Rorug01G0337700

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000390
Physical Location & Seq
Forward (+)
45577697 .. 45579573
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0337700.1

Sequence Viewer

Length: 387 bp
ATGAAGTCCAAAGTTTCTGTGAGAGCTCCACATTTATCGTCAGCTCGGATCATACTTAGGGAAATTTGGGAGGAAGAACAAACCAGTAGTTGGTCATGGGAACATTATTCAGCACTGAGAGTTTTTCTTAAAGTATTCGGTTGCTCCAGAAATATATCCCTCTTCACTCGTGATTTTAAGGCTCTCACATTTCCAGCAATTTTCAGAAGGACCTTCTCTTCTTCAAAACCATTGCCTAGACTCGCCCAGCTAATGCTTACGATGCCGAATCCTCCAACAGAAGTGGGAGATGTTCCTGATGACTTCAGGGACTCCTTGACTTGGATGGCACCTTCTTCACGGCTGGAGTTAGTAAGAATGGATAGAATACCGGCCAGCTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

128

Amino Acids

14.83

Weight (kDa)

9.99

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccB7I CCANNNNNTGG 1 cut(s) 90
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 90, 321
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 4 cut(s) 26, 44, 250, 378
AluI AGCT 4 cut(s) 26, 44, 250, 378
Alw21I GWGCWC 1 cut(s) 28
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 210
AvaII GGWCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 28
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 356
BfaI CTAG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 252
BpmI CTGGAG 2 cut(s) 130, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 321
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 230
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 90, 321
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 84
BseYI CCCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 90, 321
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 370
BssMI GATC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 167, 223
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 56, 116
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 1 cut(s) 96
CviJI RGCY 7 cut(s) 26, 44, 182, 250, 343, 374, 378
CviKI_1 RGCY 7 cut(s) 26, 44, 182, 250, 343, 374, 378
DdeI CTNAG 2 cut(s) 56, 116
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 2 cut(s) 167, 223
EarI CTCTTC 2 cut(s) 167, 223
Ecl136II GAGCTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 28
FaeI CATG 1 cut(s) 99
FaiI YATR 3 cut(s) 53, 97, 155
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 95
FokI GGATG 1 cut(s) 337
FriOI GRGCYC 1 cut(s) 28
FspBI CTAG 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 250
GsuI CTGGAG 2 cut(s) 130, 365
HaeIII GGCC 1 cut(s) 374
HapII CCGG 1 cut(s) 371
Hin1II CATG 1 cut(s) 99
HinfI GANTC 3 cut(s) 240, 268, 311
HpaII CCGG 1 cut(s) 371
Hpy188I TCNGA 2 cut(s) 48, 206
Hpy188III TCNNGA 3 cut(s) 147, 170, 296
HpyAV CCTTC 3 cut(s) 201, 223, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 2 cut(s) 56, 116
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 31, 149
LpnPI CCDG 7 cut(s) 97, 160, 207, 260, 292, 309, 329
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 237
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 5 cut(s) 86, 154, 210, 213, 327
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 3 cut(s) 63, 198, 382
MlyI GAGTC 2 cut(s) 234, 305
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 3 cut(s) 64, 170, 282
MseI TTAA 3 cut(s) 129, 177, 381
MspI CCGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 90
PleI GAGTC 2 cut(s) 234, 305
PpsI GAGTC 2 cut(s) 234, 305
PpuMI RGGWCCY 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 210
PspPPI RGGWCCY 1 cut(s) 210
SacI GAGCTC 1 cut(s) 28
SaqAI TTAA 3 cut(s) 129, 177, 381
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 2 cut(s) 234, 305
SduI GDGCHC 1 cut(s) 28
SetI ASST 6 cut(s) 28, 46, 215, 252, 334, 380
SfaNI GCATC 1 cut(s) 252
SinI GGWCC 1 cut(s) 210
Sse9I AATT 3 cut(s) 63, 198, 382
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 28
TasI AATT 3 cut(s) 63, 198, 382
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 129, 177, 381
Tru9I TTAA 3 cut(s) 129, 177, 381
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 63
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.