Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

70522 .. 71109

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggctggcatgagaagcacgcagaggtgtgagggcatgaataggttaatcaaagactctattgggagcggcatgaaactagtcgaagtcgttcctaggatggaccgagcactcatgagattgagaaacaatcaagtaagggatgactttatcactataaactcaacccctgttctcgaaactcacctaaaagacttggagaatcatgcagcttctatctacacatacgatgtgtttaagtgggttaggaaggagatcaggaaggagagccaagccacactactccagggaccagagtactttgaagatgggcaccgtgtttacacaatgtcagcttacaagcggcttgattttgagcacaagctagtttactaccatgggaaaaacactgaaagtgcaacagacccaatcatggtatgttcttgtaacatgtttcagtataggggattcccatgtcgtcacatgttcacactgatgaaacacgaacacatcaatgagattcaaaagtcactgattgtgaagagatggtcgaagtctgctagagatgtgtgttcaatcaaacatccagaacaagatatttccaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

195

Amino Acids

22.95

Weight (kDa)

9.17

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	140 - 155	4.8e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	2 cut(s)	69, 343
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	2 cut(s)	429, 462
AgsI	TTSAA	3 cut(s)	305, 503, 555
AhlI	ACTAGT	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	212, 335, 364
AluI	AGCT	3 cut(s)	212, 335, 364
Alw21I	GWGCWC	2 cut(s)	112, 360
ApeKI	GCWGC	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	103, 290
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	103, 290
AvrII	CCTAGG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	112, 360
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	3 cut(s)	94, 302, 519
BciT130I	CCWGG	1 cut(s)	287
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	4 cut(s)	80, 96, 365, 540
BisI	GCNGC	3 cut(s)	70, 210, 344
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	3 cut(s)	71, 211, 345
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	2 cut(s)	103, 290
BmgT120I	GGNCC	2 cut(s)	103, 290
BmiI	GGNNCC	2 cut(s)	291, 314
BmrFI	CCNGG	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	95, 286, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	3 cut(s)	95, 286, 376
BseGI	GGATG	3 cut(s)	105, 148, 562
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	112, 360
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	303
Bsp1286I	GDGCHC	3 cut(s)	112, 315, 360
Bsp143I	GATC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	2 cut(s)	69, 343
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	291, 314
BspT107I	GGYRCC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	95, 286, 376
BssMI	GATC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	95, 376
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	7, 20
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	105, 148, 562
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	433, 466
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	105, 148, 562
BtsIMutI	CAGTG	3 cut(s)	387, 470, 509
Cac8I	GCNNGC	2 cut(s)	7, 20
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	103, 290
Csp6I	GTAC	1 cut(s)	298
CviJI	RGCY	7 cut(s)	5, 212, 270, 275, 335, 346, 364
CviKI_1	RGCY	7 cut(s)	5, 212, 270, 275, 335, 346, 364
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	95, 376
Eco47I	GGWCC	2 cut(s)	103, 290
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	95, 376
ErhI	CCWWGG	2 cut(s)	95, 376
FaqI	GGGAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	70, 210, 344
FokI	GGATG	3 cut(s)	112, 155, 549
Fsp4HI	GCNGC	3 cut(s)	70, 210, 344
FspBI	CTAG	4 cut(s)	80, 96, 365, 540
GluI	GCNGC	3 cut(s)	70, 210, 344
GsuI	CTGGAG	1 cut(s)	269
HinfI	GANTC	4 cut(s)	56, 202, 447, 499
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	322, 370, 468
Hpy188III	TCNNGA	4 cut(s)	115, 176, 259, 566
Hpy8I	GTNNAC	3 cut(s)	322, 370, 468
HpyAV	CCTTC	2 cut(s)	244, 256
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	209, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	183, 244, 272, 299, 306, 579
Lsp1109I	GCAGC	1 cut(s)	221
MaeI	CTAG	4 cut(s)	80, 96, 365, 540
MaeIII	GTNAC	3 cut(s)	425, 458, 507
MalI	GATC	1 cut(s)	257
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	255
MboII	GAAGA	2 cut(s)	317, 532
MhlI	GDGCHC	3 cut(s)	112, 315, 360
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	2 cut(s)	18, 25
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	47, 237
MslI	CAYNNNNRTG	2 cut(s)	473, 492
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	255
NlaIV	GGNNCC	2 cut(s)	291, 314
NmuCI	GTSAC	2 cut(s)	458, 507
NspI	RCATGY	2 cut(s)	433, 466
PagI	TCATGA	1 cut(s)	114
PciI	ACATGT	2 cut(s)	429, 462
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	202, 447, 499
PkrI	GCNGC	3 cut(s)	71, 211, 345
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	2 cut(s)	429, 462
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	291, 314
PspPI	GGNCC	2 cut(s)	103, 290
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	473, 492
SaqAI	TTAA	2 cut(s)	47, 237
SatI	GCNGC	3 cut(s)	70, 210, 344
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	2 cut(s)	103, 290
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	3 cut(s)	112, 315, 360
SetI	ASST	6 cut(s)	29, 47, 189, 214, 337, 366
SinI	GGWCC	2 cut(s)	103, 290
SmiMI	CAYNNNNRTG	2 cut(s)	473, 492
SpeI	ACTAGT	1 cut(s)	79
SsiI	CCGC	2 cut(s)	69, 343
SspMI	CTAG	4 cut(s)	80, 96, 365, 540
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	95, 376
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	84, 177, 530
TaqII	GACCGA	1 cut(s)	120
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	2 cut(s)	72, 346
TfiI	GAWTC	3 cut(s)	202, 447, 499
Tru1I	TTAA	2 cut(s)	47, 237
Tru9I	TTAA	2 cut(s)	47, 237
TscAI	CASTG	3 cut(s)	394, 477, 516
TseFI	GTSAC	2 cut(s)	458, 507
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	458, 507
TspDTI	ATGAA	3 cut(s)	53, 89, 491
TspRI	CASTG	3 cut(s)	394, 477, 516
VpaK11BI	GGWCC	2 cut(s)	103, 290
XceI	RCATGY	2 cut(s)	433, 466
XmaJI	CCTAGG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	4 cut(s)	80, 96, 365, 540
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.