Rw3G022750

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000205
Physical Location & Seq
Forward (+)
28075234 .. 28076411
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022750.1

Sequence Viewer

Length: 930 bp
ATGATGGCAGCAACCAAAATCCCAGAGGTGGTGTTAGGCTCCTCCAGTGGCCAAAGGACCATGCCTGTGCTCGGCTTTGGCACAGCAACTGACTGCTTGGACCCGAATGCTTTGAAGACTGCGGTTCTTGAAGCCATAAAGCTGGGTTACAGACACTTCGACACCGCTTCCATATACACCTCAGAGCAGACTCTAGGTGAAGCCGTGGCCGAAGCTATTAGCCTCGGTCTTATTGCCTCTAGAGACCAAGTGTTCATCACTTCAAAGCTGTGGTGTAATGATGCTCATCCAGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCAGAATCTTCAAATGGAGTACCTTGATCTGTATCTTATTCACTGGCCCATAAGTGGTAAGCCAGGGAAATTAGTGTACCCGCTAACCGAAGAGGACCTTGTGCCATTGGACTTGAAGGGCGTGTGGGCAGCCATGGAGGAGTCACAGAGACTTGGCCTCACCAAATCCATAGGAGTCAGCAATTTCTCTTCCAAAAAGACTGAAAATCTGCTCTCTTTTGCTACTATTCCTCCTTCTGTCAATCAAGTGGAGATGAGCCCATTTTGGCAACAAAAGAAGCTGAGAGACTTCTGCAAGGCTAATGGTGTAGTTGTGACAGCCTACTCCCCATTGGGTGGCAGTGGGACAAGTTGGGGAAGCAATCATGTTCTGGAGAGCAAAGTTTGTATTAGGTGGGTGTACCAAACAGGGACAACAGTTGCAGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTTGACTGGGAACTATCAGAAGAGGACCTAGACAAGATCAATCAGATCCCACAGCACAAGATGATGCTTAGAGAAGAGTATGTTTCGGCGCATGGACCGTACAAGTCCCTTGAAGAATTCTGGGATGGAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

309

Amino Acids

34.43

Weight (kDa)

