Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

63040270 .. 63042753

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAAGCATAAGCATTCTGGAGTTGCCACTGCTAGCCTCCCCAAGTAGTTACAGTATTCCGGTGCAAGGTCTAGGAACGGCTGTATATCCTTTTCCTGCCTCTGAACAAAGTAGAGAAAAAGAAGCCATTCTCAGTGCAATCAAAATTGGTTACAGACATTTTGATACGGCAGTGGCTTACCAGACTGAGCAAGTTCTTGGTCAAGCTATCGGCGAAGCTATTTCTCTTGGCCTCATCAAATCCCGGGATGAACTTTTTGTTACTTCCAAGCGTTGGTGCTGTGATGCACACCCTCACCGTGTCCTCCCTGCCATTCAGAACACCCTCAAGAATCTAAGATTGGAGTACCTTAACCTTTATCTGATTCATTGGCCTGTGAAGCACTTTCTTCCTATAGACTTTAAGGGGGTGTGGGAAACCATGAAAGATTGTCAGAAGCTAGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGATCCAAACCTTGCTTGCCACTGCCGAAATCCCTCCTGCAGTCAATCAAGTAGAGATGAATCCAGTATGGCGGCAGAAGAAGTTGAGAGAATTGTGTAAGAGAAAGGGTATAATTGTCAAGGCCTACTCTCCTTTGGGGGGAAAAGGAATACCTTGGGGATCAAACGCGGTAATGGAATGTGAAGTTTGTTTGAGGTGGCTTTATGAGCAAGTGGTGAGTTTTGTGGTGAAGAGCTTCAATAAGGACAGGATCAAAGAAAATGTGGAAATATTTGACTGGAAGCTAAATCCTGAGGAGCTGAAAAAGATAGATCAAATCCGGCAGAATAGAGGATATCTCGCATTTGAATTCATAGCAGATCAAGGCCCTTACAAGTCTCATGAAGAGCTTTGGGATGGAGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

298

Amino Acids

34.02

Weight (kDa)

