Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

68358372 .. 68359235

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG449500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGCTTTTTGCTACTTCCAACTTCCAAGCTTTGGTGCACGGATGCACACCATCACCTAGTCCTGCCTGCCATTCATAAAACACTCAAGAATCTAGGATTGGAATACCTAGATTTGTATCTCATTCATTGGCCTGTGAGTTTGGAGCCGGGAAGCTATGACATACCTGTTAAGAAAGAGGATCTTCTTCCTATGGACTTCAAGTCTGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGGAGTCAGCAATTTCTCATGCAAAAAGATTGAAATCTTGCTTTCCACTGCAAAAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

117

Amino Acids

13.24

Weight (kDa)

6.17

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	10 - 117	4.5e-22	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	33
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	33, 250
AgsI	TTSAA	2 cut(s)	202, 290
AhdI	GACNNNNNGTC	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	6, 31, 156, 238
AluI	AGCT	4 cut(s)	6, 31, 156, 238
Alw21I	GWGCWC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	131, 241
ApaLI	GTGCAC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	47, 238
BaeGI	GKGCMC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	4 cut(s)	59, 95, 110, 239
BfmI	CTRYAG	2 cut(s)	321, 350
Bme1390I	CCNGG	1 cut(s)	150
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	2 cut(s)	117, 290
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 250
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	2 cut(s)	117, 290
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	2 cut(s)	117, 290
BseLI	CCNNNNNNNGG	2 cut(s)	33, 250
BseMI	GCAATG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	41
BshFI	GGCC	2 cut(s)	133, 243
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	33, 250
BsnI	GGCC	2 cut(s)	133, 243
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	133, 243
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	321, 350
BstSLI	GKGCMC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	133, 243
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	69
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	7 cut(s)	6, 31, 133, 148, 156, 238, 243
CviKI_1	RGCY	7 cut(s)	6, 31, 133, 148, 156, 238, 243
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	279
FaiI	YATR	6 cut(s)	78, 159, 164, 194, 277, 352
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	275
FokI	GGATG	1 cut(s)	56
FspBI	CTAG	4 cut(s)	59, 95, 110, 239
HaeIII	GGCC	2 cut(s)	133, 243
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	91, 261
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	47, 238
Hpy166II	GTNNAC	2 cut(s)	39, 328
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	39, 328
HpyCH4V	TGCA	5 cut(s)	39, 47, 279, 308, 323
Hsp92II	CATG	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	77, 81, 147, 162, 180, 245, 333
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	4 cut(s)	59, 95, 110, 239
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	176, 179, 236
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	172, 254, 327
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	33
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	7 cut(s)	8, 33, 60, 111, 158, 169, 240
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	321, 350
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	268
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	4 cut(s)	59, 95, 110, 239
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	249
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	65, 116
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	248
XspI	CTAG	4 cut(s)	59, 95, 110, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.