Rh1CG174600

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000390
Physical Location & Seq
Reverse (-)
38483846 .. 38485780
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG174600.1

Sequence Viewer

Length: 816 bp
ATGCTTTCTGTGGCTGCTACCACCATAAACCGTCAGTTCATCACCAAGGTTCAATTGGGTAATGGAAAAGTCTATGAGGGACTATTACCAAACATACATGACCTCCAGGGTAAATTCTATCCTTTAATATATGGTGGAGACGCACCTAATACAACAGAAGGTGGTAACGCGACTATGTCAAGGTTCTGTTCCACAAATAGCTTAAAAGATGATTCGATCAGAGGTAAAATTGTGCTTTGCGATAGAGGCCCCGATGGCAGTGGGGATGGGTATGGGGCCATAGAGGCTAAACCTATGAGTGCCAAAACTAGCCCGCACGCTGAATTCGCATATGGAGCTGGCCTACTAAACCCTTCTAGGGCTCCATATCCTGGTTTGGTATACGATCTTGATGAACAAGACTACTTATATTTTTTATGTTCACAAGGATACAATGGTAAACTATTGGAAATCATAACCGGGGACAAGAGTAGCTGCTCATCAAAATCTAATAATGAAACAGCCAATGACCTGAACTATCCTTCTTTTGCTCTTTCAATCAAGGATCCAGAATTCATCAATGGGATCTTCCATAGGACTGTCACTAATGTTGGATCGTCAAATTCCACATACAGAGCTAAAGTGGTGGCTCCATCAGGACTCGAAATCAATGTGAATCCAAATATGCTATCATTCACATCTCTCGGCCAGAAGAAACCTTTTGTTGTTACAGTAAAAGGGTCATTTGAGAAATCAAATATAGTTTCTGCATCTTTGGTGTGGGATAATGGTGATTTCCAAGTCAGGAGCCCGATTGTTGTCTATGTTACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

271

Amino Acids

29.24

Weight (kDa)

6.31

Isoelectric Point (pI)

