Rmu_sc0006696.1_g000002

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006696.1
OG0000390
Physical Location & Seq
Reverse (-)
2296 .. 5639
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006696.1_g000002.1.cds

Sequence Viewer

Length: 1113 bp
atgatcggttgtccaaaatgcttgaaccgctcactttggttctgttccacaaatagcttaaaagatgattcgatcagaggtaaaattgtgctttgcgatagaggccccgatgttagtggggatgggaatggggccatagagggtgatgcaaccggagttattctgacgggcgtaaaaattgctgaggagctggttagcccattacccctgcctgcatctcacgtcggattggaagaaaacaacaaaatttacaaatacataagcaaaacaaggaacccaattgcaactattttcaaaagtgaagagattaatgatgtattggctccatacgtgccctcctactcgtcaaggggtccaaatccaatgaatcctaacattctcaagccagatttagcagctccaggtactcacattctagcagcatatgatcaccaactatcagttggtgatagcagaactgaatataatttggattgtgggacatcaatggcgtgccctcatgctgcaggcgcagctgcatacgtcaaatcatttcactctaaatggtcaccggctgctattcaatcggctctcatcactacagctaaacctatgagtaccaaaactagcccgcacgctgaattcgcatatggagctggcctactaaacccttctagggctccatatcctggtttggtatacgatcttgatgaacaagactacttatattttttgtgttcacaaggatacagtggtaaactattggaaatcataaccggggacaagagtagctgctcatcaaaatctaataatcaaacagccaatgacctgaactatccttcttttgctctttcaatcaaggatccagaattcatcaatgggatcttccataggactgtcactaatgttggatcgtcaaattccacatacagagctaaagtggtggctccatcaagactcgaaatcaatgtgaatccaaatgtgctatcattcacatctctcggccagaagaaaccttttgtcgttacagtaaaagggtcatttgagaaatcaaatatagtttctgcatctttggtgtgggataatggtgatttccaagtcaagagcccgattgttgtctatgttacagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

370

Amino Acids

39.83

Weight (kDa)

