Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000427

Physical Location & Seq

Genomic Coordinates Reverse (-)

1872076 .. 1873932

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGTGCCATTTCAGGTCATTCCTAGCACCTTCTGGATGGAGCGCCAGAGGTTCCCAAGGGATGGTGAGTTAAAGAATCCTTACAATTCATCGGTGGAAGTTTGTGGATCAAGTAGCGGACCTGCAATATCAGTAGCTGCTAATATGGTTTCTGTGACATTAGGGACGGAGACTGACAGCTCCATTATCTGTCCGGCTAGCTTTAACTCTGTGGTGGGCATCAAACCCACTGTTGGTCTCACTAGTCGAGCAGGAGTCATACCAATCAGTCCAAGACAGGACACAGTTGGGCCGATTTGTAGGACTGTAGCGGATGCTGTTCACGTCCTTGACATCATTGTTGGCATTGATAGGAATGATAATGCAACAAGTGAAGCATCAAAGTACATCCCAATGGGTGGCTATGGACAGTTTCTCAAGCATAATGGCCTCAAAGGAAAGAGATTGGGGATAGTAAATATGTTATTTGATTCAATCAAGGACGATGCTTTTCTGAAACAAACTTTTGTGCAGCATTTTACCACACTGAGGAAACAAGGTGCAGTTTTGGTTGACAATCTTGAAATAGCCAATATTGAAGATGTTCTGGATTCTCATTCAAGTGGAGAATTTGATGCAATATTAGCTGAATTCAAAATAGCCTTGAATGAGTACCTAAGTGACCTAGTAAAATCTCCAGTGAAGTCCTCAAGGGAGGTGATAGAGTTCAACAAGAATCATTCAAAGGTGGAAAAGATCAATGAATATGGGCAAGATGTCTTCGAATTAGCTGAGAAGACTAATGGGATGGGACCGAAAGAGCAGGAGGCATTGTCAAATTTAAAAAGACTATCTAAACAGGGGTTCAAGAAGTTGATGACCGATCATAGCCTAGATGCCTTGGTGGCTTATGCTAACAGTGCTTCTACTATCCTCGCAATTGGTGGTTTTCCGGGCATTGTTGTGCCGGCAGGATATCATAACACTAAAAAGTATCCTTTTGGGATCTGCTTTGGGGGACTCAAGGGTTCAGAGCCAAAGCTGATTGAGATCGCCTATGCCTTTGAGCAAGCAACTAAGATAAGGAGAAAGCCTCCTCTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016810 GO:0016811

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase

Protein Analysis

361

Amino Acids

39.29

Weight (kDa)

