Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

76750748 .. 76758491

Gene Structure 7744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG446800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGAAGCTTGCCAGTAGCCGAAAATGTCTTATCACGTTCCATCAACATTCCAGTGTTGCCACTAGTTTCATCATCAACTGGAAAAACAAGCAACATTCCTGTTCTAGGTTTCGGAACTGCTACATACCCTTTTGTTGGCTCAGAAATCATAAAAGAAGCCATTCTCGATGCGATCAGAGTTGGCTACAGACATTTTGACACAGCCGCTCTTTACCAGACGGAGCAGAGTCTCGGTGAAGCCATTTCGGAAGCTCTTTCTCTTGGCCTCATCGAATCCCGGCAAGACCTCTTCATCACTTCCAAGCTGTGGTGCAGTACTGATGCTCACCCCCACCGTGTCTTACCTGCCATTCGCACTACGCTCAAATCGAGTAAGAAGAGAAAACCAGAGAGGGTGAGAGATCAGCGATTCATTTTCAGTACGGAAGTATCGTCTCTGCCATCATTTCATACGATGTCCTACTCTAGAAGGTCAAGGTACTCCCCCTCTCCTTCCCCGAAGCGATACAGGTCACCGTCTCCTTCTCCAAGGCGATACAGATACAGGTCCCTTTCCAGGTCTGTTTCGAGGTCAAGGTCCAGGTCGAGGAGTCCATCTGTGGAGAATCCTGGCAACAATTTGTATGTGACTGGATTGTCACCTCGGATTACAAGGAGAGAGCTTGAGAAGCACTTTGCATCAGAGGGAAAAGTATGTGTTCGGAGTGCCCTTTTCTATCTTCATTTGTATCTTCTTCATATTGTAATGATTGTGGTTCAGTTTAGTTTGATATTTGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

261

Amino Acids

29.45

Weight (kDa)

10.52

Isoelectric Point (pI)