5.61

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 25 - 222 3.5e-44 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 778
Acc36I ACCTGC 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 659
AciI CCGC 3 cut(s) 122, 165, 404
AclWI GGATC 1 cut(s) 832
AcoI YGGCCR 2 cut(s) 49, 207
AcsI RAATTY 1 cut(s) 908
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 4 cut(s) 344, 401, 725, 893
AfiI CCNNNNNNNGG 4 cut(s) 28, 71, 377, 659
AgsI TTSAA 7 cut(s) 115, 131, 264, 335, 439, 775, 905
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 6 cut(s) 142, 215, 268, 604, 756, 925
AluI AGCT 6 cut(s) 142, 215, 268, 604, 756, 925
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 3 cut(s) 237, 466, 603
AlwI GGATC 1 cut(s) 832
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 4 cut(s) 49, 207, 368, 478
ApeKI GCWGC 2 cut(s) 8, 452
ApoI RAATTY 1 cut(s) 908
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 6 cut(s) 57, 100, 369, 418, 817, 887
AsuHPI GGTGA 2 cut(s) 209, 475
AvaII GGWCC 5 cut(s) 57, 100, 418, 817, 887
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 20, 464
BccI CCATC 1 cut(s) 911
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 237, 466, 603
BfaI CTAG 3 cut(s) 194, 240, 821
BfuAI ACCTGC 1 cut(s) 778
BisI GCNGC 2 cut(s) 9, 453
BlsI GCNGC 2 cut(s) 10, 454
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 5 cut(s) 57, 100, 418, 817, 887
BmgT120I GGNCC 6 cut(s) 57, 100, 369, 418, 817, 887
BmiI GGNNCC 2 cut(s) 40, 102
BmrFI CCNGG 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 2 cut(s) 271, 846
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 2 cut(s) 28, 716
BsaBI GATNNNNATC 2 cut(s) 285, 354
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 204, 223, 386, 456
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 71, 377, 659
Bse1I ACTGG 3 cut(s) 45, 371, 803
Bse8I GATNNNNATC 2 cut(s) 285, 354
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 4 cut(s) 204, 223, 386, 456
BseGI GGATG 2 cut(s) 286, 922
BseJI GATNNNNATC 2 cut(s) 285, 354
BseLI CCNNNNNNNGG 4 cut(s) 28, 71, 377, 659
BseMII CTCAG 2 cut(s) 195, 596
BseNI ACTGG 3 cut(s) 45, 371, 803
BseRI GAGGAG 2 cut(s) 31, 476
BseXI GCAGC 2 cut(s) 20, 464
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 806
BshFI GGCC 4 cut(s) 51, 209, 370, 480
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 3 cut(s) 682, 748, 883
BslI CCNNNNNNNGG 4 cut(s) 28, 71, 377, 659
BsmAI GTCTC 3 cut(s) 237, 466, 603
BsmFI GGGAC 3 cut(s) 682, 748, 883
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 4 cut(s) 51, 209, 370, 480
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 72, 584
Bsp143I GATC 3 cut(s) 349, 828, 837
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 3 cut(s) 122, 165, 404
BspANI GGCC 4 cut(s) 51, 209, 370, 480
BspCNI CTCAG 2 cut(s) 194, 597
BspLI GGNNCC 2 cut(s) 40, 102
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 1 cut(s) 832
BspTNI GGTCTC 1 cut(s) 237
BsrI ACTGG 3 cut(s) 45, 371, 803
BssECI CCNNGG 4 cut(s) 204, 223, 386, 456
BssMI GATC 3 cut(s) 349, 828, 837
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 742, 891
Bst6I CTCTTC 4 cut(s) 408, 517, 807, 861
BstAPI GCANNNNNTGC 1 cut(s) 784
BstDEI CTNAG 3 cut(s) 181, 605, 860
BstDSI CCRYGG 2 cut(s) 204, 456
BstF5I GGATG 2 cut(s) 286, 922
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 3 cut(s) 352, 831, 840
BstMAI GTCTC 3 cut(s) 237, 466, 603
BstMBI GATC 3 cut(s) 349, 828, 837
BstMWI GCNNNNNNNGC 1 cut(s) 784
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 20, 464
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 837
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 1 cut(s) 837
BsuRI GGCC 4 cut(s) 51, 209, 370, 480
BtgI CCRYGG 2 cut(s) 204, 456
BtsCI GGATG 2 cut(s) 286, 922
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 3 cut(s) 52, 364, 670
BveI ACCTGC 1 cut(s) 778
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 1 cut(s) 883
Cfr13I GGNCC 6 cut(s) 57, 100, 369, 418, 817, 887
Csp6I GTAC 4 cut(s) 343, 400, 724, 892
CviAII CATG 4 cut(s) 61, 457, 689, 884
