Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

13335652 .. 13337455

Gene Structure 1804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20300.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGAACAAGATTGGCAAGAGTGGAAGGTGTTTCATCATCATCAACTGGCAAAACAATCAAGATTCCTGTTCTGGGTTTAGGAACTGCAGCATATCCTTTTGTTGCCTCTCAAACAGCCAAAGAAGCCATTCTGAATGCAATCCAAGTTGGCTACAGACATTTTGATACCGCTGCTGTTTACCAGACGGAGCCAGTTCTCGGTGAAGCCATCGCCGAAGCTCTTTCGCTTGGCCTCGTCGAATCCCGGGATGAGCTTTTCGTTACTTCCAAGCTTTGGTGCCCCGATGCACATCCTCACCTTGTCCTCCCTGCCATTCACAAAACGCTCAAGAATCTTGGATTAGAATACCTAGATTTGTATCTCATTCACTATCCGGTGAGTTTGGAGCCAGGAAGCTATGACATACCAGTTAGGAAAGAGCATCTTCTTCCTATGGACTTGAAGTCTGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGTCCATAGGAATCAGCAATTTCACATGCAAAAAGATCGATATGTTGCTTGCCACTGCAAAAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCGCTATGGCAGCAGAAAAGGCTGAGAGAGTTTTGTGAAAGAAAAGGTATAATCATCACTGCCTACTCTCCGTTGGGAGCAAGAGGGACACCGTGGGGATCAAATGGAGTGATGGAATGTGAGACTCTCAAACAGATTGCTGAAGCAAAAGGAAAAACTCTTGCTCAGGTTTGTCTGAGATGGGCATATGAGCAAGGGGTGAGTGTGGTGGTGAAGAGCTTTAACAAGGAGAGGATCAAAGAAAATATGGATATATTTGATTGGGAGCTGCTGCCTGAGGAACTGGACAAGATCGATCTGATTCCACAAAAGAGAGGATGCCTCTCAACCGACTTCGTTTCAGAACATCATGGCCCTTTCAAGTCTCTTGAAGAGCTTTGGGATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

327

Amino Acids

36.39

Weight (kDa)

