AT1G59950

Non-functional NADPH-dependent codeinone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000205
Physical Location & Seq
Reverse (-)
22068033 .. 22070588
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59950.1

Sequence Viewer

Length: 963 bp
ATGTCAGCTCTTACGTTCCCTATCGGATCCGTTCATCACTTGATGCCGGTTCTAGCTCTTGGAACTGCTGCGTCTCCTCCACCCGAACCAATAGTGTTGAAACGGACGGTGTTGGAAGCCATCAAGCTCGGTTATCGTCACTTCGACACCTCTCCTAGGTACCAGACGGAGGAACCGCTTGGTGAAGCTTTGGCGGAGGCGGTTTCTCTCGGGTTAATCCAATCTCGATCAGAACTCTTCGTCACTTCTAAGCTATGGTGTGCCGATGCTCATGGTGGCCTTGTTGTACCGGCGATCCAACGGAGTTTGGAAACTCTTAAATTGGACTATCTCGATCTCTACCTAATCCACTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTTCCCTATAGAAGAAGATGACTTTTTGCCAATGGATTATGAAACAGTTTGGTCTGAGATGGAAGAGTGTCAGAGACTCGGAGTTGCAAAGTGTATAGGAGTAAGCAACTTCTCATGCAAGAAACTCCAACACATCCTTTCAATAGCAAAAATCCCACCTAGTGTCAATCAAGTGGAGATGAGTCCAGTATGGCAACAGAGAAAACTGAGGGAGTTATGTAAGTCGAAAGGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCGAGAGGAGCGTTTTGGGGAACTCACAAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGAGGCAAAGGGAAAAACAGTAGCTCAGGTGAGTATGAGATGGGCTTACGAGGAAGGAGTGAGCATGGTGGTGAAGAGCTTTAGGAAAGACAGATTGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAACAGAGAATCTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTACATCTCGGAGAAAGGTCCTATAAAATCTGTCACCGAGATGTGGGACGGTGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

320

Amino Acids

36.03

Weight (kDa)

