Rmu_co8402573.1_g000001

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8402573.1
OG0000390
Physical Location & Seq
Forward (+)
1 .. 1175
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8402573.1_g000001.1.cds

Sequence Viewer

Length: 838 bp
gaaccccactgcaacaatttggaaaagtcaagagattaatgatgtattggctccatatgtgccctatttctcatcaagaggtccaaatcctatgaatgccaacattctcaagccagacttagctgctccaggaacttacattctagcagcagttcccccaactgatggtgacagtagagctggatatgactttaaaactgggacatcaatggcatgcccccatgctactgccgttgctgcatacgtcaaatcatttcaccctgaatggtcaccagctgctatcaaatcagctctcatcactaccgctaaacctatgagtgccaaaactagcccgcaagctgaatttgcatatggagctggcctaatcaatccttctagggctccatatcctggtttgatatacgatcttgatgtacaagactatgtagattttttgtgttcacaaggatacagtggtaaactattggaacaagtaaccggggacaagactagctcatgctcatcaaaatctaataatgaaaaagccattgatctgaactatccttcttttactctctgcattaaggatccagaattcgtcaatggggtcttccatagaactgtcactaatgttggatcatcgaactccacatacatagctaaactgttggctccatcgggactcaaaatcaatgtggatccaagtgtgttgtcgttcacatctctaggacaaaagaaatcttttgttgtcacagttaaagggccgattgagaaatcaaatatagcctctgcgtctttagtgtgggatgatggtactttccaagtcaggagccccatcgttgtctatgttacagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

278

Amino Acids

29.72

Weight (kDa)