7.02

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 668
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 678
AciI CCGC 2 cut(s) 28, 611
AclWI GGATC 4 cut(s) 836, 849, 869, 898
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 4 cut(s) 246, 620, 848, 898
AfaI GTAC 2 cut(s) 406, 598
AfiI CCNNNNNNNGG 2 cut(s) 655, 668
AgsI TTSAA 4 cut(s) 25, 295, 563, 834
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 2 cut(s) 400, 667
AluBI AGCT 8 cut(s) 57, 190, 398, 515, 584, 635, 771, 914
AluI AGCT 8 cut(s) 57, 190, 398, 515, 584, 635, 771, 914
AlwI GGATC 4 cut(s) 836, 849, 869, 898
AoxI GGCC 4 cut(s) 103, 132, 637, 982
ApeKI GCWGC 7 cut(s) 395, 419, 503, 512, 515, 554, 771
ApoI RAATTY 4 cut(s) 246, 620, 848, 898
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 3 cut(s) 104, 132, 353
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 5 cut(s) 155, 422, 458, 540, 1079
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 2 cut(s) 336, 497
BaeI ACNNNNGTAYC 2 cut(s) 718, 751
BamHI GGATCC 1 cut(s) 841
BanII GRGCYC 2 cut(s) 661, 1088
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 7 cut(s) 407, 431, 490, 502, 524, 541, 758
BccI CCATC 2 cut(s) 116, 937
BciT130I CCWGG 2 cut(s) 402, 669
BciVI GTATCC 1 cut(s) 719
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 757
BfaI CTAG 3 cut(s) 416, 606, 654
BfmI CTRYAG 2 cut(s) 504, 579
BfuI GTATCC 1 cut(s) 719
BisI GCNGC 7 cut(s) 396, 420, 504, 513, 516, 555, 772
BlsI GCNGC 7 cut(s) 397, 421, 505, 514, 517, 556, 773
Bme1390I CCNGG 3 cut(s) 402, 669, 757
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 3 cut(s) 104, 132, 353
BmiI GGNNCC 8 cut(s) 106, 133, 275, 324, 354, 660, 843, 927
BmrFI CCNGG 3 cut(s) 402, 669, 757
BmsI GCATC 3 cut(s) 136, 224, 1055
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 757
BsaAI YACGTR 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 756
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 668
Bse118I RCCGGY 1 cut(s) 550
BseBI CCWGG 2 cut(s) 402, 669
BseDI CCNNGG 1 cut(s) 756
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 655, 668
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 2 cut(s) 336, 497
BseXI GCAGC 7 cut(s) 407, 431, 490, 502, 524, 541, 758
BshFI GGCC 4 cut(s) 105, 134, 639, 984
BsiSI CCGG 3 cut(s) 153, 551, 756
BslFI GGGAC 2 cut(s) 493, 773
BslI CCNNNNNNNGG 2 cut(s) 655, 668
BsmFI GGGAC 2 cut(s) 493, 773
BsnI GGCC 4 cut(s) 105, 134, 639, 984
Bsp1286I GDGCHC 4 cut(s) 336, 497, 661, 1088
Bsp143I GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
BspACI CCGC 2 cut(s) 28, 611
BspANI GGCC 4 cut(s) 105, 134, 639, 984
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 8 cut(s) 106, 133, 275, 324, 354, 660, 843, 927
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 4 cut(s) 836, 849, 869, 898
BsrBI CCGCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 756
BssMI GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
BssNAI GTATAC 1 cut(s) 679
Bst1107I GTATAC 1 cut(s) 679
Bst2UI CCWGG 2 cut(s) 402, 669
Bst4CI ACNGT 4 cut(s) 731, 877, 1009, 1108
Bst6I CTCTTC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 6 cut(s) 213, 493, 508, 611, 615, 637
BstDEI CTNAG 1 cut(s) 183
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 7 cut(s) 6, 75, 430, 685, 844, 864, 893
BstMBI GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
BstMWI GCNNNNNNNGC 6 cut(s) 27, 102, 509, 512, 623, 632
BstNI CCWGG 2 cut(s) 402, 669
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 3 cut(s) 400, 667, 755
BstSFI CTRYAG 2 cut(s) 504, 579
BstSLI GKGCMC 2 cut(s) 336, 497
BstV1I GCAGC 7 cut(s) 407, 431, 490, 502, 524, 541, 758
BstX2I RGATCY 2 cut(s) 841, 861
BstYI RGATCY 2 cut(s) 841, 861
BstZ17I GTATAC 1 cut(s) 679
BsuI GTATCC 1 cut(s) 719
BsuRI GGCC 4 cut(s) 105, 134, 639, 984
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 736
Cac8I GCNNGC 6 cut(s) 213, 493, 508, 611, 615, 637
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 3 cut(s) 104, 132, 353
Csp6I GTAC 2 cut(s) 405, 597
CviAII CATG 1 cut(s) 500
CviQI GTAC 2 cut(s) 405, 597
DdeI CTNAG 1 cut(s) 183
DpnI GATC 7 cut(s) 5, 74, 429, 684, 843, 863, 892
DpnII GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 661, 1088
Eco47I GGWCC 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 546
EcoRI GAATTC 2 cut(s) 620, 848
EcoRII CCWGG 2 cut(s) 400, 667
EcoT38I GRGCYC 2 cut(s) 661, 1088