79.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	36 - 124	8.3e-09	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	1 cut(s)	207
AfaI	GTAC	3 cut(s)	319, 424, 482
AfiI	CCNNNNNNNGG	5 cut(s)	107, 137, 309, 558, 588
AhlI	ACTAGT	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	557, 581, 610
AluBI	AGCT	4 cut(s)	9, 254, 307, 664
AluI	AGCT	4 cut(s)	9, 254, 307, 664
Alw26I	GTCTC	3 cut(s)	236, 441, 525
AoxI	GGCC	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	549, 579
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	5 cut(s)	248, 320, 409, 507, 633
AvaII	GGWCC	2 cut(s)	549, 579
BaeGI	GKGCMC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BccI	CCATC	3 cut(s)	50, 451, 604
BciT130I	CCWGG	3 cut(s)	559, 583, 612
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	236, 441, 525
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	3 cut(s)	65, 107, 468
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	4 cut(s)	280, 559, 583, 612
Bme18I	GGWCC	2 cut(s)	549, 579
BmgT120I	GGNCC	2 cut(s)	549, 579
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	4 cut(s)	280, 559, 583, 612
BmsI	GCATC	3 cut(s)	160, 313, 689
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	530, 644
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 137, 309, 558, 588
Bse1I	ACTGG	4 cut(s)	14, 53, 85, 637
BseBI	CCWGG	3 cut(s)	559, 583, 612
BseDI	CCNNGG	2 cut(s)	530, 644
BseLI	CCNNNNNNNGG	5 cut(s)	107, 137, 309, 558, 588
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	4 cut(s)	14, 53, 85, 637
BseRI	GAGGAG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	5 cut(s)	107, 137, 309, 558, 588
BsmAI	GTCTC	3 cut(s)	236, 441, 525
BsmBI	CGTCTC	2 cut(s)	441, 525
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	2 cut(s)	174, 403
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	551
BspMI	ACCTGC	1 cut(s)	355
BsrBI	CCGCTC	1 cut(s)	209
BsrI	ACTGG	4 cut(s)	14, 53, 85, 637
BssECI	CCNNGG	2 cut(s)	530, 644
BssMI	GATC	2 cut(s)	174, 403
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	3 cut(s)	559, 583, 612
Bst4CI	ACNGT	2 cut(s)	338, 519
Bst6I	CTCTTC	2 cut(s)	296, 374
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	142
BstEII	GGTNACC	1 cut(s)	513
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	177, 406
BstMAI	GTCTC	3 cut(s)	236, 441, 525
BstMBI	GATC	2 cut(s)	174, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	670
BstNI	CCWGG	3 cut(s)	559, 583, 612
BstPI	GGTNACC	1 cut(s)	513
BstSCI	CCNGG	4 cut(s)	278, 557, 581, 610
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	549, 579
Csp6I	GTAC	3 cut(s)	318, 423, 481
CviQI	GTAC	3 cut(s)	318, 423, 481
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	176, 405
DpnII	GATC	2 cut(s)	174, 403
DrdI	GACNNNNNNGTC	1 cut(s)	637
DseDI	GACNNNNNNGTC	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	296, 374
EarI	CTCTTC	2 cut(s)	296, 374
Eco130I	CCWWGG	1 cut(s)	530
Eco47I	GGWCC	2 cut(s)	549, 579
Eco91I	GGTNACC	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	549
EcoO65I	GGTNACC	1 cut(s)	513
EcoRII	CCWGG	3 cut(s)	557, 581, 610
EcoT14I	CCWWGG	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	530
Esp3I	CGTCTC	2 cut(s)	441, 525
FaiI	YATR	6 cut(s)	127, 152, 453, 627, 697, 741
FaqI	GGGAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	65, 107, 468
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	5 cut(s)	229, 275, 411, 592, 607
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	5 cut(s)	248, 320, 409, 507, 633
Hpy188I	TCNGA	7 cut(s)	116, 145, 179, 250, 648, 685, 705
Hpy188III	TCNNGA	2 cut(s)	167, 468
HpyAV	CCTTC	3 cut(s)	465, 504, 534
HpyCH4III	ACNGT	2 cut(s)	338, 519
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	315, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	670
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	174, 403
LmnI	GCTCC	1 cut(s)	223
LweI	GCATC	3 cut(s)	160, 313, 689
MaeI	CTAG	3 cut(s)	65, 107, 468
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	3 cut(s)	513, 628, 639
MalI	GATC	2 cut(s)	176, 405
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	2 cut(s)	174, 403
MboII	GAAGA	5 cut(s)	283, 391, 713, 725, 728
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	1 cut(s)	619
MlyI	GAGTC	2 cut(s)	238, 601
MnlI	CCTC	8 cut(s)	278, 299, 387, 499, 564, 582, 654, 679
MroXI	GAANNNNTTC	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	4 cut(s)	280, 559, 583, 612
MvaI	CCWGG	3 cut(s)	559, 583, 612
MwoI	GCNNNNNNNGC	1 cut(s)	670
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	2 cut(s)	174, 403
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	3 cut(s)	513, 628, 639
PcsI	WCGNNNNNNNCGW	2 cut(s)	368, 431
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	275, 411, 607
PflMI	CCANNNNNTGG	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	237, 600
PpsI	GAGTC	2 cut(s)	237, 600
PpuMI	RGGWCCY	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	557, 581, 610
PspEI	GGTNACC	1 cut(s)	513
PspGI	CCWGG	3 cut(s)	557, 581, 610
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	2 cut(s)	549, 579
PspPPI	RGGWCCY	1 cut(s)	549
RsaI	GTAC	3 cut(s)	319, 424, 482
RsaNI	GTAC	3 cut(s)	318, 423, 481
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	174, 403
Sau96I	GGNCC	2 cut(s)	549, 579
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	238, 601
ScrFI	CCNGG	4 cut(s)	280, 559, 583, 612
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	3 cut(s)	160, 313, 689
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	549, 579
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	1 cut(s)	619
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	3 cut(s)	65, 107, 468
StyD4I	CCNGG	4 cut(s)	278, 557, 581, 610
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	2 cut(s)	338, 519
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	5 cut(s)	168, 273, 371, 569, 587
TasI	AATT	1 cut(s)	619
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	275, 411, 607
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	3 cut(s)	513, 628, 639
Tsp45I	GTSAC	3 cut(s)	513, 628, 639
TspDTI	ATGAA	6 cut(s)	60, 283, 403, 440, 713, 728
TspGWI	ACGGA	2 cut(s)	236, 440
TspRI	CASTG	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	549, 579
XagI	CCTNNNNNAGG	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	3 cut(s)	65, 107, 468
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.