Rh6BG255300

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000205
Physical Location & Seq
Reverse (-)
46775448 .. 46780823
5376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG255300.1

Sequence Viewer

Length: 513 bp
ATGGCAGCAACCCAAATCCCAGAGGTGGTTCTTGAATCCTCCAATGGCCGCAGGACCATGCCTGTGCTTGGCTTCGGCACAGCATCCGACAATTTACAACCAGAGGTTTTGATAGAAGCTGTTCTCGAGGCCATCAAGCTCGGCTACCGTCACTTCGACACGGCTTCCCTGTACGGCTCGGAGCAGAGTCTGGGAGAAGCCATAGCCCAAGCACTCAAACTCGGCCTCGTGGCTTCTCGAGACGAGCTCTTCATTACTTCCAAGCTTTGGACCAATGATGCTCACCCTGATTTGGTTCTTCCTGCTCTAAACAAATCCCTTGAGAATCTTCAATTGGATTACCTTGATCTGATAGCCACATTAGCATGTCACCATACAGACCAGTTCCAATTCAAGAAAATGTTGCAACCGCTATATAAAGCACAGAGCAATACAATTCAAATGGTAATGGACGTGCAAAGGAGATGCCCTGCTCTTCCAAGCCAACCAAAAGCTAATCCACCTTCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

170

Amino Acids

18.7

Weight (kDa)

5.51

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 118 8.6e-18 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 2 cut(s) 49, 410
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 506
AgsI TTSAA 4 cut(s) 35, 332, 394, 440
AjiI CACGTC 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 5 cut(s) 119, 139, 247, 265, 494
AluI AGCT 5 cut(s) 119, 139, 247, 265, 494
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 2 cut(s) 125, 237
AoxI GGCC 3 cut(s) 46, 129, 223
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 54, 270
AsuHPI GGTGA 2 cut(s) 275, 362
AvaI CYCGRG 2 cut(s) 125, 237
AvaII GGWCC 2 cut(s) 54, 270
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 140
BceAI ACGGC 2 cut(s) 177, 190
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 2 cut(s) 6, 49
BlsI GCNGC 2 cut(s) 7, 50
Bme18I GGWCC 2 cut(s) 54, 270
BmeT110I CYCGRG 2 cut(s) 125, 237
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 54, 270
BmsI GCATC 3 cut(s) 92, 268, 455
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpuEI CTTGAG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 506
Bse1I ACTGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 506
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 48, 131, 225
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 125, 237
BslI CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 506
BsmAI GTCTC 1 cut(s) 234
BsmBI CGTCTC 1 cut(s) 234
BsnI GGCC 3 cut(s) 48, 131, 225
BsoBI CYCGRG 2 cut(s) 125, 237
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 2 cut(s) 49, 410
BspANI GGCC 3 cut(s) 48, 131, 225
BspQI GCTCTTC 2 cut(s) 254, 480
BsrI ACTGG 1 cut(s) 382
BssMI GATC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 2 cut(s) 254, 480
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 3 cut(s) 48, 131, 225
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 54, 270
Csp6I GTAC 1 cut(s) 172
CviAII CATG 2 cut(s) 58, 366
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 254, 480
EarI CTCTTC 2 cut(s) 254, 480
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 54, 270
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 489
Eco88I CYCGRG 2 cut(s) 125, 237
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 61, 369
FaiI YATR 6 cut(s) 59, 203, 367, 375, 415, 417
FatI CATG 2 cut(s) 57, 365
Fnu4HI GCNGC 2 cut(s) 6, 49
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 6, 49
GluI GCNGC 2 cut(s) 6, 49
HaeIII GGCC 3 cut(s) 48, 131, 225
Hin1II CATG 2 cut(s) 61, 369
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 35, 187, 325
HphI GGTGA 2 cut(s) 275, 362
Hpy188I TCNGA 3 cut(s) 88, 181, 351
Hpy188III TCNNGA 5 cut(s) 32, 125, 237, 239, 394
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 2 cut(s) 406, 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 2 cut(s) 61, 369
Kzo9I GATC 1 cut(s) 346
LguI GCTCTTC 2 cut(s) 254, 480
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 92, 268, 455
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 149, 368
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 4 cut(s) 241, 290, 320, 467
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 4 cut(s) 91, 332, 389, 435
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 16, 49, 97, 121, 236
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 511
MslI CAYNNNNRTG 2 cut(s) 62, 364
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 1 cut(s) 346
NlaIII CATG 2 cut(s) 61, 369
NmeAIII GCCGAG 2 cut(s) 120, 201
NmuCI GTSAC 2 cut(s) 149, 368
NspI RCATGY 1 cut(s) 369
PaeR7I CTCGAG 2 cut(s) 125, 237
PciSI GCTCTTC 2 cut(s) 254, 480
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 35, 325
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 2 cut(s) 7, 50
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 54, 270
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 2 cut(s) 62, 364
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 254, 480
SaqAI TTAA 1 cut(s) 511
SatI GCNGC 2 cut(s) 6, 49
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 2 cut(s) 54, 270
SchI GAGTC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 3 cut(s) 92, 268, 455
Sfr274I CTCGAG 2 cut(s) 125, 237
SinI GGWCC 2 cut(s) 54, 270
SlaI CTCGAG 2 cut(s) 125, 237
SmiMI CAYNNNNRTG 2 cut(s) 62, 364
SmlI CTYRAG 3 cut(s) 125, 237, 320
SmoI CTYRAG 3 cut(s) 125, 237, 320
Sse9I AATT 4 cut(s) 91, 332, 389, 435
SsiI CCGC 2 cut(s) 49, 410
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 126, 156, 238
TasI AATT 4 cut(s) 91, 332, 389, 435
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 35, 325
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TseFI GTSAC 2 cut(s) 149, 368
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 149, 368
TspDTI ATGAA 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 54, 270
XceI RCATGY 1 cut(s) 369
XhoI CTCGAG 2 cut(s) 125, 237
XmnI GAANNNNTTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.