Rmu_co8196240.1_g000001

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8196240.1
OG0000390
Physical Location & Seq
Forward (+)
73 .. 705
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8196240.1_g000001.1.cds

Sequence Viewer

Length: 533 bp
atggatggtgtagtgtctatcttcccaagcaaacaaaggagcgtgaaaacaacaaagtcatggaacttccttggttttccagaaacagttaagagaagcgcccttgaaagggatatcatcgtcggtgtgatggacagtggaatttggccagagtcggacagctttagtgatgctggctttggtcctccacctaagaaatggaaaggcaaatgtcaaggcaatggaaatcttacttgtaacaataaaatcattggagcacagtattaccgtgcttctcgatccttcgaagcagatgttgagtctccaagagactcaaatggtcatggaactcatactgcatcaacagcagctgggaacacagtgaccaaggcaagcctaaatggtttagggttgggaaaagcaagaggaggggtgccatcagcacgtattgctgtgtacaaagtatgctggagcagcacgcctgcttgtgaagatgctgacgttttagcggcattcgatgatgccattgctgacggtgtcgacattctctctat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

177

Amino Acids

18.7

Weight (kDa)

7.64

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 519
AciI CCGC 1 cut(s) 488
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 108, 109
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 2 cut(s) 162, 350
AluI AGCT 2 cut(s) 162, 350
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 303, 306
AlwI GGATC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 347, 453
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 148
BanI GGYRCC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 359, 465
BccI CCATC 2 cut(s) 124, 424
BcoDI GTCTC 2 cut(s) 303, 306
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 3 cut(s) 348, 454, 489
BlsI GCNGC 3 cut(s) 349, 455, 490
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 414
BmsI GCATC 4 cut(s) 160, 347, 463, 490
BpmI CTGGAG 1 cut(s) 469
Bpu14I TTCGAA 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 70, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 109
Bse3DI GCAATG 2 cut(s) 226, 504
BseDI CCNNGG 2 cut(s) 70, 366
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 108, 109
BseMI GCAATG 2 cut(s) 226, 504
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 359, 465
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 108, 109
BsmAI GTCTC 2 cut(s) 303, 306
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 2 cut(s) 226, 504
BsrGI TGTACA 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 70, 366
BssMI GATC 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 70, 366
Bst4CI ACNGT 6 cut(s) 88, 137, 261, 269, 361, 515
BstAPI GCANNNNNTGC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 4 cut(s) 175, 373, 458, 462
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 303, 306
BstMBI GATC 1 cut(s) 278
BstMWI GCNNNNNNNGC 3 cut(s) 344, 428, 453
BstV1I GCAGC 2 cut(s) 359, 465
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 142, 366
Cac8I GCNNGC 4 cut(s) 175, 373, 458, 462
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 60, 323
CviJI RGCY 5 cut(s) 148, 162, 177, 350, 375
CviKI_1 RGCY 5 cut(s) 148, 162, 177, 350, 375
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 70, 366
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 182
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 70, 366
ErhI CCWWGG 2 cut(s) 70, 366
FaeI CATG 2 cut(s) 63, 326
FaiI YATR 4 cut(s) 61, 324, 333, 445
FatI CATG 2 cut(s) 59, 322
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 348, 454, 489
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 348, 454, 489
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 348, 454, 489
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 148
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 63, 326
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 3 cut(s) 152, 299, 311
Hpy166II GTNNAC 2 cut(s) 436, 520
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 80, 276
Hpy8I GTNNAC 2 cut(s) 436, 520
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 6 cut(s) 88, 137, 261, 269, 361, 515
HpyCH4IV ACGT 2 cut(s) 424, 480
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 428, 453
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 424, 480
Hsp92II CATG 2 cut(s) 63, 326
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 3 cut(s) 39, 254, 450
LpnPI CCDG 6 cut(s) 93, 159, 162, 336, 433, 474
Lsp1109I GCAGC 2 cut(s) 359, 465
LweI GCATC 4 cut(s) 160, 347, 463, 490
MaeII ACGT 2 cut(s) 424, 480
MaeIII GTNAC 2 cut(s) 236, 361
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 2 cut(s) 13, 482
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 3 cut(s) 161, 305, 308
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 195, 398, 401
Mox20I TGGCCA 1 cut(s) 148
MscI TGGCCA 1 cut(s) 148
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 344, 428, 453
NdeII GATC 1 cut(s) 278
NlaIII CATG 2 cut(s) 63, 326
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 361
NspV TTCGAA 1 cut(s) 285
PctI GAATGC 1 cut(s) 491
PflFI GACNNNGTC 1 cut(s) 515
PkrI GCNGC 3 cut(s) 349, 455, 490
PleI GAGTC 3 cut(s) 160, 305, 307
PpsI GAGTC 3 cut(s) 160, 305, 307
Ppu21I YACGTR 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SalI GTCGAC 1 cut(s) 518
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 348, 454, 489
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 3 cut(s) 161, 305, 308
SduI GDGCHC 1 cut(s) 259
SetI ASST 5 cut(s) 164, 193, 352, 427, 483
SfaNI GCATC 4 cut(s) 160, 347, 463, 490
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 182
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 488
StyI CCWWGG 2 cut(s) 70, 366
TaaI ACNGT 6 cut(s) 88, 137, 261, 269, 361, 515
TaiI ACGT 2 cut(s) 427, 483
TaqI TCGA 4 cut(s) 277, 285, 495, 519
TasI AATT 1 cut(s) 141
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 142, 366
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 347, 453
Tsp45I GTSAC 1 cut(s) 361
TspRI CASTG 2 cut(s) 142, 366
Tth111I GACNNNGTC 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.