Rmu_sc0000019.1_g000019

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000019.1
OG0000390
Physical Location & Seq
Reverse (-)
95285 .. 98216
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000019.1_g000019.1.cds

Sequence Viewer

Length: 1182 bp
atgattgatatgagcttgttctatccctacagagagatgatggattcaaacccatcacacaccaggaacgccgccaacattggtctgcgtccactatccccatcccaaaacaacatgtgttttggaaggttctgttccacaaatagcttaaaagatgattcgattagaggtaaaattgtgctttgcgatagaggccccgatgttagtggggatgggaatggggccatagagggtgatgcaaccggagttattctgacgggcgtaaaagttgccgaggagctggttggcccattacccctacctgcatctcacgtcggattggaagaaaacaacaaaatttacaaatacataagcgaaacaaggaacccaattgcaactattttcaaaagtgaagagattaatgatgtattggctccatacgtgccctcctactcgtcaaggggtccaaatccaatgaatcctaacattctcaagccagatttagcagctccaggtactcacattctagcagcatatgatagcagaactgaatataatttggatagtgggacatcaatggcgtgccctcatgctgcaggcgcagctgcatacgtcaaatcatttcactctaaatggtcaccagctgctattcaatcggctctcatcactacagctaaacctatgagtaccaaaactagcccgcacgctgaattcgcatatggagctggcctactaaacccttctagggctccatatcctggtttggtatacgatcttgatgaacaagactacttatattttttgtgttcacaaggatacagtggtaaactattggaaatcataaccggggacaagagtagctgctcatcaaaatctaataatcaaacagccaatgacctgaactatccttcttttgctctttcaatcaaggatccagaattcatcaatgggatcttccataggactgtcactaatgttggatcgtcaaattccacatatagagctaaagtggtggctccatcaggactcgaaatcaatgtgaatccaaatgtgctatcattcacatctctccgccagaagaaaccttttgtcgttacagtaaaagggtcatttgagaaatcaaatatagtttctgcatctttggtgtgggataatggtgatttccaagtcaggagcccgattgttgtctatgttacagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

393

Amino Acids

42.5

Weight (kDa)