5.84

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	25 - 300	1.1e-53	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	2 cut(s)	171, 590
AclWI	GGATC	2 cut(s)	694, 830
AcuI	CTGAAG	1 cut(s)	750
AfiI	CCNNNNNNNGG	3 cut(s)	74, 200, 276
AgsI	TTSAA	3 cut(s)	445, 949, 959
AhdI	GACNNNNNGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	8 cut(s)	221, 256, 274, 399, 481, 807, 856, 964
AluI	AGCT	8 cut(s)	221, 256, 274, 399, 481, 807, 856, 964
Alw26I	GTCTC	2 cut(s)	704, 957
AlwI	GGATC	2 cut(s)	694, 830
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	3 cut(s)	232, 484, 940
ApeKI	GCWGC	5 cut(s)	89, 173, 598, 856, 859
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	941
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	6 cut(s)	215, 290, 391, 481, 799, 811
AvaI	CYCGRG	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	864
BaeGI	GKGCMC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	101, 160, 610, 843, 846
BccI	CCATC	4 cut(s)	218, 694, 762, 965
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	2 cut(s)	704, 957
BfaI	CTAG	2 cut(s)	353, 482
BfmI	CTRYAG	3 cut(s)	87, 154, 564
BisI	GCNGC	5 cut(s)	90, 174, 599, 857, 860
BlsI	GCNGC	5 cut(s)	91, 175, 600, 858, 861
Bme1390I	CCNGG	3 cut(s)	247, 248, 393
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	3 cut(s)	192, 281, 390
BmrFI	CCNGG	3 cut(s)	247, 248, 393
BmsI	GCATC	3 cut(s)	277, 433, 896
BplI	GAGNNNNNCTC	2 cut(s)	894, 926
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	247, 248
Bsa29I	ATCGAT	2 cut(s)	531, 882
BsaBI	GATNNNNATC	2 cut(s)	291, 360
BsaJI	CCNNGG	2 cut(s)	246, 680
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 200, 276
Bse1I	ACTGG	4 cut(s)	52, 194, 410, 876
Bse21I	CCTNAGG	1 cut(s)	864
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	2 cut(s)	291, 360
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	2 cut(s)	531, 882
BseDI	CCNNGG	2 cut(s)	246, 680
BseGI	GGATG	4 cut(s)	256, 292, 911, 976
BseJI	GATNNNNATC	2 cut(s)	291, 360
BseLI	CCNNNNNNNGG	3 cut(s)	74, 200, 276
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	602, 755, 767, 855
BseNI	ACTGG	4 cut(s)	52, 194, 410, 876
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	101, 160, 610, 843, 846
BshFI	GGCC	3 cut(s)	234, 486, 942
BshNI	GGYRCC	1 cut(s)	279
BshVI	ATCGAT	2 cut(s)	531, 882
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	247, 377
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	3 cut(s)	74, 200, 276
BsmAI	GTCTC	2 cut(s)	704, 957
BsmFI	GGGAC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	234, 486, 942
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	528, 686, 822, 879, 883
BspACI	CCGC	2 cut(s)	171, 590
BspANI	GGCC	3 cut(s)	234, 486, 942
BspCNI	CTCAG	4 cut(s)	603, 756, 766, 856
BspDI	ATCGAT	2 cut(s)	531, 882
BspLI	GGNNCC	3 cut(s)	192, 281, 390
BspMAI	CTGCAG	2 cut(s)	91, 568
BspPI	GGATC	2 cut(s)	694, 830
BspQI	GCTCTTC	2 cut(s)	797, 954
BspT107I	GGYRCC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	4 cut(s)	52, 194, 410, 876
BssECI	CCNNGG	2 cut(s)	246, 680
BssMI	GATC	5 cut(s)	528, 686, 822, 879, 883
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	681
Bst6I	CTCTTC	3 cut(s)	462, 797, 954
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	611, 753, 764, 864
BstDSI	CCRYGG	1 cut(s)	680
BstF5I	GGATG	4 cut(s)	256, 292, 911, 976
BstKTI	GATC	5 cut(s)	531, 689, 825, 882, 886
BstMAI	GTCTC	2 cut(s)	704, 957
BstMBI	GATC	5 cut(s)	528, 686, 822, 879, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 598, 607
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	245, 246, 391
BstSFI	CTRYAG	3 cut(s)	87, 154, 564
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	5 cut(s)	101, 160, 610, 843, 846
Bsu15I	ATCGAT	2 cut(s)	531, 882
Bsu36I	CCTNAGG	1 cut(s)	864
BsuRI	GGCC	3 cut(s)	234, 486, 942
BsuTUI	ATCGAT	2 cut(s)	531, 882
BtgI	CCRYGG	1 cut(s)	680
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	256, 292, 911, 976
BtsI	GCAGTG	2 cut(s)	546, 645
BtsIMutI	CAGTG	2 cut(s)	546, 645
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	941
