Prupe.5G239400_v2.0.a1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000205
Physical Location & Seq
Forward (+)
18062762 .. 18064174
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G239400.1

Sequence Viewer

Length: 321 bp
ATGGACGCCATTGAGGTAGGCTACCACCATTTTGATACTGCCGCTTTCTATCAATCCGAACAAGCCATTGGTCGAGTTGTCGTCCAGGCGCTTGATCTCATCAAGAGTCGTGATGAAATCTTCATTACTTCCAAGCTATGGTGCACAGATGCCTCCCAATCTTATTCTCGCTGCCCTCAACACCACACTCAAGTAAGTACTAAGTACCACTCTCTCTCTACTACTATTACTTACTACATATTTAGAGCCTATCAACATCTGTGTATTTGTTTGTGTTTTGTGTATTCAACTTTTGAGTCTCTTTTCCGTAGATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

107

Amino Acids

12.42

Weight (kDa)

6.99

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 199, 206
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 303
Alw44I GTGCAC 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 2 cut(s) 42, 172
BlsI GCNGC 2 cut(s) 43, 173
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 42
BssMI GATC 1 cut(s) 94
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 91
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 198, 205
CviJI RGCY 4 cut(s) 21, 65, 136, 248
CviKI_1 RGCY 4 cut(s) 21, 65, 136, 248
CviQI GTAC 2 cut(s) 198, 205
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 84
FaiI YATR 2 cut(s) 139, 239
Fnu4HI GCNGC 2 cut(s) 42, 172
Fsp4HI GCNGC 2 cut(s) 42, 172
GlaI GCGC 1 cut(s) 90
GluI GCNGC 2 cut(s) 42, 172
HaeII RGCGCY 1 cut(s) 92
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 2 cut(s) 106, 296
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 103, 110
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 6
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 71, 98
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 139
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 316
MlyI GAGTC 2 cut(s) 115, 305
MnlI CCTC 3 cut(s) 7, 163, 186
MseI TTAA 2 cut(s) 314, 319
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 2 cut(s) 43, 173
PleI GAGTC 2 cut(s) 114, 304
PpsI GAGTC 2 cut(s) 114, 304
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
RsaI GTAC 2 cut(s) 199, 206
RsaNI GTAC 2 cut(s) 198, 205
SaqAI TTAA 2 cut(s) 314, 319
SatI GCNGC 2 cut(s) 42, 172
Sau3AI GATC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 2 cut(s) 115, 305
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 146
SetI ASST 2 cut(s) 18, 138
SfaNI GCATC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 1 cut(s) 316
SsiI CCGC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 316
TatI WGTACW 1 cut(s) 197
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 314, 319
Tru9I TTAA 2 cut(s) 314, 319
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 2 cut(s) 112, 129
TspGWI ACGGA 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 138
VneI GTGCAC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.