Rmu_sc0002522.1_g000026

amidase C869.01

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002522.1
OG0000427
Physical Location & Seq
Reverse (-)
89599 .. 89940
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002522.1_g000026.1.cds

Sequence Viewer

Length: 342 bp
ctgaacagaaaccttaggggtgtcatagaggtgaaccctgatgcgttatcccaagctgatatagctgacaaagaacgcagagaatgcaaccacacactgcctaagcttcatggcattcctattctgctcaaggataacatagcaaccaaggacaaacttaacataacagctggctcgttttccttgttggggtccattgtgcctcgagatgcaggtgttgtttctaagctaaggaggtctggagctatcattctagggaaggctagcttgagtgaatggagcaactttagaacatcatgggcacccaacggttggagcgccagaggtcccaaggaaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787 GO:0016810 GO:0016811
KEGG Pathways
Metabolic & Signaling
ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120
Pfam Domains
Protein Families
Amidase

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

10.2

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34880 AT4G34880
fragaria_vesca FvH4_2g01710 FvH4_2g01720 FvH4_2g01722
malus_domestica MD05G1117000.v1.1 MD05G1117200.v1.1 MD10G1120200.v1.1 MD10G1120300.v1.1 MD10G1120400.v1.1
prunus_persica Prupe.8G161600_v2.0.a1 Prupe.8G161700_v2.0.a1 Prupe.8G161700_v2.0.a1 Prupe.8G161800_v2.0.a1 Prupe.8G161900_v2.0.a1
pyrus_communis pycom05g06760 pycom10g10360 pycom10g10370 pycom17g11700
rosa_chinensis RchiOBHm_Chr6g0244611 RchiOBHm_Chr6g0244621 RchiOBHm_Chr6g0244631 RchiOBHm_Chr6g0244671 RchiOBHm_Chr6g0244701 RchiOBHm_Chr6g0244721 RchiOBHm_Chr6g0244741 RchiOBHm_Chr6g0244751
rosa_laevigata RLG00000015331 RLG00000015332 RLG00000015333 RLG00000015334 RLG00000015336 RLG00000015338 RLG00000015339 RLG00000015340
rosa_multiflora Rmu_co8154324.1_g000001 Rmu_co8259027.1_g000001 Rmu_co8319583.1_g000001 Rmu_sc0002064.1_g000004 Rmu_sc0002522.1_g000021 Rmu_sc0002522.1_g000022 Rmu_sc0002522.1_g000023 Rmu_sc0002522.1_g000026 Rmu_sc0002522.1_g000027 Rmu_sc0006257.1_g000002 Rmu_sc0006635.1_g000001 Rmu_sc0006635.1_g000002 Rmu_sc0007349.1_g000001 Rmu_sc0011292.1_g000009 Rmu_sc0011292.1_g000010 Rmu_sc0039466.1_g000001
rosa_roxburghii Rroxscaffold_7G00215530 Rroxscaffold_7G00215550 Rroxscaffold_7G00215560 Rroxscaffold_7G00215570 Rroxscaffold_7G00215610 Rroxscaffold_7G00215620 Rroxscaffold_7G00215630 Rroxscaffold_7G00215640
rosa_rugosa Rorug05G0509900 Rorug05G0510000 Rorug05G0510000 Rorug05G0510100 Rorug05G0510100 Rorug05G0510200 Rorug05G0510300 Rorug05G0510400
rosa_samantha Rh6BG020500 Rh6BG020600 Rh6BG020700 Rh6BG020900 Rh6BG021000 Rh6BG021100 Rh6BG021200 Rh6CG018800 Rh6CG019000 Rh6CG019100 Rh6CG019200 Rh6CG019300 Rh6CG019400 Rh6CG019600 Rh6CG019800 Rh6DG019900 Rh6DG020100 Rh6DG020200 Rh6DG020400
rosa_wichuraiana Rw0G014670 Rw6G000010 Rw6G000020 Rw6G002100 Rw6G002110 Rw6G002120 Rw6G002140 Rw6G002150 Rw6G002160 Rw6G005110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 189, 312, 336
AluBI AGCT 7 cut(s) 56, 65, 106, 170, 229, 245, 267
AluI AGCT 7 cut(s) 56, 65, 106, 170, 229, 245, 267
Ama87I CYCGRG 1 cut(s) 204
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 192, 326
AsuHPI GGTGA 1 cut(s) 43
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 2 cut(s) 192, 326
AxyI CCTNAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 301
BfaI CTAG 2 cut(s) 254, 264
BfoI RGCGCY 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 192, 326
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 192, 326