Cfr9I	CCCGGG	1 cut(s)	246
ClaI	ATCGAT	2 cut(s)	531, 882
CviAII	CATG	2 cut(s)	519, 938
DdeI	CTNAG	4 cut(s)	611, 753, 764, 864
DpnI	GATC	5 cut(s)	530, 688, 824, 881, 885
DpnII	GATC	5 cut(s)	528, 686, 822, 879, 883
DriI	GACNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	3 cut(s)	462, 797, 954
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EarI	CTCTTC	3 cut(s)	462, 797, 954
Eco147I	AGGCCT	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	750
Eco81I	CCTNAGG	1 cut(s)	864
Eco88I	CYCGRG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	522, 941
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	2 cut(s)	518, 937
FauI	CCCGC	1 cut(s)	597
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	5 cut(s)	90, 174, 599, 857, 860
FokI	GGATG	3 cut(s)	263, 279, 918
Fsp4HI	GCNGC	5 cut(s)	90, 174, 599, 857, 860
FspBI	CTAG	2 cut(s)	353, 482
GluI	GCNGC	5 cut(s)	90, 174, 599, 857, 860
HaeIII	GGCC	3 cut(s)	234, 486, 942
HapII	CCGG	2 cut(s)	247, 377
Hin1II	CATG	2 cut(s)	522, 941
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	6 cut(s)	64, 242, 334, 504, 712, 889
HpaII	CCGG	2 cut(s)	247, 377
HphI	GGTGA	6 cut(s)	215, 290, 391, 481, 799, 811
Hpy166II	GTNNAC	2 cut(s)	181, 571
Hpy188I	TCNGA	4 cut(s)	135, 765, 888, 931
Hpy188III	TCNNGA	3 cut(s)	61, 331, 956
Hpy8I	GTNNAC	2 cut(s)	181, 571
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	681
HpyCH4V	TGCA	6 cut(s)	89, 140, 290, 522, 551, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 598, 607
HpyF3I	CTNAG	4 cut(s)	611, 753, 764, 864
Hsp92II	CATG	2 cut(s)	522, 941
Kzo9I	GATC	5 cut(s)	528, 686, 822, 879, 883
LguI	GCTCTTC	2 cut(s)	797, 954
LmnI	GCTCC	4 cut(s)	190, 388, 665, 853
Lsp1109I	GCAGC	5 cut(s)	101, 160, 610, 843, 846
LweI	GCATC	3 cut(s)	277, 433, 896
MaeI	CTAG	2 cut(s)	353, 482
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	5 cut(s)	530, 688, 824, 881, 885
MboI	GATC	5 cut(s)	528, 686, 822, 879, 883
MboII	GAAGA	5 cut(s)	419, 422, 479, 814, 971
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	511
MlyI	GAGTC	1 cut(s)	706
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	810
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	247, 377
MspR9I	CCNGG	3 cut(s)	247, 248, 393
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	125, 598, 607
NciI	CCSGG	2 cut(s)	247, 248
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	5 cut(s)	528, 686, 822, 879, 883
NlaIII	CATG	2 cut(s)	522, 941
NlaIV	GGNNCC	3 cut(s)	192, 281, 390
NspI	RCATGY	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	486
PciSI	GCTCTTC	2 cut(s)	797, 954
PctI	GAATGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	5 cut(s)	64, 242, 334, 504, 889
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	91, 175, 600, 858, 861
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	192, 281, 390
PspPI	GGNCC	1 cut(s)	941
PstI	CTGCAG	2 cut(s)	91, 568
SapI	GCTCTTC	2 cut(s)	797, 954
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	5 cut(s)	90, 174, 599, 857, 860
Sau3AI	GATC	5 cut(s)	528, 686, 822, 879, 883
Sau96I	GGNCC	1 cut(s)	941
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	247, 248, 393
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	3 cut(s)	277, 433, 896
SfcI	CTRYAG	3 cut(s)	87, 154, 564
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	511
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	171, 590
SspMI	CTAG	2 cut(s)	353, 482
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	245, 246, 391
TaaI	ACNGT	1 cut(s)	681
TaqI	TCGA	3 cut(s)	240, 531, 882
TasI	AATT	1 cut(s)	511
TfiI	GAWTC	5 cut(s)	64, 242, 334, 504, 889
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	2 cut(s)	553, 652
TseI	GCWGC	5 cut(s)	89, 173, 598, 856, 859
TspDTI	ATGAA	2 cut(s)	24, 599
TspGWI	ACGGA	2 cut(s)	203, 648
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	553, 652
Van91I	CCANNNNNTGG	1 cut(s)	276
XceI	RCATGY	1 cut(s)	522
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	353, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.