6.39

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 737
AccI GTMKAC 1 cut(s) 747
AciI CCGC 3 cut(s) 72, 680, 1051
AclWI GGATC 4 cut(s) 905, 918, 938, 967
AcsI RAATTY 4 cut(s) 336, 689, 917, 967
AfaI GTAC 2 cut(s) 496, 667
AfiI CCNNNNNNNGG 2 cut(s) 724, 737
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 4 cut(s) 48, 385, 632, 903
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 3 cut(s) 62, 490, 736
AlwI GGATC 4 cut(s) 905, 918, 938, 967
AoxI GGCC 4 cut(s) 193, 222, 286, 706
ApeKI GCWGC 7 cut(s) 485, 509, 572, 581, 584, 623, 840
ApoI RAATTY 4 cut(s) 336, 689, 917, 967
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 4 cut(s) 194, 222, 287, 443
AsuC2I CCSGG 1 cut(s) 826
AsuHPI GGTGA 3 cut(s) 245, 609, 1148
AvaII GGWCC 1 cut(s) 443
BaeGI GKGCMC 2 cut(s) 426, 566
BaeI ACNNNNGTAYC 2 cut(s) 787, 820
BamHI GGATCC 1 cut(s) 910
BanII GRGCYC 2 cut(s) 730, 1157
BbvI GCAGC 7 cut(s) 497, 521, 559, 571, 593, 610, 827
BccI CCATC 5 cut(s) 34, 61, 109, 206, 1006
BciT130I CCWGG 3 cut(s) 64, 492, 738
BciVI GTATCC 1 cut(s) 788
BcnI CCSGG 1 cut(s) 826
BfaI CTAG 3 cut(s) 506, 675, 723
BfmI CTRYAG 3 cut(s) 28, 573, 648
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 788
BisI GCNGC 8 cut(s) 72, 486, 510, 573, 582, 585, 624, 841
BlsI GCNGC 8 cut(s) 73, 487, 511, 574, 583, 586, 625, 842
Bme1390I CCNGG 4 cut(s) 64, 492, 738, 826
Bme18I GGWCC 1 cut(s) 443
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 4 cut(s) 194, 222, 287, 443
BmiI GGNNCC 9 cut(s) 196, 223, 365, 414, 444, 729, 912, 996, 1154
BmrFI CCNGG 4 cut(s) 64, 492, 738, 826
BmsI GCATC 3 cut(s) 226, 314, 1124
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 826
BsaAI YACGTR 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 273, 825
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 724, 737
BseBI CCWGG 3 cut(s) 64, 492, 738
BseDI CCNNGG 2 cut(s) 273, 825
BseGI GGATG 2 cut(s) 101, 217
BseLI CCNNNNNNNGG 2 cut(s) 724, 737
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 426, 566
BseXI GCAGC 7 cut(s) 497, 521, 559, 571, 593, 610, 827
BshFI GGCC 4 cut(s) 195, 224, 288, 708
BsiSI CCGG 2 cut(s) 243, 825
BslFI GGGAC 2 cut(s) 562, 842
BslI CCNNNNNNNGG 2 cut(s) 724, 737
BsmFI GGGAC 2 cut(s) 562, 842
BsnI GGCC 4 cut(s) 195, 224, 288, 708
Bsp1286I GDGCHC 4 cut(s) 426, 566, 730, 1157
Bsp143I GATC 4 cut(s) 751, 910, 930, 959
BspACI CCGC 3 cut(s) 72, 680, 1051
BspANI GGCC 4 cut(s) 195, 224, 288, 708
BspLI GGNNCC 9 cut(s) 196, 223, 365, 414, 444, 729, 912, 996, 1154
BspMAI CTGCAG 1 cut(s) 577
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 4 cut(s) 905, 918, 938, 967
BssECI CCNNGG 2 cut(s) 273, 825
BssMI GATC 4 cut(s) 751, 910, 930, 959
BssNAI GTATAC 1 cut(s) 748
Bst1107I GTATAC 1 cut(s) 748
Bst2UI CCWGG 3 cut(s) 64, 492, 738
Bst4CI ACNGT 4 cut(s) 800, 946, 1078, 1177
Bst6I CTCTTC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 421
BstC8I GCNNGC 5 cut(s) 562, 577, 680, 684, 706
BstEII GGTNACC 1 cut(s) 615
BstF5I GGATG 2 cut(s) 101, 217
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 4 cut(s) 754, 913, 933, 962
BstMBI GATC 4 cut(s) 751, 910, 930, 959
BstMWI GCNNNNNNNGC 5 cut(s) 192, 578, 581, 692, 701
BstNI CCWGG 3 cut(s) 64, 492, 738
BstNSI RCATGY 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 615
BstSCI CCNGG 4 cut(s) 62, 490, 736, 824
BstSFI CTRYAG 3 cut(s) 28, 573, 648
BstSLI GKGCMC 2 cut(s) 426, 566
BstV1I GCAGC 7 cut(s) 497, 521, 559, 571, 593, 610, 827
BstX2I RGATCY 2 cut(s) 910, 930
BstYI RGATCY 2 cut(s) 910, 930
BstZ17I GTATAC 1 cut(s) 748
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 4 cut(s) 195, 224, 288, 708
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 101, 217
BtsIMutI CAGTG 1 cut(s) 805
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 5 cut(s) 562, 577, 680, 684, 706
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 4 cut(s) 194, 222, 287, 443
CseI GACGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 495, 666
CviAII CATG 2 cut(s) 115, 569
CviQI GTAC 2 cut(s) 495, 666
DpnI GATC 4 cut(s) 753, 912, 932, 961
DpnII GATC 4 cut(s) 751, 910, 930, 959
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 1040
Eco24I GRGCYC 2 cut(s) 730, 1157
Eco47I GGWCC 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 615
EcoRI GAATTC 2 cut(s) 689, 917
EcoRII CCWGG 3 cut(s) 62, 490, 736
EcoT38I GRGCYC 2 cut(s) 730, 1157
FaeI CATG 2 cut(s) 118, 572
FaqI GGGAC 2 cut(s) 562, 842
FatI CATG 2 cut(s) 114, 568
FauI CCCGC 1 cut(s) 687
FauNDI CATATG 2 cut(s) 514, 697