FaeI CATG 1 cut(s) 503
FaqI GGGAC 2 cut(s) 493, 773
FatI CATG 1 cut(s) 499
FauI CCCGC 1 cut(s) 618
FauNDI CATATG 2 cut(s) 424, 628
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 7 cut(s) 396, 420, 504, 513, 516, 555, 772
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 661, 1088
Fsp4HI GCNGC 7 cut(s) 396, 420, 504, 513, 516, 555, 772
FspBI CTAG 3 cut(s) 416, 606, 654
GlaI GCGC 1 cut(s) 511
GluI GCNGC 7 cut(s) 396, 420, 504, 513, 516, 555, 772
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 4 cut(s) 105, 134, 639, 984
HapII CCGG 3 cut(s) 153, 551, 756
HhaI GCGC 1 cut(s) 512
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 4 cut(s) 68, 367, 936, 952
HpaII CCGG 3 cut(s) 153, 551, 756
HphI GGTGA 5 cut(s) 155, 422, 458, 540, 1079
Hpy166II GTNNAC 3 cut(s) 679, 719, 737
Hpy188I TCNGA 3 cut(s) 77, 165, 227
Hpy188III TCNNGA 4 cut(s) 686, 845, 933, 1081
Hpy8I GTNNAC 3 cut(s) 679, 719, 737
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 660, 828
HpyCH4III ACNGT 4 cut(s) 731, 877, 1009, 1108
HpyCH4IV ACGT 3 cut(s) 222, 330, 522
HpyCH4V TGCA 6 cut(s) 149, 215, 284, 506, 518, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 102, 509, 512, 623, 632
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 3 cut(s) 222, 330, 522
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
LmnI GCTCC 6 cut(s) 187, 328, 403, 632, 664, 931
Lsp1109I GCAGC 7 cut(s) 407, 431, 490, 502, 524, 541, 758
LweI GCATC 3 cut(s) 136, 224, 1055
MaeI CTAG 3 cut(s) 416, 606, 654
MaeII ACGT 3 cut(s) 222, 330, 522
MaeIII GTNAC 4 cut(s) 546, 877, 1003, 1102
MalI GATC 7 cut(s) 5, 74, 429, 684, 843, 863, 892
MbiI CCGCTC 1 cut(s) 30
MboI GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
MboII GAAGA 4 cut(s) 245, 314, 856, 1000
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 841, 861
MhlI GDGCHC 4 cut(s) 336, 497, 661, 1088
MluCI AATT 8 cut(s) 84, 177, 246, 279, 466, 620, 848, 898
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 2 cut(s) 205, 868
MnlI CCTC 6 cut(s) 71, 95, 133, 178, 346, 507
MseI TTAA 3 cut(s) 59, 309, 1111
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 3 cut(s) 153, 551, 756
MspR9I CCNGG 3 cut(s) 402, 669, 757
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 2 cut(s) 402, 669
MwoI GCNNNNNNNGC 6 cut(s) 27, 102, 509, 512, 623, 632
NciI CCSGG 1 cut(s) 757
NdeI CATATG 2 cut(s) 424, 628
NdeII GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 8 cut(s) 106, 133, 275, 324, 354, 660, 843, 927
NmeAIII GCCGAG 1 cut(s) 960
NmuCI GTSAC 2 cut(s) 546, 877
PfeI GAWTC 3 cut(s) 68, 367, 952
PflMI CCANNNNNTGG 1 cut(s) 668
PkrI GCNGC 7 cut(s) 397, 421, 505, 514, 517, 556, 773
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
Ppu21I YACGTR 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 400, 667
PspEI GGTNACC 1 cut(s) 546
PspGI CCWGG 2 cut(s) 400, 667
PspN4I GGNNCC 8 cut(s) 106, 133, 275, 324, 354, 660, 843, 927
PspPI GGNCC 3 cut(s) 104, 132, 353
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 2 cut(s) 841, 861
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 406, 598
RsaNI GTAC 2 cut(s) 405, 597
SaqAI TTAA 3 cut(s) 59, 309, 1111
SatI GCNGC 7 cut(s) 396, 420, 504, 513, 516, 555, 772
Sau3AI GATC 7 cut(s) 3, 72, 427, 682, 841, 861, 890
Sau96I GGNCC 3 cut(s) 104, 132, 353
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 3 cut(s) 402, 669, 757
SduI GDGCHC 4 cut(s) 336, 497, 661, 1088
SfaNI GCATC 3 cut(s) 136, 224, 1055
SfcI CTRYAG 2 cut(s) 504, 579
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 8 cut(s) 84, 177, 246, 279, 466, 620, 848, 898
SsiI CCGC 2 cut(s) 28, 611
SspMI CTAG 3 cut(s) 416, 606, 654
StyD4I CCNGG 3 cut(s) 400, 667, 755
TaaI ACNGT 4 cut(s) 731, 877, 1009, 1108
TaiI ACGT 3 cut(s) 225, 333, 525
TaqI TCGA 2 cut(s) 71, 939
TasI AATT 8 cut(s) 84, 177, 246, 279, 466, 620, 848, 898
TfiI GAWTC 3 cut(s) 68, 367, 952
Tru1I TTAA 3 cut(s) 59, 309, 1111
Tru9I TTAA 3 cut(s) 59, 309, 1111
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 2 cut(s) 546, 877
TseI GCWGC 7 cut(s) 395, 419, 503, 512, 515, 554, 771
Tsp45I GTSAC 2 cut(s) 546, 877
TspDTI ATGAA 3 cut(s) 380, 705, 841
TspRI CASTG 1 cut(s) 736
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 4 cut(s) 246, 620, 848, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 3 cut(s) 416, 606, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.