pycom16g08620

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000205
Physical Location & Seq
Reverse (-)
5759592 .. 5759858
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08620.1

Sequence Viewer

Length: 267 bp
ATGGCAGCAGCAACCCAAATCCCGGAAGTAGTGCTCGACTCCTCCGCCGGCCCCAAGAGCATGCCCATCCTCGCCTTCGGCACAGCGGCCGACAACATACAGCCTGACGGTTTGAAAACGGCGGTGATTGAGGCCATCAAGCTAGGCTACAGGCATTTTGATACAGCTTCCATATATGGCTCCGAGCAGACTCTTGGTGACGCCATTAAAGAAGCTTTAGAACTTGGCCTTGTTGATTCCAGAGACAAACTCTTCATTGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

89

Amino Acids

9.36

Weight (kDa)

4.61

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 26 - 86 1.5e-08 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 45, 86, 122
AcoI YGGCCR 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 115, 260
AluBI AGCT 3 cut(s) 142, 167, 215
AluI AGCT 3 cut(s) 142, 167, 215
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 237
AoxI GGCC 4 cut(s) 49, 87, 132, 226
ApeKI GCWGC 2 cut(s) 5, 8
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 136, 209
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 17, 20
BccI CCATC 2 cut(s) 74, 143
BceAI ACGGC 1 cut(s) 135
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 3 cut(s) 6, 9, 87
BlsI GCNGC 3 cut(s) 7, 10, 88
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 52, 181
BmrFI CCNGG 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpuMI CCSGG 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 47
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 31
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 17, 20
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 51, 89, 134, 228
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 23, 48
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 4 cut(s) 51, 89, 134, 228
Bsp1286I GDGCHC 1 cut(s) 36
BspACI CCGC 3 cut(s) 45, 86, 122
BspANI GGCC 4 cut(s) 51, 89, 134, 228
BspLI GGNNCC 2 cut(s) 52, 181
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssNI GRCGYC 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 49, 62
BstF5I GGATG 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 17, 20
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 4 cut(s) 51, 89, 134, 228
BtsCI GGATG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 49, 62
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 209
CviAII CATG 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 87
Eco52I CGGCCG 1 cut(s) 87
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 62, 98, 173, 175, 177
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 6, 9, 87
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 6, 9, 87
FspBI CTAG 1 cut(s) 143
GluI GCNGC 3 cut(s) 6, 9, 87
HaeIII GGCC 4 cut(s) 51, 89, 134, 228
HapII CCGG 2 cut(s) 23, 48
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 3 cut(s) 38, 190, 236
HpaII CCGG 2 cut(s) 23, 48
HphI GGTGA 2 cut(s) 136, 209
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 1 cut(s) 64
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 5 cut(s) 36, 61, 117, 136, 253
Lsp1109I GCAGC 2 cut(s) 17, 20
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 36
MlyI GAGTC 2 cut(s) 32, 184
MnlI CCTC 3 cut(s) 52, 80, 124
MroNI GCCGGC 1 cut(s) 47
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 23, 48
MspR9I CCNGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 57
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 1 cut(s) 23
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 52, 181
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 64
PaeI GCATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 3 cut(s) 7, 10, 88
PleI GAGTC 2 cut(s) 32, 184
PpsI GAGTC 2 cut(s) 32, 184
PspN4I GGNNCC 2 cut(s) 52, 181
PspPI GGNCC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 3 cut(s) 6, 9, 87
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 32, 184
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 36
SetI ASST 3 cut(s) 144, 169, 217
SfcI CTRYAG 1 cut(s) 148
SphI GCATGC 1 cut(s) 64
SsiI CCGC 3 cut(s) 45, 86, 122
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 36
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 244
XceI RCATGY 1 cut(s) 64
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.