7.66

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidase	PF01425	22 - 295	4.5e-37	Amidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34880 AT4G34880
fragaria_vesca	FvH4_2g01710 FvH4_2g01720 FvH4_2g01722
malus_domestica	MD05G1117000.v1.1 MD05G1117200.v1.1 MD10G1120200.v1.1 MD10G1120300.v1.1 MD10G1120400.v1.1
prunus_persica	Prupe.8G161600_v2.0.a1 Prupe.8G161700_v2.0.a1 Prupe.8G161700_v2.0.a1 Prupe.8G161800_v2.0.a1 Prupe.8G161900_v2.0.a1
pyrus_communis	pycom05g06760 pycom10g10360 pycom10g10370 pycom17g11700
rosa_chinensis	RchiOBHm_Chr6g0244611 RchiOBHm_Chr6g0244621 RchiOBHm_Chr6g0244631 RchiOBHm_Chr6g0244671 RchiOBHm_Chr6g0244701 RchiOBHm_Chr6g0244721 RchiOBHm_Chr6g0244741 RchiOBHm_Chr6g0244751
rosa_laevigata	RLG00000015331 RLG00000015332 RLG00000015333 RLG00000015334 RLG00000015336 RLG00000015338 RLG00000015339 RLG00000015340
rosa_multiflora	Rmu_co8154324.1_g000001 Rmu_co8259027.1_g000001 Rmu_co8319583.1_g000001 Rmu_sc0002064.1_g000004 Rmu_sc0002522.1_g000021 Rmu_sc0002522.1_g000022 Rmu_sc0002522.1_g000023 Rmu_sc0002522.1_g000026 Rmu_sc0002522.1_g000027 Rmu_sc0006257.1_g000002 Rmu_sc0006635.1_g000001 Rmu_sc0006635.1_g000002 Rmu_sc0007349.1_g000001 Rmu_sc0011292.1_g000009 Rmu_sc0011292.1_g000010 Rmu_sc0039466.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215530 Rroxscaffold_7G00215550 Rroxscaffold_7G00215560 Rroxscaffold_7G00215570 Rroxscaffold_7G00215610 Rroxscaffold_7G00215620 Rroxscaffold_7G00215630 Rroxscaffold_7G00215640
rosa_rugosa	Rorug05G0509900 Rorug05G0510000 Rorug05G0510000 Rorug05G0510100 Rorug05G0510100 Rorug05G0510200 Rorug05G0510300 Rorug05G0510400
rosa_samantha	Rh6BG020500 Rh6BG020600 Rh6BG020700 Rh6BG020900 Rh6BG021000 Rh6BG021100 Rh6BG021200 Rh6CG018800 Rh6CG019000 Rh6CG019100 Rh6CG019200 Rh6CG019300 Rh6CG019400 Rh6CG019600 Rh6CG019800 Rh6DG019900 Rh6DG020100 Rh6DG020200 Rh6DG020400
rosa_wichuraiana	Rw0G014670 Rw6G000010 Rw6G000020 Rw6G002100 Rw6G002110 Rw6G002120 Rw6G002140 Rw6G002150 Rw6G002160 Rw6G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	62, 398
AciI	CCGC	2 cut(s)	117, 311
AclWI	GGATC	2 cut(s)	115, 992
AcsI	RAATTY	3 cut(s)	608, 629, 817
AfaI	GTAC	2 cut(s)	386, 653
AfiI	CCNNNNNNNGG	4 cut(s)	62, 233, 398, 528
AgsI	TTSAA	9 cut(s)	474, 563, 578, 600, 634, 646, 709, 723, 847
AhlI	ACTAGT	1 cut(s)	242
AjiI	CACGTC	1 cut(s)	325
AluBI	AGCT	6 cut(s)	137, 180, 201, 626, 770, 1021
AluI	AGCT	6 cut(s)	137, 180, 201, 626, 770, 1021
Alw26I	GTCTC	2 cut(s)	164, 242
AlwI	GGATC	2 cut(s)	115, 992
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	290, 427
ApeKI	GCWGC	2 cut(s)	137, 511
ApoI	RAATTY	3 cut(s)	608, 629, 817
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	119, 290, 791
AsuC2I	CCSGG	1 cut(s)	933
AsuHPI	GGTGA	2 cut(s)	77, 709
AsuII	TTCGAA	1 cut(s)	762
AsuNHI	GCTAGC	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	119, 791
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	751, 782
BbvI	GCAGC	2 cut(s)	124, 523
BccI	CCATC	3 cut(s)	31, 56, 781
BciVI	GTATCC	1 cut(s)	984
BcnI	CCSGG	1 cut(s)	933
BcoDI	GTCTC	2 cut(s)	164, 242
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	6 cut(s)	24, 198, 243, 665, 872, 1079
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	130
BfuI	GTATCC	1 cut(s)	984
BglI	GCCNNNNNGGC	1 cut(s)	884
BisI	GCNGC	2 cut(s)	138, 512
BlsI	GCNGC	2 cut(s)	139, 513
Bme1390I	CCNGG	1 cut(s)	933
Bme18I	GGWCC	2 cut(s)	119, 791
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	119, 290, 791
BmiI	GGNNCC	3 cut(s)	6, 53, 792
BmrFI	CCNGG	1 cut(s)	933
BmsI	GCATC	6 cut(s)	228, 304, 386, 475, 604, 865
BmtI	GCTAGC	1 cut(s)	201