7.77

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 165, 390
AciI CCGC 2 cut(s) 304, 333
AclWI GGATC 5 cut(s) 561, 574, 623, 672, 685
AcsI RAATTY 2 cut(s) 342, 573
AfaI GTAC 2 cut(s) 415, 794
AfiI CCNNNNNNNGG 2 cut(s) 165, 390
AjnI CCWGG 2 cut(s) 128, 389
AluBI AGCT 8 cut(s) 123, 180, 276, 291, 339, 357, 493, 639
AluI AGCT 8 cut(s) 123, 180, 276, 291, 339, 357, 493, 639
AlwI GGATC 5 cut(s) 561, 574, 623, 672, 685
AoxI GGCC 2 cut(s) 359, 741
ApeKI GCWGC 4 cut(s) 123, 147, 237, 276
ApoI RAATTY 2 cut(s) 342, 573
AseI ATTAAT 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 81, 741
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 180, 249, 262
AvaII GGWCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 64
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BamHI GGATCC 2 cut(s) 566, 677
BanII GRGCYC 2 cut(s) 383, 813
BbsI GAAGAC 1 cut(s) 581
BbvI GCAGC 4 cut(s) 110, 159, 224, 263
BccI CCATC 4 cut(s) 159, 662, 783, 822
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 130, 391
BciVI GTATCC 1 cut(s) 441
BcnI CCSGG 1 cut(s) 479
BfaI CTAG 5 cut(s) 144, 328, 376, 490, 705
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 4 cut(s) 124, 148, 238, 277
BlsI GCNGC 4 cut(s) 125, 149, 239, 278
Bme1390I CCNGG 3 cut(s) 130, 391, 479
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 81, 741
BmiI GGNNCC 6 cut(s) 52, 382, 568, 652, 679, 810
BmrFI CCNGG 3 cut(s) 130, 391, 479
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 390
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 130, 391
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 1 cut(s) 791
BseLI CCNNNNNNNGG 2 cut(s) 165, 390
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 4 cut(s) 110, 159, 224, 263
BshFI GGCC 2 cut(s) 361, 743
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 3 cut(s) 215, 495, 673
BslI CCNNNNNNNGG 2 cut(s) 165, 390
BsmFI GGGAC 3 cut(s) 215, 495, 673
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 2 cut(s) 361, 743
Bsp1286I GDGCHC 3 cut(s) 64, 383, 813
Bsp1407I TGTACA 1 cut(s) 413
Bsp143I GATC 5 cut(s) 404, 530, 566, 615, 677
BspACI CCGC 2 cut(s) 304, 333
BspANI GGCC 2 cut(s) 361, 743
BspLI GGNNCC 6 cut(s) 52, 382, 568, 652, 679, 810
BspPI GGATC 5 cut(s) 561, 574, 623, 672, 685
BsrGI TGTACA 1 cut(s) 413
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 5 cut(s) 404, 530, 566, 615, 677
Bst2UI CCWGG 2 cut(s) 130, 391
Bst4CI ACNGT 6 cut(s) 174, 453, 602, 646, 734, 833
BstAUI TGTACA 1 cut(s) 413
BstC8I GCNNGC 4 cut(s) 215, 333, 337, 359
BstDEI CTNAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 791
BstKTI GATC 5 cut(s) 407, 533, 569, 618, 680
BstMBI GATC 5 cut(s) 404, 530, 566, 615, 677
BstMWI GCNNNNNNNGC 3 cut(s) 237, 345, 354
BstNI CCWGG 2 cut(s) 130, 391
BstNSI RCATGY 1 cut(s) 217
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 128, 389, 477
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 4 cut(s) 110, 159, 224, 263
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 2 cut(s) 566, 677
BstYI RGATCY 2 cut(s) 566, 677
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 361, 743
BtsCI GGATG 1 cut(s) 791
BtsI GCAGTG 1 cut(s) 7
BtsIMutI CAGTG 2 cut(s) 7, 458
Cac8I GCNNGC 4 cut(s) 215, 333, 337, 359
Cfr13I GGNCC 2 cut(s) 81, 741
CseI GACGC 1 cut(s) 760
Csp6I GTAC 2 cut(s) 414, 793
CviAII CATG 3 cut(s) 214, 222, 496
CviQI GTAC 2 cut(s) 414, 793
DdeI CTNAG 1 cut(s) 119
DpnI GATC 5 cut(s) 406, 532, 568, 617, 679
DpnII GATC 5 cut(s) 404, 530, 566, 615, 677
DraI TTTAAA 1 cut(s) 194
Eco24I GRGCYC 2 cut(s) 383, 813
Eco47I GGWCC 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 573
EcoRII CCWGG 2 cut(s) 128, 389
EcoT38I GRGCYC 2 cut(s) 383, 813
FaeI CATG 3 cut(s) 217, 225, 499
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 3 cut(s) 215, 495, 673