28.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 170 - 267 8.2e-28 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18050 FvH4_7g18050
malus_domestica MD07G1206200.v1.1 MD07G1206400.v1.1 MD07G1206500.v1.1 MD07G1206700.v1.1 MD07G1207000.v1.1 MD07G1207100.v1.1 MD07G1207200.v1.1
prunus_persica Prupe.2G166200_v2.0.a1 Prupe.2G242000_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242100_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242200_v2.0.a1 Prupe.2G242400_v2.0.a1
pyrus_communis pycom07g19260 pycom07g19280 pycom07g19290
rosa_chinensis RchiOBHm_Chr1g0325901 RchiOBHm_Chr1g0325961 RchiOBHm_Chr1g0344281 RchiOBHm_Chr1g0344291 RchiOBHm_Chr1g0344301 RchiOBHm_Chr1g0368771 RchiOBHm_Chr1g0369141 RchiOBHm_Chr1g0369281 RchiOBHm_Chr1g0369291 RchiOBHm_Chr1g0369661 RchiOBHm_Chr1g0370161 RchiOBHm_Chr4g0396401
rosa_laevigata RLG00000009546 RLG00000027070 RLG00000027140 RLG00000027151 RLG00000027152 RLG00000027190 RLG00000027255 RLG00000028909 RLG00000030094 RLG00000030097
rosa_multiflora Rmu_co8196240.1_g000001 Rmu_co8379125.1_g000001 Rmu_co8402573.1_g000001 Rmu_co8479243.1_g000001 Rmu_sc0000019.1_g000019 Rmu_sc0001154.1_g000009 Rmu_sc0001482.1_g000014 Rmu_sc0004250.1_g000009 Rmu_sc0006696.1_g000002 Rmu_sc0006696.1_g000004 Rmu_sc0008679.1_g000018 Rmu_sc0009743.1_g000003 Rmu_sc0013657.1_g000023
rosa_roxburghii Rroxscaffold_4G00286760 Rroxscaffold_4G00287250 Rroxscaffold_4G00287470 Rroxscaffold_4G00287770 Rroxscaffold_4G00287930 Rroxscaffold_4G00309920 Rroxscaffold_4G00324120
rosa_rugosa Rorug01G0055900 Rorug01G0173100 Rorug01G0173200 Rorug01G0337700 Rorug01G0337800 Rorug01G0337800 Rorug01G0337800 Rorug01G0344900 Rorug01G0349400 Rorug01G0349400 Rorug01G0351700 Rorug01G0354500
rosa_samantha Rh1AG072300 Rh1AG189000 Rh1AG189100 Rh1AG351900 Rh1AG356500 Rh1AG359800 Rh1AG363200 Rh1BG059100 Rh1BG155800 Rh1BG306800 Rh1BG315600 Rh1BG319000 Rh1BG320300 Rh1BG326300 Rh1BG326400 Rh1CG071600 Rh1CG174600 Rh1CG174800 Rh1CG322400 Rh1CG330300 Rh1CG334200 Rh1CG339600
rosa_wichuraiana Rw1G005870 Rw1G005900 Rw1G015560 Rw1G031350 Rw1G031470 Rw1G031700 Rw1G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 170
AciI CCGC 1 cut(s) 314
AclWI GGATC 4 cut(s) 539, 552, 572, 601
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 4 cut(s) 113, 323, 551, 601
AfiI CCNNNNNNNGG 2 cut(s) 358, 371
AgsI TTSAA 2 cut(s) 53, 537
AjnI CCWGG 2 cut(s) 105, 370
AluBI AGCT 4 cut(s) 201, 338, 474, 617
AluI AGCT 4 cut(s) 201, 338, 474, 617
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 4 cut(s) 539, 552, 572, 601
AoxI GGCC 4 cut(s) 247, 276, 340, 685
ApeKI GCWGC 2 cut(s) 14, 474
ApoI RAATTY 4 cut(s) 113, 323, 551, 601
AspS9I GGNCC 2 cut(s) 248, 276
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 2 cut(s) 34, 782
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BamHI GGATCC 1 cut(s) 544
BanII GRGCYC 2 cut(s) 364, 791
BbvI GCAGC 1 cut(s) 461
BccI CCATC 3 cut(s) 248, 260, 640
BciT130I CCWGG 2 cut(s) 107, 372
BciVI GTATCC 1 cut(s) 422
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 309, 357
BfuI GTATCC 1 cut(s) 422
BglI GCCNNNNNGGC 2 cut(s) 255, 284
BisI GCNGC 2 cut(s) 15, 475
BlsI GCNGC 2 cut(s) 16, 476
Bme1390I CCNGG 3 cut(s) 107, 372, 460
BmgT120I GGNCC 2 cut(s) 248, 276
BmiI GGNNCC 6 cut(s) 250, 277, 363, 546, 630, 788
BmrFI CCNGG 3 cut(s) 107, 372, 460
BmsI GCATC 1 cut(s) 758
BpmI CTGGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 45, 106, 459
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 371
BseBI CCWGG 2 cut(s) 107, 372
BseDI CCNNGG 3 cut(s) 45, 106, 459
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 358, 371
BseXI GCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 4 cut(s) 249, 278, 342, 687
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 2 cut(s) 93, 476
BslI CCNNNNNNNGG 2 cut(s) 358, 371
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 93, 476
BsnI GGCC 4 cut(s) 249, 278, 342, 687
Bsp1286I GDGCHC 2 cut(s) 364, 791
Bsp143I GATC 5 cut(s) 216, 385, 544, 564, 593
BspACI CCGC 1 cut(s) 314
BspANI GGCC 4 cut(s) 249, 278, 342, 687
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 6 cut(s) 250, 277, 363, 546, 630, 788
BspPI GGATC 4 cut(s) 539, 552, 572, 601
BssECI CCNNGG 3 cut(s) 45, 106, 459
BssMI GATC 5 cut(s) 216, 385, 544, 564, 593
BssNAI GTATAC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 2 cut(s) 107, 372
Bst4CI ACNGT 4 cut(s) 32, 580, 712, 811
BstC8I GCNNGC 3 cut(s) 314, 318, 340