8.51

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	34 - 210	1.2e-38	Aldo/keto reductase family
Aldo_ket_red	PF00248	224 - 270	4.2e-06	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccII	CGCG	1 cut(s)	656
AciI	CCGC	2 cut(s)	559, 656
AclWI	GGATC	3 cut(s)	484, 655, 746
AcsI	RAATTY	1 cut(s)	836
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	68, 276, 626
AgsI	TTSAA	2 cut(s)	727, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	7 cut(s)	209, 221, 442, 723, 772, 787, 877
AluI	AGCT	7 cut(s)	209, 221, 442, 723, 772, 787, 877
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	3 cut(s)	484, 655, 746
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	5 cut(s)	232, 374, 445, 609, 853
ApoI	RAATTY	1 cut(s)	836
Asp700I	GAANNNNTTC	2 cut(s)	129, 722
AspS9I	GGNCC	1 cut(s)	854
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	4 cut(s)	290, 442, 715, 727
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	780
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BccI	CCATC	1 cut(s)	878
BceAI	ACGGC	2 cut(s)	96, 186
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	3 cut(s)	35, 74, 443
BfmI	CTRYAG	2 cut(s)	396, 525
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme1390I	CCNGG	2 cut(s)	247, 248
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	854
BmrFI	CCNGG	2 cut(s)	247, 248
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	810, 842
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	2 cut(s)	246, 641
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 276, 626
Bse1I	ACTGG	2 cut(s)	551, 770
Bse21I	CCTNAGG	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	246, 641
BseGI	GGATG	2 cut(s)	256, 889
BseLI	CCNNNNNNNGG	3 cut(s)	68, 276, 626
BseMII	CTCAG	3 cut(s)	148, 180, 771
BseNI	ACTGG	2 cut(s)	551, 770
BseRI	GAGGAG	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	5 cut(s)	234, 376, 447, 611, 855
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	62, 247, 808
BslI	CCNNNNNNNGG	3 cut(s)	68, 276, 626
BsmAI	GTCTC	1 cut(s)	870
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	5 cut(s)	234, 376, 447, 611, 855
BsoBI	CYCGRG	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	489, 647, 738, 799, 847
BspACI	CCGC	2 cut(s)	559, 656
BspANI	GGCC	5 cut(s)	234, 376, 447, 611, 855
BspCNI	CTCAG	3 cut(s)	147, 181, 772
BspFNI	CGCG	1 cut(s)	656
BspHI	TCATGA	1 cut(s)	868
BspMAI	CTGCAG	1 cut(s)	529
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	3 cut(s)	484, 655, 746
BspQI	GCTCTTC	2 cut(s)	713, 867
BsrI	ACTGG	2 cut(s)	551, 770
BssECI	CCNNGG	2 cut(s)	246, 641
BssMI	GATC	5 cut(s)	489, 647, 738, 799, 847
BssT1I	CCWWGG	1 cut(s)	641
Bst4CI	ACNGT	2 cut(s)	56, 302
Bst6I	CTCTTC	2 cut(s)	713, 867
BstC8I	GCNNGC	2 cut(s)	36, 504
BstDEI	CTNAG	4 cut(s)	134, 189, 338, 780
BstF5I	GGATG	2 cut(s)	256, 889
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	5 cut(s)	492, 650, 741, 802, 850
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	5 cut(s)	489, 647, 738, 799, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 694
BstSCI	CCNGG	2 cut(s)	245, 246
BstSFI	CTRYAG	2 cut(s)	396, 525
BstUI	CGCG	1 cut(s)	656
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	5 cut(s)	234, 376, 447, 611, 855
BtsCI	GGATG	2 cut(s)	256, 889
BtsI	GCAGTG	3 cut(s)	29, 180, 507
BtsIMutI	CAGTG	4 cut(s)	29, 142, 180, 507
Cac8I	GCNNGC	2 cut(s)	36, 504
CciI	TCATGA	1 cut(s)	868
Cfr13I	GGNCC	1 cut(s)	854
Cfr9I	CCCGGG	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	3 cut(s)	424, 480, 869
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	134, 189, 338, 780
DpnI	GATC	5 cut(s)	491, 649, 740, 801, 849
DpnII	GATC	5 cut(s)	489, 647, 738, 799, 847
Eam1104I	CTCTTC	2 cut(s)	713, 867
EarI	CTCTTC	2 cut(s)	713, 867
Eco130I	CCWWGG	1 cut(s)	641
Eco147I	AGGCCT	2 cut(s)	447, 611
Eco32I	GATATC	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRI	GAATTC	1 cut(s)	836
EcoRV	GATATC	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	641
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	3 cut(s)	427, 483, 872
FatI	CATG	3 cut(s)	423, 479, 868
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	3 cut(s)	35, 74, 443
GluI	GCNGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	5 cut(s)	234, 376, 447, 611, 855
HapII	CCGG	3 cut(s)	62, 247, 808
Hin1II	CATG	3 cut(s)	427, 483, 872
HinfI	GANTC	4 cut(s)	334, 367, 465, 547
HpaII	CCGG	3 cut(s)	62, 247, 808
HphI	GGTGA	4 cut(s)	290, 442, 715, 727
Hpy188I	TCNGA	4 cut(s)	106, 321, 366, 438
Hpy188III	TCNNGA	4 cut(s)	20, 331, 779, 869
HpyCH4III	ACNGT	2 cut(s)	56, 302
HpyCH4V	TGCA	6 cut(s)	67, 140, 290, 471, 483, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 694
HpyF3I	CTNAG	4 cut(s)	134, 189, 338, 780
Hsp92II	CATG	3 cut(s)	427, 483, 872
Kzo9I	GATC	5 cut(s)	489, 647, 738, 799, 847
LguI	GCTCTTC	2 cut(s)	713, 867
LmnI	GCTCC	1 cut(s)	784
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	35, 74, 443
MaeIII	GTNAC	3 cut(s)	50, 152, 262
MalI	GATC	5 cut(s)	491, 649, 740, 801, 849
MboI	GATC	5 cut(s)	489, 647, 738, 799, 847
MboII	GAAGA	4 cut(s)	383, 577, 730, 884
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	5 cut(s)	147, 472, 578, 600, 836
MlyI	GAGTC	1 cut(s)	474
MroXI	GAANNNNTTC	2 cut(s)	129, 722
MseI	TTAA	3 cut(s)	354, 405, 895
MspI	CCGG	3 cut(s)	62, 247, 808
MspR9I	CCNGG	2 cut(s)	247, 248
Mva1269I	GAATGC	1 cut(s)	15
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	382, 694
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	5 cut(s)	489, 647, 738, 799, 847
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	427, 483, 872
PagI	TCATGA	1 cut(s)	868
PceI	AGGCCT	2 cut(s)	447, 611
PciSI	GCTCTTC	2 cut(s)	713, 867
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	2 cut(s)	129, 722
PfeI	GAWTC	3 cut(s)	334, 367, 547
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SapI	GCTCTTC	2 cut(s)	713, 867
SaqAI	TTAA	3 cut(s)	354, 405, 895
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	5 cut(s)	489, 647, 738, 799, 847
Sau96I	GGNCC	1 cut(s)	854
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	2 cut(s)	247, 248
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	396, 525
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	147, 472, 578, 600, 836
SseBI	AGGCCT	2 cut(s)	447, 611
SsiI	CCGC	2 cut(s)	559, 656
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	3 cut(s)	35, 74, 443
StuI	AGGCCT	2 cut(s)	447, 611
StyD4I	CCNGG	2 cut(s)	245, 246
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	2 cut(s)	56, 302
TasI	AATT	5 cut(s)	147, 472, 578, 600, 836
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	3 cut(s)	334, 367, 547
Tru1I	TTAA	3 cut(s)	354, 405, 895
Tru9I	TTAA	3 cut(s)	354, 405, 895
TscAI	CASTG	4 cut(s)	36, 142, 180, 514
TspDTI	ATGAA	7 cut(s)	267, 359, 440, 468, 560, 829, 885
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	4 cut(s)	36, 142, 180, 514
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	836
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	129, 722
XspI	CTAG	3 cut(s)	35, 74, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.