Rmu_co8379125.1_g000001

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8379125.1
OG0000390
Physical Location & Seq
Reverse (-)
2 .. 827
826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8379125.1_g000001.1.cds

Sequence Viewer

Length: 689 bp
atgtccttgcagccagatttagcggctccaggaacttacattctggcagcatatcccccaagtggtggtggtagtagagctagatactatatagaaactgggacatcaatggcatgcccccatgctaccgccgtagctgcatacgtcaaatcatttcaccctaaatggtcaccagctgctatccaatcggctctcatcactactgctaaacctatgagtgccaaaactagccctgacgctgaatttgcatacggagctggcctaataaacccttctagggcgccatatcctggtttggtgtatgatcttgatggacaagactacatagattttttgtgttcacaaggatacaatggtaaactattgcaagccataaccatggacaaaactagttgctcatcaaaatctattaatagaacagctaatgacatgaactatccttcttttgcactttccatcaaggattcgaaatttgtcaatggggtcttccatagaactgtcactaatgttggatcgtcaaaatccacatacagagctaaaacggtggctccattgggactcaaaatcaatgtgaatccaagtgtgctatcgttcacatctctcgggcaaaagaaatcttttgttgtcactataaaagggccgattaagaaatcaaatctaatctctgcgtctttggtgtgggatgatgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

230

Amino Acids

24.49

Weight (kDa)

