Rroxscaffold_6G00398750

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000205
Physical Location & Seq
Reverse (-)
20635814 .. 20636615
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398750.1

Sequence Viewer

Length: 519 bp
ATGGAGGAGTCACAGAGACTTGGCCTCACCAAATCCATAAGAGTCAGCAATTTCTCTTCCAAAAAGACTGAAAATCTGCTCTCTTTTGCTACTATTCCTCCTTCTGTCAATCAAGTGGAGATGAGCCCATTTTGGCAACAAAAGAAGCTGAGAGACTTCTGCAAGGCTAATGGTGTAGTTGTGACAGCCTACTCCCCATTGGGTGGCAGTGGGACAAGTTGGGGAAGCAGTCATATTCCGGAGAGCAAAGTGCTTCAGGAAATCGCCGAGGCTCGGGGGAAGACTACTGCTCAGGTTTGTATTAGGTGGGTGTACCAAACAGGGACAACAGTTGCAGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTTGACTGGGAACTATCAGAAGAGGACCTAGACAAGATCAATCAGATCCCACAGCACAAGATGATACTTAGAGAAGAGTATGTTTCGGCGCATGGACCGTACAAGTCCCTTGAAGAATTCTGGGATGGAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

172

Amino Acids

19.56

Weight (kDa)

6.84

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 143 3.4e-27 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AccB7I CCANNNNNTGG 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 238
AclWI GGATC 1 cut(s) 421
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 314, 482
AfiI CCNNNNNNNGG 2 cut(s) 203, 273
AgsI TTSAA 2 cut(s) 364, 494
AluBI AGCT 3 cut(s) 148, 345, 514
AluI AGCT 3 cut(s) 148, 345, 514
Alw26I GTCTC 2 cut(s) 10, 147
AlwI GGATC 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 273
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 406, 476
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 2 cut(s) 406, 476
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 287
BccI CCATC 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 10, 147
BfaI CTAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 367
Bme18I GGWCC 2 cut(s) 406, 476
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 406, 476
BmrI ACTGGG 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 273
Bse1I ACTGG 1 cut(s) 392
BseAI TCCGGA 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 2 cut(s) 203, 273
BseMII CTCAG 2 cut(s) 140, 305
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 395
BshFI GGCC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 3 cut(s) 226, 337, 472
BslI CCNNNNNNNGG 2 cut(s) 203, 273
BsmAI GTCTC 2 cut(s) 10, 147
BsmFI GGGAC 3 cut(s) 226, 337, 472
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 128
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 417, 426
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 141, 304
BspEI TCCGGA 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 2 cut(s) 417, 426
Bst4CI ACNGT 2 cut(s) 331, 480
Bst6I CTCTTC 3 cut(s) 61, 396, 450
BstAPI GCANNNNNTGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 149, 291, 449
BstF5I GGATG 1 cut(s) 511
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 2 cut(s) 420, 429
BstMAI GTCTC 2 cut(s) 10, 147
BstMBI GATC 2 cut(s) 417, 426
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 367
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 406, 476
Csp6I GTAC 2 cut(s) 313, 481
CviAII CATG 1 cut(s) 473
CviJI RGCY 8 cut(s) 24, 126, 148, 167, 188, 272, 345, 514
CviKI_1 RGCY 8 cut(s) 24, 126, 148, 167, 188, 272, 345, 514
CviQI GTAC 2 cut(s) 313, 481
DdeI CTNAG 3 cut(s) 149, 291, 449
DpnI GATC 2 cut(s) 419, 428
DpnII GATC 2 cut(s) 417, 426
Eam1104I CTCTTC 3 cut(s) 61, 396, 450
EarI CTCTTC 3 cut(s) 61, 396, 450
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 406, 476
Eco57I CTGAAG 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 1 cut(s) 476
FaiI YATR 4 cut(s) 38, 234, 462, 474
FaqI GGGAC 3 cut(s) 226, 337, 472
FatI CATG 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 128
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 471
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 472
Hin1II CATG 1 cut(s) 476
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 2 cut(s) 8, 42
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 400, 426
Hpy188III TCNNGA 2 cut(s) 239, 257
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 331, 480
HpyCH4V TGCA 3 cut(s) 162, 335, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 3 cut(s) 149, 291, 449
Hsp92II CATG 1 cut(s) 476
HspAI GCGC 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 417, 426
LpnPI CCDG 7 cut(s) 242, 252, 278, 306, 362, 373, 487
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 9, 181
MalI GATC 2 cut(s) 419, 428
MboI GATC 2 cut(s) 417, 426
MboII GAAGA 5 cut(s) 48, 292, 413, 467, 506
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 2 cut(s) 49, 497
MlyI GAGTC 2 cut(s) 17, 51
MnlI CCTC 5 cut(s) 35, 108, 262, 351, 397
MroI TCCGGA 1 cut(s) 238
MseI TTAA 2 cut(s) 339, 517
MspI CCGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 2 cut(s) 417, 426
NlaIII CATG 1 cut(s) 476
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 9, 181
PaqCI CACCTGC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 203
PleI GAGTC 2 cut(s) 16, 50
PpsI GAGTC 2 cut(s) 16, 50
PpuMI RGGWCCY 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 406
PspPI GGNCC 2 cut(s) 406, 476
PspPPI RGGWCCY 1 cut(s) 406
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 2 cut(s) 314, 482
RsaNI GTAC 2 cut(s) 313, 481
SaqAI TTAA 2 cut(s) 339, 517
Sau3AI GATC 2 cut(s) 417, 426
Sau96I GGNCC 2 cut(s) 406, 476
SchI GAGTC 2 cut(s) 17, 51
SduI GDGCHC 1 cut(s) 128
SetI ASST 8 cut(s) 150, 297, 308, 347, 362, 381, 411, 516
SinI GGWCC 2 cut(s) 406, 476
Sse9I AATT 2 cut(s) 49, 497
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 2 cut(s) 331, 480
TasI AATT 2 cut(s) 49, 497
Tru1I TTAA 2 cut(s) 339, 517
Tru9I TTAA 2 cut(s) 339, 517
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 2 cut(s) 9, 181
Tsp45I GTSAC 2 cut(s) 9, 181
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 406, 476
XapI RAATTY 1 cut(s) 497
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.