BpiI	GAAGAC	2 cut(s)	751, 782
BplI	GAGNNNNNCTC	1 cut(s)	1057
BpmI	CTGGAG	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	762
BpuEI	CTTGAG	3 cut(s)	401, 673, 986
BpuMI	CCSGG	1 cut(s)	933
BsaBI	GATNNNNATC	1 cut(s)	1028
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	56, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 233, 398, 528
Bse118I	RCCGGY	1 cut(s)	946
Bse1I	ACTGG	1 cut(s)	677
Bse8I	GATNNNNATC	1 cut(s)	1028
BseDI	CCNNGG	2 cut(s)	56, 879
BseGI	GGATG	5 cut(s)	42, 67, 319, 387, 792
BseJI	GATNNNNATC	1 cut(s)	1028
BseLI	CCNNNNNNNGG	4 cut(s)	62, 233, 398, 528
BseMII	CTCAG	2 cut(s)	518, 762
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	1 cut(s)	1065
BseXI	GCAGC	2 cut(s)	124, 523
BsgI	GTGCAG	2 cut(s)	530, 561
BshFI	GGCC	2 cut(s)	292, 429
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	3 cut(s)	194, 932, 947
BslFI	GGGAC	3 cut(s)	178, 804, 1011
BslI	CCNNNNNNNGG	4 cut(s)	62, 233, 398, 528
BsmAI	GTCTC	2 cut(s)	164, 242
BsmFI	GGGAC	3 cut(s)	178, 804, 1011
BsnI	GGCC	2 cut(s)	292, 429
Bso31I	GGTCTC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	762
Bsp143I	GATC	5 cut(s)	107, 735, 862, 984, 1029
BspACI	CCGC	2 cut(s)	117, 311
BspANI	GGCC	2 cut(s)	292, 429
BspCNI	CTCAG	2 cut(s)	519, 763
BspLI	GGNNCC	3 cut(s)	6, 53, 792
BspMI	ACCTGC	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	115, 992
BspT104I	TTCGAA	1 cut(s)	762
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	946
BsrI	ACTGG	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	946
BssECI	CCNNGG	2 cut(s)	56, 879
BssMI	GATC	5 cut(s)	107, 735, 862, 984, 1029
BssT1I	CCWWGG	2 cut(s)	56, 879
Bst4CI	ACNGT	5 cut(s)	232, 286, 307, 411, 899
BstBI	TTCGAA	1 cut(s)	762
BstC8I	GCNNGC	3 cut(s)	199, 948, 1050
BstDEI	CTNAG	4 cut(s)	527, 656, 771, 1056
BstF5I	GGATG	5 cut(s)	42, 67, 319, 387, 792
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	5 cut(s)	110, 738, 865, 987, 1032
BstMAI	GTCTC	2 cut(s)	164, 242
BstMBI	GATC	5 cut(s)	107, 735, 862, 984, 1029
BstMWI	GCNNNNNNNGC	3 cut(s)	623, 884, 899
BstSCI	CCNGG	1 cut(s)	931
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	124, 523
BstV2I	GAAGAC	2 cut(s)	751, 782
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	984
BsuRI	GGCC	2 cut(s)	292, 429
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	5 cut(s)	42, 67, 319, 387, 792
BtsIMutI	CAGTG	4 cut(s)	228, 524, 684, 904
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	199, 948, 1050
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	946
Cfr13I	GGNCC	3 cut(s)	119, 290, 791
Csp6I	GTAC	2 cut(s)	385, 652
CviQI	GTAC	2 cut(s)	385, 652
DdeI	CTNAG	4 cut(s)	527, 656, 771, 1056
DpnI	GATC	5 cut(s)	109, 737, 864, 986, 1031
DpnII	GATC	5 cut(s)	107, 735, 862, 984, 1029
DraI	TTTAAA	1 cut(s)	822
Eco130I	CCWWGG	2 cut(s)	56, 879
Eco31I	GGTCTC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	956
Eco47I	GGWCC	2 cut(s)	119, 791
EcoRI	GAATTC	1 cut(s)	629
EcoRV	GATATC	1 cut(s)	956
EcoT14I	CCWWGG	2 cut(s)	56, 879
ErhI	CCWWGG	2 cut(s)	56, 879
FaqI	GGGAC	3 cut(s)	178, 804, 1011
Fnu4HI	GCNGC	2 cut(s)	138, 512
FokI	GGATG	5 cut(s)	49, 74, 326, 374, 799
Fsp4HI	GCNGC	2 cut(s)	138, 512
FspBI	CTAG	6 cut(s)	24, 198, 243, 665, 872, 1079
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	138, 512
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	292, 429
HapII	CCGG	3 cut(s)	194, 932, 947
HhaI	GCGC	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	6 cut(s)	76, 255, 470, 590, 715, 999
HpaII	CCGG	3 cut(s)	194, 932, 947
HphI	GGTGA	2 cut(s)	77, 709
Hpy166II	GTNNAC	2 cut(s)	322, 553
Hpy188I	TCNGA	2 cut(s)	495, 1012