9.48

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccB7I CCANNNNNTGG 2 cut(s) 65, 290
AciI CCGC 2 cut(s) 23, 129
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 2 cut(s) 242, 470
AcyI GRCGYC 1 cut(s) 281
AfiI CCNNNNNNNGG 4 cut(s) 62, 65, 277, 290
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 2 cut(s) 28, 289
AluBI AGCT 6 cut(s) 80, 137, 176, 257, 422, 536
AluI AGCT 6 cut(s) 80, 137, 176, 257, 422, 536
AlwI GGATC 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 2 cut(s) 259, 638
ApeKI GCWGC 4 cut(s) 10, 47, 137, 176
ApoI RAATTY 2 cut(s) 242, 470
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AseI ATTAAT 1 cut(s) 411
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 2 cut(s) 149, 162
AsuII TTCGAA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 602
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 4 cut(s) 22, 59, 124, 163
BccI CCATC 3 cut(s) 305, 464, 680
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 30, 291
BciVI GTATCC 1 cut(s) 341
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 4 cut(s) 81, 228, 276, 390
BfoI RGCGCY 1 cut(s) 284
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 5 cut(s) 11, 24, 48, 138, 177
BlsI GCNGC 5 cut(s) 12, 25, 49, 139, 178
Bme1390I CCNGG 2 cut(s) 30, 291
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 3 cut(s) 27, 282, 549
BmrFI CCNGG 2 cut(s) 30, 291
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 65, 277, 290
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 30, 291
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 4 cut(s) 62, 65, 277, 290
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 4 cut(s) 22, 59, 124, 163
BshFI GGCC 2 cut(s) 261, 640
BshNI GGYRCC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 602
BslFI GGGAC 2 cut(s) 115, 570
BslI CCNNNNNNNGG 4 cut(s) 62, 65, 277, 290
BsmFI GGGAC 2 cut(s) 115, 570
BsnI GGCC 2 cut(s) 261, 640
BsoBI CYCGRG 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 467
Bsp143I GATC 2 cut(s) 304, 512
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 23, 129
BspANI GGCC 2 cut(s) 261, 640
BspLI GGNNCC 3 cut(s) 27, 282, 549
BspPI GGATC 1 cut(s) 520
BspT104I TTCGAA 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 304, 512
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 30, 291
Bst4CI ACNGT 2 cut(s) 499, 544
BstACI GRCGYC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 3 cut(s) 115, 259, 369
BstDSI CCRYGG 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 2 cut(s) 307, 515
BstMBI GATC 2 cut(s) 304, 512
BstMWI GCNNNNNNNGC 3 cut(s) 137, 245, 254
BstNI CCWGG 2 cut(s) 30, 291
BstNSI RCATGY 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 28, 289
BstV1I GCAGC 4 cut(s) 22, 59, 124, 163
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 379
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 261, 640
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 688
Cac8I GCNNGC 3 cut(s) 115, 259, 369
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 638
CseI GACGC 2 cut(s) 245, 657
CviAII CATG 4 cut(s) 114, 122, 379, 430
DinI GGCGCC 1 cut(s) 282
DpnI GATC 2 cut(s) 306, 514
DpnII GATC 2 cut(s) 304, 512
Eco130I CCWWGG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 168
EcoRII CCWGG 2 cut(s) 28, 289
EcoT14I CCWWGG 1 cut(s) 378
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 4 cut(s) 117, 125, 382, 433
FaqI GGGAC 2 cut(s) 115, 570
FatI CATG 4 cut(s) 113, 121, 378, 429
Fnu4HI GCNGC 5 cut(s) 11, 24, 48, 138, 177
Fsp4HI GCNGC 5 cut(s) 11, 24, 48, 138, 177
FspBI CTAG 4 cut(s) 81, 228, 276, 390
GlaI GCGC 1 cut(s) 282
GluI GCNGC 5 cut(s) 11, 24, 48, 138, 177
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 2 cut(s) 261, 640
HgaI GACGC 2 cut(s) 245, 657
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 4 cut(s) 117, 125, 382, 433
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 3 cut(s) 464, 558, 574
HphI GGTGA 2 cut(s) 149, 162
Hpy166II GTNNAC 3 cut(s) 341, 359, 594
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 3 cut(s) 341, 359, 594
HpyAV CCTTC 2 cut(s) 282, 450
HpyCH4III ACNGT 2 cut(s) 499, 544
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 10, 140, 248, 367, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 245, 254
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 4 cut(s) 117, 125, 382, 433
HspAI GCGC 1 cut(s) 281
KasI GGCGCC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 304, 512
LmnI GCTCC 3 cut(s) 31, 254, 553
Lsp1109I GCAGC 4 cut(s) 22, 59, 124, 163
MaeI CTAG 4 cut(s) 81, 228, 276, 390
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 168, 499, 625
MalI GATC 2 cut(s) 306, 514
MboI GATC 2 cut(s) 304, 512
MboII GAAGA 1 cut(s) 478
MluCI AATT 2 cut(s) 242, 470
Mly113I GGCGCC 1 cut(s) 281
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 490
MseI TTAA 2 cut(s) 411, 645
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 30, 291
MvaI CCWGG 2 cut(s) 30, 291
MwoI GCNNNNNNNGC 3 cut(s) 137, 245, 254
NarI GGCGCC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 304, 512
NlaIII CATG 4 cut(s) 117, 125, 382, 433
NlaIV GGNNCC 3 cut(s) 27, 282, 549
NmuCI GTSAC 3 cut(s) 168, 499, 625
NspI RCATGY 1 cut(s) 117
NspV TTCGAA 1 cut(s) 467
PaeI GCATGC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 464, 574
PflMI CCANNNNNTGG 2 cut(s) 65, 290
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 5 cut(s) 12, 25, 49, 139, 178
PleI GAGTC 1 cut(s) 552
PluTI GGCGCC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 28, 289
PspEI GGTNACC 1 cut(s) 168
PspGI CCWGG 2 cut(s) 28, 289
PspN4I GGNNCC 3 cut(s) 27, 282, 549
PspPI GGNCC 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 2 cut(s) 411, 645
SatI GCNGC 5 cut(s) 11, 24, 48, 138, 177
Sau3AI GATC 2 cut(s) 304, 512
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 2 cut(s) 30, 291
SetI ASST 8 cut(s) 82, 139, 147, 178, 214, 259, 424, 538
SfoI GGCGCC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 389
SphI GCATGC 1 cut(s) 117
Sse9I AATT 2 cut(s) 242, 470
SsiI CCGC 2 cut(s) 23, 129
SspDI GGCGCC 1 cut(s) 280
SspMI CTAG 4 cut(s) 81, 228, 276, 390
StyD4I CCNGG 2 cut(s) 28, 289
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 499, 544
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 467
TasI AATT 2 cut(s) 242, 470
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 464, 574
Tru1I TTAA 2 cut(s) 411, 645
Tru9I TTAA 2 cut(s) 411, 645
TseFI GTSAC 3 cut(s) 168, 499, 625
TseI GCWGC 4 cut(s) 10, 47, 137, 176
Tsp45I GTSAC 3 cut(s) 168, 499, 625
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 267
Van91I CCANNNNNTGG 2 cut(s) 65, 290
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 2 cut(s) 242, 470
XceI RCATGY 1 cut(s) 117
XspI CTAG 4 cut(s) 81, 228, 276, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.