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 5 cut(s) 219, 388, 547, 567, 596
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 5 cut(s) 216, 385, 544, 564, 593
BstMWI GCNNNNNNNGC 5 cut(s) 246, 255, 284, 326, 335
BstNI CCWGG 2 cut(s) 107, 372
BstSCI CCNGG 3 cut(s) 105, 370, 458
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 461
BstX2I RGATCY 2 cut(s) 544, 564
BstYI RGATCY 2 cut(s) 544, 564
BstZ17I GTATAC 1 cut(s) 382
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 4 cut(s) 249, 278, 342, 687
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 314, 318, 340
Cfr13I GGNCC 2 cut(s) 248, 276
CseI GACGC 1 cut(s) 149
CviAII CATG 1 cut(s) 98
DpnI GATC 5 cut(s) 218, 387, 546, 566, 595
DpnII GATC 5 cut(s) 216, 385, 544, 564, 593
EaeI YGGCCR 1 cut(s) 685
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 364, 791
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 2 cut(s) 323, 551
EcoRII CCWGG 2 cut(s) 105, 370
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 364, 791
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 101
FaqI GGGAC 2 cut(s) 93, 476
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 321
FauNDI CATATG 1 cut(s) 331
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 15, 475
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 2 cut(s) 364, 791
Fsp4HI GCNGC 2 cut(s) 15, 475
FspBI CTAG 2 cut(s) 309, 357
GluI GCNGC 2 cut(s) 15, 475
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 4 cut(s) 249, 278, 342, 687
HapII CCGG 1 cut(s) 459
HgaI GACGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 101
HinfI GANTC 3 cut(s) 212, 639, 655
HpaII CCGG 1 cut(s) 459
HphI GGTGA 2 cut(s) 34, 782
Hpy166II GTNNAC 3 cut(s) 382, 422, 440
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 4 cut(s) 389, 548, 636, 784
Hpy8I GTNNAC 3 cut(s) 382, 422, 440
HpyAV CCTTC 3 cut(s) 152, 363, 531
HpyCH4III ACNGT 4 cut(s) 32, 580, 712, 811
HpyCH4V TGCA 1 cut(s) 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 255, 284, 326, 335
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 5 cut(s) 216, 385, 544, 564, 593
LmnI GCTCC 4 cut(s) 335, 367, 634, 786
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 1 cut(s) 758
MaeI CTAG 2 cut(s) 309, 357
MaeIII GTNAC 4 cut(s) 164, 580, 706, 805
MalI GATC 5 cut(s) 218, 387, 546, 566, 595
MboI GATC 5 cut(s) 216, 385, 544, 564, 593
MboII GAAGA 2 cut(s) 559, 703
MfeI CAATTG 1 cut(s) 53
MflI RGATCY 2 cut(s) 544, 564
MhlI GDGCHC 2 cut(s) 364, 791
MluCI AATT 6 cut(s) 53, 113, 228, 323, 551, 601
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 5 cut(s) 70, 113, 215, 239, 277
MseI TTAA 3 cut(s) 125, 203, 814
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 3 cut(s) 107, 372, 460
MunI CAATTG 1 cut(s) 53
MvaI CCWGG 2 cut(s) 107, 372
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 5 cut(s) 246, 255, 284, 326, 335
NciI CCSGG 1 cut(s) 460
NdeI CATATG 1 cut(s) 331
NdeII GATC 5 cut(s) 216, 385, 544, 564, 593
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 6 cut(s) 250, 277, 363, 546, 630, 788
NmeAIII GCCGAG 1 cut(s) 663
NmuCI GTSAC 1 cut(s) 580
PfeI GAWTC 2 cut(s) 212, 655
PflFI GACNNNGTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 2 cut(s) 16, 476
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 105, 370
PspGI CCWGG 2 cut(s) 105, 370
PspN4I GGNNCC 6 cut(s) 250, 277, 363, 546, 630, 788
PspPI GGNCC 2 cut(s) 248, 276
PsuI RGATCY 2 cut(s) 544, 564
PsyI GACNNNGTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 125, 203, 814
SatI GCNGC 2 cut(s) 15, 475
Sau3AI GATC 5 cut(s) 216, 385, 544, 564, 593
Sau96I GGNCC 2 cut(s) 248, 276
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 3 cut(s) 107, 372, 460
SduI GDGCHC 2 cut(s) 364, 791
SfaNI GCATC 1 cut(s) 758
Sse9I AATT 6 cut(s) 53, 113, 228, 323, 551, 601
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 309, 357
StyD4I CCNGG 3 cut(s) 105, 370, 458
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 4 cut(s) 32, 580, 712, 811
TaqI TCGA 2 cut(s) 215, 642
TasI AATT 6 cut(s) 53, 113, 228, 323, 551, 601
TfiI GAWTC 2 cut(s) 212, 655
Tru1I TTAA 3 cut(s) 125, 203, 814
Tru9I TTAA 3 cut(s) 125, 203, 814
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 14, 474
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 4 cut(s) 28, 408, 510, 544
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 371
XapI RAATTY 4 cut(s) 113, 323, 551, 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 2 cut(s) 309, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.