5.9

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 20 - 287 1.1e-53 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 159
AciI CCGC 3 cut(s) 176, 194, 200
AclWI GGATC 5 cut(s) 21, 34, 289, 652, 893
AcoI YGGCCR 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 836
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 2 cut(s) 161, 288
AfiI CCNNNNNNNGG 4 cut(s) 156, 169, 355, 945
AgsI TTSAA 2 cut(s) 100, 525
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 9 cut(s) 8, 56, 127, 188, 253, 363, 629, 731, 786
AluI AGCT 9 cut(s) 8, 56, 127, 188, 253, 363, 629, 731, 786
Alw26I GTCTC 2 cut(s) 78, 451
AlwI GGATC 5 cut(s) 21, 34, 289, 652, 893
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 277, 353
ApeKI GCWGC 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
Asp718I GGTACC 1 cut(s) 159
AspA2I CCTAGG 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 920
AsuHPI GGTGA 4 cut(s) 194, 748, 790, 928
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 920
AvrII CCTAGG 1 cut(s) 155
BamHI GGATCC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 128, 436, 741
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 78, 451
BfaI CTAG 3 cut(s) 53, 156, 543
BfmI CTRYAG 1 cut(s) 390
BglII AGATCT 1 cut(s) 957
BisI GCNGC 1 cut(s) 69
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 920
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 3 cut(s) 28, 161, 174
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 33, 256
Bpu10I CCTNAGC 2 cut(s) 708, 732
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 169, 355, 945
Bse118I RCCGGY 3 cut(s) 46, 289, 355
Bse1I ACTGG 2 cut(s) 356, 569
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 4 cut(s) 156, 169, 355, 945
BseMII CTCAG 5 cut(s) 429, 581, 699, 746, 890
BseNI ACTGG 2 cut(s) 356, 569
BseRI GAGGAG 4 cut(s) 66, 666, 857, 860
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 279, 355
BshNI GGYRCC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 47, 290, 356
BslI CCNNNNNNNGG 4 cut(s) 156, 169, 355, 945
BsmAI GTCTC 2 cut(s) 78, 451
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 279, 355
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
BspACI CCGC 3 cut(s) 176, 194, 200
BspANI GGCC 2 cut(s) 279, 355
BspCNI CTCAG 5 cut(s) 430, 582, 700, 745, 889
BspLI GGNNCC 3 cut(s) 28, 161, 174
BspPI GGATC 5 cut(s) 21, 34, 289, 652, 893
BspQI GCTCTTC 1 cut(s) 776
BspT107I GGYRCC 1 cut(s) 159
BsrFI RCCGGY 3 cut(s) 46, 289, 355
BsrI ACTGG 2 cut(s) 356, 569
BssAI RCCGGY 3 cut(s) 46, 289, 355
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 4 cut(s) 109, 430, 727, 953
Bst6I CTCTTC 4 cut(s) 242, 441, 776, 801
BstDEI CTNAG 6 cut(s) 249, 438, 590, 708, 732, 876
BstENI CCTNNNNNAGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 7 cut(s) 29, 230, 297, 337, 647, 888, 960
BstMAI GTCTC 2 cut(s) 78, 451
BstMBI GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 26, 957
BstYI RGATCY 2 cut(s) 26, 957
BsuRI GGCC 2 cut(s) 279, 355
BtsCI GGATG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 349
Cfr10I RCCGGY 3 cut(s) 46, 289, 355
Cfr13I GGNCC 1 cut(s) 920
CseI GACGC 1 cut(s) 60
CsiI ACCWGGT 1 cut(s) 370
Csp6I GTAC 2 cut(s) 160, 287
CviAII CATG 4 cut(s) 272, 498, 679, 772
CviQI GTAC 2 cut(s) 160, 287
DdeI CTNAG 6 cut(s) 249, 438, 590, 708, 732, 876
DpnI GATC 7 cut(s) 28, 229, 296, 336, 646, 887, 959
DpnII GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
DraIII CACNNNGTG 1 cut(s) 545
EaeI YGGCCR 1 cut(s) 353
Eam1104I CTCTTC 4 cut(s) 242, 441, 776, 801
EarI CTCTTC 4 cut(s) 242, 441, 776, 801
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 920
Eco57I CTGAAG 1 cut(s) 836
Eco88I CYCGRG 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 920
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 4 cut(s) 275, 501, 682, 775
FatI CATG 4 cut(s) 271, 497, 678, 771
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 3 cut(s) 53, 156, 543
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 279, 355
HapII CCGG 3 cut(s) 47, 290, 356
HgaI GACGC 1 cut(s) 60
Hin1II CATG 4 cut(s) 275, 501, 682, 775
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 5 cut(s) 459, 565, 683, 811, 858
HpaII CCGG 3 cut(s) 47, 290, 356
HphI GGTGA 4 cut(s) 194, 748, 790, 928
Hpy166II GTNNAC 2 cut(s) 892, 904
Hpy188III TCNNGA 4 cut(s) 225, 332, 648, 862
Hpy8I GTNNAC 2 cut(s) 892, 904
Hpy99I CGWCG 1 cut(s) 868
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 4 cut(s) 109, 430, 727, 953
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 470, 501
HpyF3I CTNAG 6 cut(s) 249, 438, 590, 708, 732, 876
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 4 cut(s) 275, 501, 682, 775
KpnI GGTACC 1 cut(s) 163
Kzo9I GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 33, 256
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 3 cut(s) 53, 156, 543
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 4 cut(s) 137, 241, 622, 934
MalI GATC 7 cut(s) 28, 229, 296, 336, 646, 887, 959
MboI GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
MboII GAAGA 7 cut(s) 229, 407, 410, 458, 793, 818, 829
MflI RGATCY 2 cut(s) 26, 957
MluCI AATT 2 cut(s) 320, 702
MlyI GAGTC 3 cut(s) 453, 574, 692
MmeI TCCRAC 3 cut(s) 93, 322, 535
MseI TTAA 2 cut(s) 215, 318
MslI CAYNNNNRTG 3 cut(s) 620, 776, 941
MspI CCGG 3 cut(s) 47, 290, 356
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
NdeII GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
NlaIII CATG 4 cut(s) 275, 501, 682, 775
NlaIV GGNNCC 3 cut(s) 28, 161, 174
NmuCI GTSAC 4 cut(s) 137, 241, 622, 934
PciSI GCTCTTC 1 cut(s) 776
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PfeI GAWTC 2 cut(s) 811, 858
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 3 cut(s) 453, 573, 691
PpsI GAGTC 3 cut(s) 453, 573, 691
PpuMI RGGWCCY 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 28, 161, 174
PspPI GGNCC 1 cut(s) 920
PspPPI RGGWCCY 1 cut(s) 920
PsuI RGATCY 2 cut(s) 26, 957
RsaI GTAC 2 cut(s) 161, 288
RsaNI GTAC 2 cut(s) 160, 287
RseI CAYNNNNRTG 3 cut(s) 620, 776, 941
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 215, 318
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 7 cut(s) 26, 227, 294, 334, 644, 885, 957
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 3 cut(s) 453, 574, 692
ScrFI CCNGG 1 cut(s) 372
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 2 cut(s) 33, 256
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 920
SmiMI CAYNNNNRTG 3 cut(s) 620, 776, 941
Sse9I AATT 2 cut(s) 320, 702
SsiI CCGC 3 cut(s) 176, 194, 200
SspMI CTAG 3 cut(s) 53, 156, 543
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 4 cut(s) 109, 430, 727, 953
TaiI ACGT 1 cut(s) 17
TaqI TCGA 7 cut(s) 144, 226, 333, 365, 608, 647, 863
TasI AATT 2 cut(s) 320, 702
TfiI GAWTC 2 cut(s) 811, 858
Tru1I TTAA 2 cut(s) 215, 318
Tru9I TTAA 2 cut(s) 215, 318
TscAI CASTG 1 cut(s) 356
TseFI GTSAC 4 cut(s) 137, 241, 622, 934
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 4 cut(s) 137, 241, 622, 934
TspDTI ATGAA 2 cut(s) 23, 438
TspGWI ACGGA 6 cut(s) 19, 118, 182, 316, 881, 909
TspRI CASTG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 920
XagI CCTNNNNNAGG 1 cut(s) 154
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 3 cut(s) 53, 156, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.