Rh1DG100300

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
18813716 .. 18814256
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG100300.1

Sequence Viewer

Length: 399 bp
ATGAACCCGCTATGGCAGCAGAAAAAGCTGAGAGAGTTTTGTGAAAGAAAAGGTATAATCATCACTGCCTTCTCTCCTTTGGGGGCAAAAGGGACACCGTGGGGAACAAATGGAGTGATGGAATGTGAGACGCTCAAACAAATTGCTGAAGCAAAAAGGAAAACTCTTGCTCAGGTTTGTCTGAGATGGGCATATGAGCAAGGGGTGAGTGTGGTGGTGAAGAGCTTTAACAAAGAGAGGATTAAGGAAAATATGGACATATTTGAATGGGAGCTGCTGCCTGAGGAAGTTGACAAGATCAATCAAATTCCACAAAAGAGAGGATTTCAAGCATCCGAGTTCGTTTCAGATAATGGCCCTTTCAAGTCTCTAGAAGAGCTTTGGGATGGAGATATTTAA

Protein Analysis

132

Amino Acids

15.24

Weight (kDa)

5.64

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 103 1.6e-14 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 3 cut(s) 266, 329, 364
AluBI AGCT 4 cut(s) 28, 225, 274, 379
AluI AGCT 4 cut(s) 28, 225, 274, 379
Alw26I GTCTC 2 cut(s) 122, 372
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 3 cut(s) 16, 274, 277
ApoI RAATTY 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 2 cut(s) 217, 229
AxyI CCTNAGG 1 cut(s) 282
BbvI GCAGC 3 cut(s) 28, 261, 264
BccI CCATC 3 cut(s) 112, 180, 380
BcoDI GTCTC 2 cut(s) 122, 372
BfaI CTAG 1 cut(s) 371
BisI GCNGC 3 cut(s) 17, 275, 278
BlsI GCNGC 3 cut(s) 18, 276, 279
BmgT120I GGNCC 1 cut(s) 356
BmsI GCATC 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 2 cut(s) 332, 391
BseMII CTCAG 4 cut(s) 20, 173, 185, 273
BseXI GCAGC 3 cut(s) 28, 261, 264
BshFI GGCC 1 cut(s) 357
BslFI GGGAC 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 122, 372
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 4 cut(s) 21, 174, 184, 274
BspQI GCTCTTC 2 cut(s) 215, 369
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 2 cut(s) 215, 369
BstDEI CTNAG 4 cut(s) 29, 171, 182, 282
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 332, 391
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 122, 372
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 16, 25
BstV1I GCAGC 3 cut(s) 28, 261, 264
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 332, 391
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 1 cut(s) 139
CviJI RGCY 5 cut(s) 28, 225, 274, 357, 379
CviKI_1 RGCY 5 cut(s) 28, 225, 274, 357, 379
DdeI CTNAG 4 cut(s) 29, 171, 182, 282
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 215, 369
EarI CTCTTC 2 cut(s) 215, 369
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 122
FaiI YATR 6 cut(s) 13, 56, 193, 195, 254, 260
FaqI GGGAC 1 cut(s) 106
FauI CCCGC 1 cut(s) 15
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 17, 275, 278
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 17, 275, 278
FspBI CTAG 1 cut(s) 371
GluI GCNGC 3 cut(s) 17, 275, 278
HaeIII GGCC 1 cut(s) 357
HgaI GACGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HphI GGTGA 2 cut(s) 217, 229
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 183, 337, 349
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 25
HpyF3I CTNAG 4 cut(s) 29, 171, 182, 282
Kzo9I GATC 1 cut(s) 297
LguI GCTCTTC 2 cut(s) 215, 369
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 2 cut(s) 158, 294
Lsp1109I GCAGC 3 cut(s) 28, 261, 264
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 371
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 232, 386
MluCI AATT 2 cut(s) 141, 306
MnlI CCTC 3 cut(s) 231, 277, 314
MseI TTAA 3 cut(s) 228, 243, 397
MwoI GCNNNNNNNGC 2 cut(s) 16, 25
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 297
PciSI GCTCTTC 2 cut(s) 215, 369
PkrI GCNGC 3 cut(s) 18, 276, 279
PspPI GGNCC 1 cut(s) 356
SapI GCTCTTC 2 cut(s) 215, 369
SaqAI TTAA 3 cut(s) 228, 243, 397
SatI GCNGC 3 cut(s) 17, 275, 278
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 356
SetI ASST 6 cut(s) 30, 55, 177, 227, 276, 381
SfaNI GCATC 1 cut(s) 341
Sse9I AATT 2 cut(s) 141, 306
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 99
TasI AATT 2 cut(s) 141, 306
Tru1I TTAA 3 cut(s) 228, 243, 397
Tru9I TTAA 3 cut(s) 228, 243, 397
TscAI CASTG 1 cut(s) 70
TseI GCWGC 3 cut(s) 16, 274, 277
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 306
XbaI TCTAGA 1 cut(s) 370
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.