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 8 cut(s) 72, 486, 510, 573, 582, 585, 624, 841
FokI GGATG 2 cut(s) 88, 224
FriOI GRGCYC 2 cut(s) 730, 1157
Fsp4HI GCNGC 8 cut(s) 72, 486, 510, 573, 582, 585, 624, 841
FspBI CTAG 3 cut(s) 506, 675, 723
GlaI GCGC 1 cut(s) 580
GluI GCNGC 8 cut(s) 72, 486, 510, 573, 582, 585, 624, 841
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 4 cut(s) 195, 224, 288, 708
HapII CCGG 2 cut(s) 243, 825
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 581
Hin1II CATG 2 cut(s) 118, 572
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HinfI GANTC 5 cut(s) 44, 158, 457, 1005, 1021
HpaII CCGG 2 cut(s) 243, 825
HphI GGTGA 3 cut(s) 245, 609, 1148
Hpy166II GTNNAC 4 cut(s) 92, 748, 788, 806
Hpy188I TCNGA 2 cut(s) 255, 317
Hpy188III TCNNGA 4 cut(s) 755, 914, 1002, 1150
Hpy8I GTNNAC 4 cut(s) 92, 748, 788, 806
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 120, 729, 897
HpyCH4III ACNGT 4 cut(s) 800, 946, 1078, 1177
HpyCH4IV ACGT 3 cut(s) 312, 420, 591
HpyCH4V TGCA 6 cut(s) 239, 305, 374, 575, 587, 1115
HpyF10VI GCNNNNNNNGC 5 cut(s) 192, 578, 581, 692, 701
HpySE526I ACGT 3 cut(s) 312, 420, 591
Hsp92II CATG 2 cut(s) 118, 572
HspAI GCGC 1 cut(s) 579
Kzo9I GATC 4 cut(s) 751, 910, 930, 959
LmnI GCTCC 7 cut(s) 277, 418, 493, 701, 733, 1000, 1152
Lsp1109I GCAGC 7 cut(s) 497, 521, 559, 571, 593, 610, 827
LweI GCATC 3 cut(s) 226, 314, 1124
MaeI CTAG 3 cut(s) 506, 675, 723
MaeII ACGT 3 cut(s) 312, 420, 591
MaeIII GTNAC 4 cut(s) 615, 946, 1072, 1171
MalI GATC 4 cut(s) 753, 912, 932, 961
MboI GATC 4 cut(s) 751, 910, 930, 959
MboII GAAGA 4 cut(s) 335, 404, 925, 1069
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 910, 930
MhlI GDGCHC 4 cut(s) 426, 566, 730, 1157
MluCI AATT 7 cut(s) 174, 336, 369, 535, 689, 917, 967
MlyI GAGTC 1 cut(s) 999
MmeI TCCRAC 2 cut(s) 295, 937
MnlI CCTC 6 cut(s) 161, 185, 223, 268, 436, 576
MseI TTAA 3 cut(s) 149, 399, 1180
MspA1I CMGCKG 2 cut(s) 584, 623
MspI CCGG 2 cut(s) 243, 825
MspR9I CCNGG 4 cut(s) 64, 492, 738, 826
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 3 cut(s) 64, 492, 738
MwoI GCNNNNNNNGC 5 cut(s) 192, 578, 581, 692, 701
NciI CCSGG 1 cut(s) 826
NdeI CATATG 2 cut(s) 514, 697
NdeII GATC 4 cut(s) 751, 910, 930, 959
NlaIII CATG 2 cut(s) 118, 572
NlaIV GGNNCC 9 cut(s) 196, 223, 365, 414, 444, 729, 912, 996, 1154
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 615, 946
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PfeI GAWTC 4 cut(s) 44, 158, 457, 1021
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 8 cut(s) 73, 487, 511, 574, 583, 586, 625, 842
PleI GAGTC 1 cut(s) 999
PpsI GAGTC 1 cut(s) 999
Ppu21I YACGTR 1 cut(s) 421
PscI ACATGT 1 cut(s) 114
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 3 cut(s) 62, 490, 736
PspEI GGTNACC 1 cut(s) 615
PspGI CCWGG 3 cut(s) 62, 490, 736
PspN4I GGNNCC 9 cut(s) 196, 223, 365, 414, 444, 729, 912, 996, 1154
PspPI GGNCC 4 cut(s) 194, 222, 287, 443
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 910, 930
PvuII CAGCTG 2 cut(s) 584, 623
RsaI GTAC 2 cut(s) 496, 667
RsaNI GTAC 2 cut(s) 495, 666
SaqAI TTAA 3 cut(s) 149, 399, 1180
SatI GCNGC 8 cut(s) 72, 486, 510, 573, 582, 585, 624, 841
Sau3AI GATC 4 cut(s) 751, 910, 930, 959
Sau96I GGNCC 4 cut(s) 194, 222, 287, 443
SchI GAGTC 1 cut(s) 999
ScrFI CCNGG 4 cut(s) 64, 492, 738, 826
SduI GDGCHC 4 cut(s) 426, 566, 730, 1157
SfaNI GCATC 3 cut(s) 226, 314, 1124
SfcI CTRYAG 3 cut(s) 28, 573, 648
SinI GGWCC 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 7 cut(s) 174, 336, 369, 535, 689, 917, 967
SsiI CCGC 3 cut(s) 72, 680, 1051
SspMI CTAG 3 cut(s) 506, 675, 723
StyD4I CCNGG 4 cut(s) 62, 490, 736, 824
TaaI ACNGT 4 cut(s) 800, 946, 1078, 1177
TaiI ACGT 3 cut(s) 315, 423, 594
TaqI TCGA 2 cut(s) 161, 1008
TasI AATT 7 cut(s) 174, 336, 369, 535, 689, 917, 967
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 4 cut(s) 44, 158, 457, 1021
Tru1I TTAA 3 cut(s) 149, 399, 1180
Tru9I TTAA 3 cut(s) 149, 399, 1180
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 2 cut(s) 615, 946
TseI GCWGC 7 cut(s) 485, 509, 572, 581, 584, 623, 840
Tsp45I GTSAC 2 cut(s) 615, 946
TspDTI ATGAA 3 cut(s) 470, 774, 910
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 443
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 4 cut(s) 336, 689, 917, 967
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 747
XspI CTAG 3 cut(s) 506, 675, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.