Rmu_co8479243.1_g000001

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8479243.1
OG0000390
Physical Location & Seq
Forward (+)
1 .. 1905
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8479243.1_g000001.1.cds

Sequence Viewer

Length: 1036 bp
cctcaatgccaatattctacttctcattgatgctactcaatcagttgctcgggatgcccgaaaggcttatattgtgtatatgggcgacaagccaaagaacggggtgccagtaacacctgatcttcatgtgaatattctacgagatgtggttgacaacaacattaataatgatatttcacatgaagctttgcttcttcacagctatgggagaagtttccatggatttgctgcaatgctcacagaacaagaagtacaaaaactagctggaatggatggtgtagtgtctatcttcccaagcaaaaagaagagctacaaaacaacaaagtcatgggacttccttgggtttccacaaacggtggagataggccctcttgaaagggaaatcatcattggtgtgatcgatagtggaatttggccagagtcggacagctttagtgatgttggttttggtcctccacctaaaaaatggaaaggcgtgtgtcaaggcaatgagaactttacttgtaacaacaaaatcatcggagcacggtattaccatcatcctcgacccttcaaagaaggagacattgagtctccaagagactcaattggtcatggaacccactgcgcatcaacagtagctgggaatttagtgagaaatgcgagccaaaatggtttagggttgggaacagcaagaggaggagtgccatcagcacatattgcagtgtacaaagtatgctgggaggatgcatgtgatgaagctgacgttttaagggcattcgatgatgccattgctgatggtgtcgacattatcagtgcttccatcggaggtgaagttccaaatgattttttgcatgacgcacatataattgggtcatttcacgccataaaaaaggggatattgtgttcgatggctgctggtaacgaaggtccaaaaaaaaaaactgtgacaaactttgtcccatgggatctttctgtggctgctaccaccataaaccgccagttcatcaccaagcttcaattgggtaatggtaaaatctatgaggtaattaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

344

Amino Acids

37.34

Weight (kDa)

