Rorug01G0078500

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
12797977 .. 12798344
368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0078500.1

Sequence Viewer

Length: 207 bp
ATGGAGGATCATGGCACCAAGGAGCATATGAGGGGGTTATATGTTGCACAGGATGATAGGTATGTGGAGGATACGGGTGCGGAAGTTGGACTGAAACCAGGTCCTGTCTCCATGGATGATGGAAATGTTCGAAAGGAGGAAGATAATTTCTCATTCAAGAGAAATCTTTCACTCACTGAGTGGCTAACCATGTTCAGTGAATATTAG

Protein Analysis

68

Amino Acids

7.87

Weight (kDa)

4.58

Isoelectric Point (pI)

18.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 15
AdeI CACNNNGTG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 101
AsuII TTCGAA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 14
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 18, 111
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 18, 111
BseGI GGATG 2 cut(s) 58, 121
BseMII CTCAG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 18, 111
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 2 cut(s) 18, 111
Bst2UI CCWGG 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 58, 121
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 7
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BsuI GTATCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 58, 121
BtsIMutI CAGTG 2 cut(s) 174, 202
CaiI CAGNNNCTG 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 97
CviAII CATG 3 cut(s) 11, 112, 190
CviJI RGCY 1 cut(s) 184
CviKI_1 RGCY 1 cut(s) 184
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraIII CACNNNGTG 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 18, 111
Eco47I GGWCC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 18, 111
ErhI CCWWGG 2 cut(s) 18, 111
FaeI CATG 3 cut(s) 14, 115, 193
FaiI YATR 8 cut(s) 12, 27, 29, 40, 42, 63, 113, 191
FatI CATG 3 cut(s) 10, 111, 189
FauNDI CATATG 1 cut(s) 27
FokI GGATG 2 cut(s) 65, 128
Hin1II CATG 3 cut(s) 14, 115, 193
Hpy188III TCNNGA 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 3 cut(s) 14, 115, 193
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 35, 84, 111, 117
MabI ACCWGGT 1 cut(s) 97
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 152
MluCI AATT 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 3 cut(s) 24, 61, 130
MroXI GAANNNNTTC 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 27
NdeII GATC 1 cut(s) 7
NlaIII CATG 3 cut(s) 14, 115, 193
NlaIV GGNNCC 1 cut(s) 16
NspV TTCGAA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 101
PspPPI RGGWCCY 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 104
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 99
SetI ASST 2 cut(s) 62, 103
SexAI ACCWGGT 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 130
SinI GGWCC 1 cut(s) 101
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 2 cut(s) 18, 111
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 145
TscAI CASTG 2 cut(s) 181, 202
TspRI CASTG 2 cut(s) 181, 202
VpaK11BI GGWCC 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.