Hpy188III	TCNNGA	4 cut(s)	34, 560, 587, 847
Hpy8I	GTNNAC	2 cut(s)	322, 553
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	5 cut(s)	232, 286, 307, 411, 899
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	125, 365, 511, 542, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	623, 884, 899
HpyF3I	CTNAG	4 cut(s)	527, 656, 771, 1056
HpySE526I	ACGT	1 cut(s)	324
HspAI	GCGC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	946
KroNI	GCCGGC	1 cut(s)	948
Kzo9I	GATC	5 cut(s)	107, 735, 862, 984, 1029
LmnI	GCTCC	2 cut(s)	40, 185
Lsp1109I	GCAGC	2 cut(s)	124, 523
LweI	GCATC	6 cut(s)	228, 304, 386, 475, 604, 865
MaeI	CTAG	6 cut(s)	24, 198, 243, 665, 872, 1079
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	154, 659
MalI	GATC	5 cut(s)	109, 737, 864, 986, 1031
MboI	GATC	5 cut(s)	107, 735, 862, 984, 1029
MboII	GAAGA	3 cut(s)	590, 751, 787
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	1 cut(s)	984
MluCI	AATT	6 cut(s)	85, 608, 629, 764, 817, 918
MlyI	GAGTC	2 cut(s)	264, 993
MnlI	CCTC	9 cut(s)	42, 440, 522, 688, 697, 799, 923, 1083, 1086
MroNI	GCCGGC	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	3 cut(s)	71, 204, 821
MslI	CAYNNNNRTG	3 cut(s)	392, 600, 941
MspI	CCGG	3 cut(s)	194, 932, 947
MspR9I	CCNGG	1 cut(s)	933
MunI	CAATTG	1 cut(s)	918
MwoI	GCNNNNNNNGC	3 cut(s)	623, 884, 899
NaeI	GCCGGC	1 cut(s)	948
NciI	CCSGG	1 cut(s)	933
NdeII	GATC	5 cut(s)	107, 735, 862, 984, 1029
NgoMIV	GCCGGC	1 cut(s)	946
NheI	GCTAGC	1 cut(s)	197
NlaIV	GGNNCC	3 cut(s)	6, 53, 792
NmuCI	GTSAC	2 cut(s)	154, 659
NspV	TTCGAA	1 cut(s)	762
PdiI	GCCGGC	1 cut(s)	948
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	4 cut(s)	76, 470, 590, 715
PflMI	CCANNNNNTGG	2 cut(s)	62, 398
PkrI	GCNGC	2 cut(s)	139, 513
PleI	GAGTC	2 cut(s)	263, 993
PpsI	GAGTC	2 cut(s)	263, 993
PspN4I	GGNNCC	3 cut(s)	6, 53, 792
PspPI	GGNCC	3 cut(s)	119, 290, 791
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	984
RsaI	GTAC	2 cut(s)	386, 653
RsaNI	GTAC	2 cut(s)	385, 652
RseI	CAYNNNNRTG	3 cut(s)	392, 600, 941
SaqAI	TTAA	3 cut(s)	71, 204, 821
SatI	GCNGC	2 cut(s)	138, 512
Sau3AI	GATC	5 cut(s)	107, 735, 862, 984, 1029
Sau96I	GGNCC	3 cut(s)	119, 290, 791
SchI	GAGTC	2 cut(s)	264, 993
ScrFI	CCNGG	1 cut(s)	933
SfaNI	GCATC	6 cut(s)	228, 304, 386, 475, 604, 865
SfcI	CTRYAG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	762
SinI	GGWCC	2 cut(s)	119, 791
SmiMI	CAYNNNNRTG	3 cut(s)	392, 600, 941
SmlI	CTYRAG	3 cut(s)	416, 688, 1001
SmoI	CTYRAG	3 cut(s)	416, 688, 1001
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	6 cut(s)	85, 608, 629, 764, 817, 918
SsiI	CCGC	2 cut(s)	117, 311
SspI	AATATT	2 cut(s)	574, 621
SspMI	CTAG	6 cut(s)	24, 198, 243, 665, 872, 1079
StyD4I	CCNGG	1 cut(s)	931
StyI	CCWWGG	2 cut(s)	56, 879
TaaI	ACNGT	5 cut(s)	232, 286, 307, 411, 899
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	247, 762
TaqII	GACCGA	2 cut(s)	808, 875
TasI	AATT	6 cut(s)	85, 608, 629, 764, 817, 918
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	4 cut(s)	76, 470, 590, 715
Tru1I	TTAA	3 cut(s)	71, 204, 821
Tru9I	TTAA	3 cut(s)	71, 204, 821
TscAI	CASTG	4 cut(s)	235, 531, 684, 904
TseFI	GTSAC	2 cut(s)	154, 659
TseI	GCWGC	2 cut(s)	137, 511
Tsp45I	GTSAC	2 cut(s)	154, 659
TspDTI	ATGAA	2 cut(s)	78, 756
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	4 cut(s)	235, 531, 684, 904
Van91I	CCANNNNNTGG	2 cut(s)	62, 398
VpaK11BI	GGWCC	2 cut(s)	119, 791
XapI	RAATTY	3 cut(s)	608, 629, 817
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	6 cut(s)	24, 198, 243, 665, 872, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.