6.18

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 784
AciI CCGC 1 cut(s) 977
AclWI GGATC 1 cut(s) 955
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 2 cut(s) 409, 626
AfaI GTAC 2 cut(s) 253, 708
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 3 cut(s) 375, 554, 999
AhdI GACNNNNNGTC 1 cut(s) 569
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AloI GAACNNNNNNTCC 4 cut(s) 799, 831, 869, 901
AluBI AGCT 8 cut(s) 186, 202, 264, 310, 430, 621, 741, 995
AluI AGCT 8 cut(s) 186, 202, 264, 310, 430, 621, 741, 995
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 3 cut(s) 556, 574, 577
AlwI GGATC 1 cut(s) 955
AlwNI CAGNNNCTG 1 cut(s) 621
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 2 cut(s) 365, 414
ApeKI GCWGC 3 cut(s) 228, 894, 960
ApoI RAATTY 2 cut(s) 409, 626
AseI ATTAAT 2 cut(s) 163, 1030
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 3 cut(s) 366, 450, 909
AsuHPI GGTGA 2 cut(s) 822, 980
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 2 cut(s) 450, 909
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 3 cut(s) 215, 881, 947
BccI CCATC 6 cut(s) 267, 544, 695, 771, 810, 884
BcoDI GTCTC 3 cut(s) 556, 574, 577
BfaI CTAG 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 63
BisI GCNGC 3 cut(s) 229, 895, 961
BlsI GCNGC 3 cut(s) 230, 896, 962
Bme18I GGWCC 2 cut(s) 450, 909
BmeRI GACNNNNNGTC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 366, 450, 909
BmiI GGNNCC 2 cut(s) 106, 599
BmsI GCATC 5 cut(s) 20, 44, 618, 716, 755
Bsa29I ATCGAT 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 218, 338, 942
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 108, 980
Bse3DI GCAATG 3 cut(s) 238, 494, 769
BseCI ATCGAT 1 cut(s) 400
BseDI CCNNGG 3 cut(s) 218, 338, 942
BseGI GGATG 4 cut(s) 59, 278, 539, 731
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 3 cut(s) 238, 494, 769
BseNI ACTGG 2 cut(s) 108, 980
BseRI GAGGAG 2 cut(s) 691, 694
BseXI GCAGC 3 cut(s) 215, 881, 947
BseYI CCCAGC 2 cut(s) 621, 718
BshFI GGCC 2 cut(s) 367, 416
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 527
BsiHKCI CYCGRG 1 cut(s) 49
BslFI GGGAC 2 cut(s) 345, 924
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 3 cut(s) 556, 574, 577
BsmFI GGGAC 2 cut(s) 345, 924
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 2 cut(s) 367, 416
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 527
Bsp1407I TGTACA 1 cut(s) 706
Bsp143I GATC 3 cut(s) 119, 397, 947
Bsp19I CCATGG 2 cut(s) 218, 942
BspACI CCGC 1 cut(s) 977
BspANI GGCC 2 cut(s) 367, 416
BspDI ATCGAT 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 106, 599
BspPI GGATC 1 cut(s) 955
BspQI GCTCTTC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 3 cut(s) 238, 494, 769
BsrGI TGTACA 1 cut(s) 706
BsrI ACTGG 2 cut(s) 108, 980
BssECI CCNNGG 3 cut(s) 218, 338, 942
BssMI GATC 3 cut(s) 119, 397, 947
BssT1I CCWWGG 3 cut(s) 218, 338, 942
Bst4CI ACNGT 4 cut(s) 356, 529, 617, 926
Bst6I CTCTTC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 699
BstAUI TGTACA 1 cut(s) 706
BstC8I GCNNGC 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 218, 942
BstF5I GGATG 4 cut(s) 59, 278, 539, 731
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 3 cut(s) 122, 400, 950
BstMAI GTCTC 3 cut(s) 556, 574, 577
BstMBI GATC 3 cut(s) 119, 397, 947
BstMWI GCNNNNNNNGC 3 cut(s) 54, 63, 699
BstNSI RCATGY 1 cut(s) 733
BstV1I GCAGC 3 cut(s) 215, 881, 947
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
Bsu15I ATCGAT 1 cut(s) 400
BsuRI GGCC 2 cut(s) 367, 416
BsuTUI ATCGAT 1 cut(s) 400
BtgI CCRYGG 2 cut(s) 218, 942
BtsCI GGATG 4 cut(s) 59, 278, 539, 731
BtsI GCAGTG 2 cut(s) 602, 709
BtsIMutI CAGTG 3 cut(s) 602, 709, 800
Cac8I GCNNGC 1 cut(s) 644
CaiI CAGNNNCTG 1 cut(s) 621
CfoI GCGC 1 cut(s) 609
Cfr13I GGNCC 3 cut(s) 366, 450, 909
ClaI ATCGAT 1 cut(s) 400
CseI GACGC 1 cut(s) 846
Csp6I GTAC 2 cut(s) 252, 707
CviAII CATG 8 cut(s) 126, 180, 219, 328, 594, 730, 834, 943
CviQI GTAC 2 cut(s) 252, 707
DpnI GATC 3 cut(s) 121, 399, 949
DpnII GATC 3 cut(s) 119, 397, 947
DriI GACNNNNNGTC 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 300
Eam1105I GACNNNNNGTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 3 cut(s) 218, 338, 942
Eco47I GGWCC 2 cut(s) 450, 909
Eco88I CYCGRG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 366
EcoT14I CCWWGG 3 cut(s) 218, 338, 942
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 3 cut(s) 218, 338, 942
FaeI CATG 8 cut(s) 129, 183, 222, 331, 597, 733, 837, 946