FatI CATG 3 cut(s) 213, 221, 495
FauI CCCGC 1 cut(s) 340
FauNDI CATATG 2 cut(s) 56, 350
Fnu4HI GCNGC 4 cut(s) 124, 148, 238, 277
FokI GGATG 1 cut(s) 798
FriOI GRGCYC 2 cut(s) 383, 813
Fsp4HI GCNGC 4 cut(s) 124, 148, 238, 277
FspBI CTAG 5 cut(s) 144, 328, 376, 490, 705
GluI GCNGC 4 cut(s) 124, 148, 238, 277
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 2 cut(s) 361, 743
HapII CCGG 1 cut(s) 478
HgaI GACGC 1 cut(s) 760
Hin1II CATG 3 cut(s) 217, 225, 499
HinfI GANTC 1 cut(s) 661
HpaII CCGG 1 cut(s) 478
HphI GGTGA 3 cut(s) 180, 249, 262
Hpy166II GTNNAC 3 cut(s) 441, 459, 697
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 6 cut(s) 30, 76, 408, 570, 658, 806
Hpy8I GTNNAC 3 cut(s) 441, 459, 697
HpyAV CCTTC 2 cut(s) 382, 553
HpyCH4III ACNGT 6 cut(s) 174, 453, 602, 646, 734, 833
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 12, 240, 348, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 345, 354
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 3 cut(s) 217, 225, 499
Kzo9I GATC 5 cut(s) 404, 530, 566, 615, 677
LmnI GCTCC 6 cut(s) 56, 131, 354, 386, 656, 808
Lsp1109I GCAGC 4 cut(s) 110, 159, 224, 263
MaeI CTAG 5 cut(s) 144, 328, 376, 490, 705
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 6 cut(s) 168, 268, 473, 602, 728, 827
MalI GATC 5 cut(s) 406, 532, 568, 617, 679
MboI GATC 5 cut(s) 404, 530, 566, 615, 677
MboII GAAGA 1 cut(s) 581
MflI RGATCY 2 cut(s) 566, 677
MhlI GDGCHC 3 cut(s) 64, 383, 813
MluCI AATT 3 cut(s) 16, 342, 573
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 2 cut(s) 72, 776
MseI TTAA 5 cut(s) 37, 193, 562, 736, 836
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 3 cut(s) 130, 391, 479
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 2 cut(s) 130, 391
MwoI GCNNNNNNNGC 3 cut(s) 237, 345, 354
NciI CCSGG 1 cut(s) 479
NdeI CATATG 2 cut(s) 56, 350
NdeII GATC 5 cut(s) 404, 530, 566, 615, 677
NlaIII CATG 3 cut(s) 217, 225, 499
NlaIV GGNNCC 6 cut(s) 52, 382, 568, 652, 679, 810
NmuCI GTSAC 4 cut(s) 168, 268, 602, 728
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PctI GAATGC 1 cut(s) 101
PflMI CCANNNNNTGG 2 cut(s) 165, 390
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 4 cut(s) 125, 149, 239, 278
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 128, 389
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 2 cut(s) 128, 389
PspN4I GGNNCC 6 cut(s) 52, 382, 568, 652, 679, 810
PspPI GGNCC 2 cut(s) 81, 741
PsrI GAACNNNNNNTAC 2 cut(s) 615, 647
PsuI RGATCY 2 cut(s) 566, 677
PvuII CAGCTG 1 cut(s) 276
RsaI GTAC 2 cut(s) 415, 794
RsaNI GTAC 2 cut(s) 414, 793
SaqAI TTAA 5 cut(s) 37, 193, 562, 736, 836
SatI GCNGC 4 cut(s) 124, 148, 238, 277
Sau3AI GATC 5 cut(s) 404, 530, 566, 615, 677
Sau96I GGNCC 2 cut(s) 81, 741
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 3 cut(s) 130, 391, 479
SduI GDGCHC 3 cut(s) 64, 383, 813
SinI GGWCC 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SphI GCATGC 1 cut(s) 217
Sse9I AATT 3 cut(s) 16, 342, 573
SsiI CCGC 2 cut(s) 304, 333
SspMI CTAG 5 cut(s) 144, 328, 376, 490, 705
StyD4I CCNGG 3 cut(s) 128, 389, 477
TaaI ACNGT 6 cut(s) 174, 453, 602, 646, 734, 833
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 621
TasI AATT 3 cut(s) 16, 342, 573
TatI WGTACW 1 cut(s) 413
Tru1I TTAA 5 cut(s) 37, 193, 562, 736, 836
Tru9I TTAA 5 cut(s) 37, 193, 562, 736, 836
TscAI CASTG 2 cut(s) 14, 458
TseFI GTSAC 4 cut(s) 168, 268, 602, 728
TseI GCWGC 4 cut(s) 123, 147, 237, 276
Tsp45I GTSAC 4 cut(s) 168, 268, 602, 728
TspDTI ATGAA 2 cut(s) 108, 532
TspRI CASTG 2 cut(s) 14, 458
Van91I CCANNNNNTGG 2 cut(s) 165, 390
VpaK11BI GGWCC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 37
XapI RAATTY 2 cut(s) 342, 573
XceI RCATGY 1 cut(s) 217
XspI CTAG 5 cut(s) 144, 328, 376, 490, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.