BmiI GGNNCC 3 cut(s) 193, 303, 328
BmsI GCATC 2 cut(s) 31, 199
BmtI GCTAGC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 2 cut(s) 102, 230
BpuEI CTTGAG 2 cut(s) 113, 289
BsaJI CCNNGG 2 cut(s) 147, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 312, 336
Bse21I CCTNAGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 147, 330
BseLI CCNNNNNNNGG 3 cut(s) 189, 312, 336
BseSI GKGCMC 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 189, 312, 336
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 89, 114
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 193, 303, 328
BspMI ACCTGC 1 cut(s) 203
BspOI GCTAGC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 147, 330
BssT1I CCWWGG 2 cut(s) 147, 330
Bst4CI ACNGT 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 172, 265
BstDEI CTNAG 4 cut(s) 14, 102, 225, 230
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 62, 84
BstSLI GKGCMC 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 172, 265
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 192, 326
CviAII CATG 2 cut(s) 110, 297
CviJI RGCY 9 cut(s) 56, 65, 106, 170, 174, 229, 245, 263, 267
CviKI_1 RGCY 9 cut(s) 56, 65, 106, 170, 174, 229, 245, 263, 267
DdeI CTNAG 4 cut(s) 14, 102, 225, 230
Eco130I CCWWGG 2 cut(s) 147, 330
Eco47I GGWCC 2 cut(s) 192, 326
Eco81I CCTNAGG 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 147, 330
ErhI CCWWGG 2 cut(s) 147, 330
FaeI CATG 2 cut(s) 113, 300
FaiI YATR 6 cut(s) 26, 62, 111, 140, 164, 298
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 312
FatI CATG 2 cut(s) 109, 296
FspBI CTAG 2 cut(s) 254, 264
GlaI GCGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 321
HhaI GCGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 113, 300
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 104
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 206, 240
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 87, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 84
HpyF3I CTNAG 4 cut(s) 14, 102, 225, 230
Hsp92II CATG 2 cut(s) 113, 300
HspAI GCGC 1 cut(s) 318
LmnI GCTCC 3 cut(s) 242, 279, 315
LpnPI CCDG 5 cut(s) 51, 156, 198, 225, 334
LweI GCATC 2 cut(s) 31, 199
MaeI CTAG 2 cut(s) 254, 264
MhlI GDGCHC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 4 cut(s) 22, 213, 228, 317
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 170
Mva1269I GAATGC 2 cut(s) 89, 114
MwoI GCNNNNNNNGC 2 cut(s) 62, 84
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 2 cut(s) 113, 300
NlaIV GGNNCC 3 cut(s) 193, 303, 328
PaeR7I CTCGAG 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 203
PctI GAATGC 2 cut(s) 89, 114
PflMI CCANNNNNTGG 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 193, 303, 328
PspPI GGNCC 2 cut(s) 192, 326
PspPPI RGGWCCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 192, 326
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 2 cut(s) 31, 199
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 192, 326
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 3 cut(s) 128, 204, 268
SmoI CTYRAG 3 cut(s) 128, 204, 268
SspMI CTAG 2 cut(s) 254, 264
StyI CCWWGG 2 cut(s) 147, 330
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 205
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 192, 326
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 2 cut(s) 254, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.