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FaqI GGGAC 2 cut(s) 345, 924
FatI CATG 8 cut(s) 125, 179, 218, 327, 593, 729, 833, 942
FblI GTMKAC 1 cut(s) 784
Fnu4HI GCNGC 3 cut(s) 229, 895, 961
FokI GGATG 4 cut(s) 66, 285, 526, 738
Fsp4HI GCNGC 3 cut(s) 229, 895, 961
FspBI CTAG 1 cut(s) 261
FspI TGCGCA 1 cut(s) 608
GlaI GCGC 1 cut(s) 608
GluI GCNGC 3 cut(s) 229, 895, 961
GsaI CCCAGC 2 cut(s) 625, 722
HaeIII GGCC 2 cut(s) 367, 416
HgaI GACGC 1 cut(s) 846
HhaI GCGC 1 cut(s) 609
Hin1II CATG 8 cut(s) 129, 183, 222, 331, 597, 733, 837, 946
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 2 cut(s) 152, 785
HindII GTYRAC 2 cut(s) 152, 785
HindIII AAGCTT 2 cut(s) 184, 993
HinfI GANTC 3 cut(s) 420, 570, 582
HphI GGTGA 2 cut(s) 822, 980
Hpy166II GTNNAC 3 cut(s) 152, 707, 785
Hpy188I TCNGA 3 cut(s) 425, 522, 807
Hpy188III TCNNGA 2 cut(s) 51, 372
Hpy8I GTNNAC 3 cut(s) 152, 707, 785
HpyAV CCTTC 3 cut(s) 552, 560, 900
HpyCH4III ACNGT 4 cut(s) 356, 529, 617, 926
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 4 cut(s) 231, 702, 729, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 63, 699
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 8 cut(s) 129, 183, 222, 331, 597, 733, 837, 946
HspAI GCGC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 119, 397, 947
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 522
LpnPI CCDG 8 cut(s) 121, 130, 250, 430, 607, 704, 883, 993
Lsp1109I GCAGC 3 cut(s) 215, 881, 947
LweI GCATC 5 cut(s) 20, 44, 618, 716, 755
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 4 cut(s) 110, 504, 900, 926
MalI GATC 3 cut(s) 121, 399, 949
MboI GATC 3 cut(s) 119, 397, 947
MboII GAAGA 4 cut(s) 114, 186, 281, 317
MfeI CAATTG 2 cut(s) 586, 999
MflI RGATCY 1 cut(s) 947
MhlI GDGCHC 1 cut(s) 527
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 7 cut(s) 409, 586, 626, 847, 999, 1027, 1031
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 3 cut(s) 429, 576, 579
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 9 cut(s) 12, 379, 463, 553, 669, 672, 716, 801, 1016
Mox20I TGGCCA 1 cut(s) 416
Mph1103I ATGCAT 1 cut(s) 731
MscI TGGCCA 1 cut(s) 416
MseI TTAA 4 cut(s) 163, 750, 1030, 1034
MslI CAYNNNNRTG 2 cut(s) 202, 393
Msp20I TGGCCA 1 cut(s) 416
MunI CAATTG 2 cut(s) 586, 999
Mva1269I GAATGC 1 cut(s) 756
MwoI GCNNNNNNNGC 3 cut(s) 54, 63, 699
NcoI CCATGG 2 cut(s) 218, 942
NdeII GATC 3 cut(s) 119, 397, 947
NlaIII CATG 8 cut(s) 129, 183, 222, 331, 597, 733, 837, 946
NlaIV GGNNCC 2 cut(s) 106, 599
NmuCI GTSAC 1 cut(s) 926
NsbI TGCGCA 1 cut(s) 608
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 1 cut(s) 733
PacI TTAATTAA 1 cut(s) 1034
PciSI GCTCTTC 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 756
PkrI GCNGC 3 cut(s) 230, 896, 962
PleI GAGTC 3 cut(s) 428, 576, 578
PpsI GAGTC 3 cut(s) 428, 576, 578
PshBI ATTAAT 2 cut(s) 163, 1030
PspFI CCCAGC 2 cut(s) 621, 718
PspN4I GGNNCC 2 cut(s) 106, 599
PspPI GGNCC 3 cut(s) 366, 450, 909
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
PstNI CAGNNNCTG 1 cut(s) 621
PsuI RGATCY 1 cut(s) 947
RsaI GTAC 2 cut(s) 253, 708
RsaNI GTAC 2 cut(s) 252, 707
RseI CAYNNNNRTG 2 cut(s) 202, 393
SalI GTCGAC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 163, 750, 1030, 1034
SatI GCNGC 3 cut(s) 229, 895, 961
Sau3AI GATC 3 cut(s) 119, 397, 947
Sau96I GGNCC 3 cut(s) 366, 450, 909
SchI GAGTC 3 cut(s) 429, 576, 579
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 5 cut(s) 20, 44, 618, 716, 755
SinI GGWCC 2 cut(s) 450, 909
SmiMI CAYNNNNRTG 2 cut(s) 202, 393
Sse9I AATT 7 cut(s) 409, 586, 626, 847, 999, 1027, 1031
SsiI CCGC 1 cut(s) 977
SspI AATATT 2 cut(s) 14, 134
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 3 cut(s) 218, 338, 942
TaaI ACNGT 4 cut(s) 356, 529, 617, 926
TaiI ACGT 1 cut(s) 748
TaqI TCGA 5 cut(s) 400, 545, 760, 784, 888
TasI AATT 7 cut(s) 409, 586, 626, 847, 999, 1027, 1031
TatI WGTACW 2 cut(s) 251, 706
Tru1I TTAA 4 cut(s) 163, 750, 1030, 1034
Tru9I TTAA 4 cut(s) 163, 750, 1030, 1034
TscAI CASTG 3 cut(s) 609, 709, 800
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 3 cut(s) 228, 894, 960
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 4 cut(s) 114, 196, 751, 974
TspRI CASTG 3 cut(s) 609, 709, 800
VpaK11BI GGWCC 2 cut(s) 450, 909
VspI ATTAAT 2 cut(s) 163, 1030
XapI RAATTY 2 cut(s) 409, 626
XceI RCATGY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 2 cut(s) 463, 998
XmiI GTMKAC 1 cut(s) 784
XspI CTAG 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.