CviQI GTAC 4 cut(s) 343, 400, 724, 892
DdeI CTNAG 3 cut(s) 181, 605, 860
DpnI GATC 3 cut(s) 351, 830, 839
DpnII GATC 3 cut(s) 349, 828, 837
EaeI YGGCCR 2 cut(s) 49, 207
Eam1104I CTCTTC 4 cut(s) 408, 517, 807, 861
EarI CTCTTC 4 cut(s) 408, 517, 807, 861
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 5 cut(s) 57, 100, 418, 817, 887
Eco57I CTGAAG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 418, 817
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 4 cut(s) 64, 460, 692, 887
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 3 cut(s) 682, 748, 883
FatI CATG 4 cut(s) 60, 456, 688, 883
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 9, 453
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 2 cut(s) 9, 453
FspBI CTAG 3 cut(s) 194, 240, 821
GlaI GCGC 1 cut(s) 882
GluI GCNGC 2 cut(s) 9, 453
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 28, 716
HaeIII GGCC 4 cut(s) 51, 209, 370, 480
HhaI GCGC 1 cut(s) 883
Hin1II CATG 4 cut(s) 64, 460, 692, 887
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HinfI GANTC 4 cut(s) 190, 328, 464, 498
HphI GGTGA 2 cut(s) 209, 475
Hpy166II GTNNAC 2 cut(s) 400, 724
Hpy188I TCNGA 4 cut(s) 184, 327, 811, 837
Hpy188III TCNNGA 4 cut(s) 128, 240, 290, 695
Hpy8I GTNNAC 2 cut(s) 400, 724
HpyAV CCTTC 2 cut(s) 433, 567
HpyCH4III ACNGT 2 cut(s) 742, 891
HpyCH4V TGCA 3 cut(s) 618, 746, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 784
HpyF3I CTNAG 3 cut(s) 181, 605, 860
Hsp92II CATG 4 cut(s) 64, 460, 692, 887
HspAI GCGC 1 cut(s) 881
Kzo9I GATC 3 cut(s) 349, 828, 837
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 20, 464
LweI GCATC 2 cut(s) 271, 846
MaeI CTAG 3 cut(s) 194, 240, 821
MaeIII GTNAC 3 cut(s) 146, 465, 637
MalI GATC 3 cut(s) 351, 830, 839
MboI GATC 3 cut(s) 349, 828, 837
MboII GAAGA 7 cut(s) 127, 323, 425, 504, 824, 878, 917
MflI RGATCY 1 cut(s) 837
MhlI GDGCHC 2 cut(s) 72, 584
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 3 cut(s) 392, 505, 908
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 3 cut(s) 184, 473, 507
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 750, 928
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 784
NcoI CCATGG 1 cut(s) 456
NdeII GATC 3 cut(s) 349, 828, 837
NlaIII CATG 4 cut(s) 64, 460, 692, 887
NlaIV GGNNCC 2 cut(s) 40, 102
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 465, 637
PaqCI CACCTGC 1 cut(s) 778
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 2 cut(s) 10, 454
PleI GAGTC 3 cut(s) 184, 472, 506
PpsI GAGTC 3 cut(s) 184, 472, 506
PpuMI RGGWCCY 2 cut(s) 418, 817
Psp5II RGGWCCY 2 cut(s) 418, 817
Psp6I CCWGG 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 40, 102
PspPI GGNCC 6 cut(s) 57, 100, 369, 418, 817, 887
PspPPI RGGWCCY 2 cut(s) 418, 817
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 837
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 4 cut(s) 344, 401, 725, 893
RsaNI GTAC 4 cut(s) 343, 400, 724, 892
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 750, 928
SatI GCNGC 2 cut(s) 9, 453
Sau3AI GATC 3 cut(s) 349, 828, 837
Sau96I GGNCC 6 cut(s) 57, 100, 369, 418, 817, 887
SchI GAGTC 3 cut(s) 184, 473, 507
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 2 cut(s) 72, 584
SfaNI GCATC 2 cut(s) 271, 846
SinI GGWCC 5 cut(s) 57, 100, 418, 817, 887
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 3 cut(s) 392, 505, 908
SsiI CCGC 3 cut(s) 122, 165, 404
SspMI CTAG 3 cut(s) 194, 240, 821
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 742, 891
TaqI TCGA 1 cut(s) 159
TaqII GACCGA 1 cut(s) 215
TasI AATT 3 cut(s) 392, 505, 908
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 750, 928
Tru9I TTAA 2 cut(s) 750, 928
TscAI CASTG 3 cut(s) 52, 371, 670
TseFI GTSAC 2 cut(s) 465, 637
TseI GCWGC 2 cut(s) 8, 452
Tsp45I GTSAC 2 cut(s) 465, 637
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 3 cut(s) 52, 371, 670
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 5 cut(s) 57, 100, 418, 817, 887
XapI RAATTY 1 cut(s) 908
XbaI TCTAGA 1 cut(s) 239
XspI CTAG 3 cut(s) 194, 240, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.