1876, 1987
PsyI GACNNNGTC 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 1586
RsaI GTAC 4 cut(s) 195, 650, 1725, 2104
RsaNI GTAC 4 cut(s) 194, 649, 1724, 2103
RseI CAYNNNNRTG 2 cut(s) 144, 335
SalI GTCGAC 1 cut(s) 725
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 8 cut(s) 105, 692, 1013, 1347, 1503, 1872, 2046, 2146
SatI GCNGC 7 cut(s) 171, 837, 903, 1434, 1458, 1548, 1587
Sau3AI GATC 9 cut(s) 61, 339, 889, 988, 1714, 1840, 1876, 1925, 1987
Sau96I GGNCC 6 cut(s) 308, 392, 851, 1136, 1391, 2051
SchI GAGTC 5 cut(s) 371, 518, 521, 1235, 1965
ScrFI CCNGG 4 cut(s) 1069, 1440, 1701, 1789
SduI GDGCHC 4 cut(s) 469, 1374, 1693, 2123
SfaNI GCATC 3 cut(s) 560, 697, 1138
SinI GGWCC 3 cut(s) 392, 851, 1391
SmiMI CAYNNNNRTG 2 cut(s) 144, 335
SmlI CTYRAG 2 cut(s) 992, 1418
SmoI CTYRAG 2 cut(s) 992, 1418
SphI GCATGC 1 cut(s) 1527
SsiI CCGC 2 cut(s) 919, 1643
SspI AATATT 1 cut(s) 76
SspMI CTAG 6 cut(s) 203, 1454, 1638, 1686, 1800, 2015
StyD4I CCNGG 4 cut(s) 1067, 1438, 1699, 1787
StyI CCWWGG 3 cut(s) 160, 280, 884
TaiI ACGT 4 cut(s) 690, 984, 1263, 1557
TaqI TCGA 6 cut(s) 342, 487, 702, 726, 830, 1931
TatI WGTACW 3 cut(s) 193, 648, 1723
Tru1I TTAA 8 cut(s) 105, 692, 1013, 1347, 1503, 1872, 2046, 2146
Tru9I TTAA 8 cut(s) 105, 692, 1013, 1347, 1503, 1872, 2046, 2146
TscAI CASTG 5 cut(s) 551, 651, 742, 1324, 1768
TseFI GTSAC 5 cut(s) 868, 1478, 1578, 1912, 2038
TseI GCWGC 7 cut(s) 170, 836, 902, 1433, 1457, 1547, 1586
Tsp45I GTSAC 5 cut(s) 868, 1478, 1578, 1912, 2038
TspDTI ATGAA 6 cut(s) 56, 138, 693, 916, 1418, 1842
TspGWI ACGGA 1 cut(s) 2099
TspRI CASTG 5 cut(s) 551, 651, 742, 1324, 1768
Tth111I GACNNNGTC 1 cut(s) 1063
Van91I CCANNNNNTGG 2 cut(s) 1475, 1700
VpaK11BI GGWCC 3 cut(s) 392, 851, 1391
VspI ATTAAT 2 cut(s) 105, 1347
XapI RAATTY 6 cut(s) 351, 568, 969, 1001, 1652, 1883
XceI RCATGY 1 cut(s) 1527
XcmI CCANNNNNNNNNTGG 2 cut(s) 405, 940
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 6 cut(s) 203, 1454, 1638, 1686, 1800, 2015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.