Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

10595 .. 11860

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000050.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggaaagcataagcattctggagttgccactgctagcctccccaagtagttacagtattccggtgcaaggtctaggaacggctgtatatccttttcctgcctctgaacaaagtagagaaaaagaagccattctcagcgcaatcaaaattggttacagacattttgatacggcagtggcttaccagactgagcaagttcttggtcaagctatcggcgaagctatttctcttggcctcatcaaatcccgggatgaactttttgttacttccaagcgttggtgctgtgatgcacaccctcaccgtgtcctccctgccattcagaacaccctcaagtatatatatatgaatctaagattggagtaccttaacctttatctgattcattggcctggggtgtgggaaaccatgaaagactgtcagaagctaggcctcaccaagtccattggagtctgcaatttttcatgcaaaaagatccaaaccttgcttgccactgccgaaatccctcctgcagtcaatcaagtggagatgaatccagtatggcggcagaagaagttgagagaattgtgtaagagaaaggatgcaaaaggaaaatctcttgctcaggtttgtttgaggtggctttatgagcaagtggtgagttttgtggtgaagagcttcaataaggacaggatcaaagaaaatgtggaaatatttgactggaagctaaatcctgaggagctggaaaagatagatcaaatccggcagaaaagaggatatctcgcatttgaattcatagcagatcaaggcccttacaagtctcatgaagagctttgggatggagaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

275

Amino Acids

31.62

Weight (kDa)

8.36

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	2 cut(s)	466, 677
AcsI	RAATTY	1 cut(s)	767
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	68, 276
AgsI	TTSAA	2 cut(s)	658, 767
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	7 cut(s)	209, 221, 424, 654, 703, 718, 808
AluI	AGCT	7 cut(s)	209, 221, 424, 654, 703, 718, 808
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	2 cut(s)	466, 677
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	4 cut(s)	232, 386, 427, 784
ApoI	RAATTY	1 cut(s)	767
Asp700I	GAANNNNTTC	2 cut(s)	129, 653
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	785
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	4 cut(s)	290, 424, 646, 658
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	711
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BccI	CCATC	1 cut(s)	809
BceAI	ACGGC	2 cut(s)	96, 186
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	3 cut(s)	35, 74, 425
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	3 cut(s)	247, 248, 390
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	785
BmrFI	CCNGG	3 cut(s)	247, 248, 390
BmsI	GCATC	2 cut(s)	277, 568
BmtI	GCTAGC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	2 cut(s)	246, 389
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 276
Bse1I	ACTGG	2 cut(s)	533, 701
Bse21I	CCTNAGG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	246, 389
BseGI	GGATG	3 cut(s)	256, 583, 820
BseLI	CCNNNNNNNGG	2 cut(s)	68, 276
BseMII	CTCAG	4 cut(s)	148, 180, 614, 702
BseNI	ACTGG	2 cut(s)	533, 701
BseRI	GAGGAG	1 cut(s)	728
BshFI	GGCC	4 cut(s)	234, 388, 429, 786
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	62, 247, 739
BslI	CCNNNNNNNGG	2 cut(s)	68, 276
BsmAI	GTCTC	1 cut(s)	801
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	4 cut(s)	234, 388, 429, 786
BsoBI	CYCGRG	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	471, 669, 730, 778
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	4 cut(s)	234, 388, 429, 786
BspCNI	CTCAG	4 cut(s)	147, 181, 613, 703
BspHI	TCATGA	1 cut(s)	799
BspMAI	CTGCAG	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	466, 677
BspQI	GCTCTTC	2 cut(s)	644, 798
BsrI	ACTGG	2 cut(s)	533, 701
BssECI	CCNNGG	2 cut(s)	246, 389
BssMI	GATC	4 cut(s)	471, 669, 730, 778
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	56, 302, 416
Bst6I	CTCTTC	2 cut(s)	644, 798
BstC8I	GCNNGC	2 cut(s)	36, 486
BstDEI	CTNAG	5 cut(s)	134, 189, 350, 600, 711
BstF5I	GGATG	3 cut(s)	256, 583, 820
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	474, 672, 733, 781
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	4 cut(s)	471, 669, 730, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	245, 246, 388
BstSFI	CTRYAG	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	4 cut(s)	234, 388, 429, 786
BtsCI	GGATG	3 cut(s)	256, 583, 820
BtsI	GCAGTG	3 cut(s)	29, 180, 489
BtsIMutI	CAGTG	3 cut(s)	29, 180, 489
Cac8I	GCNNGC	2 cut(s)	36, 486
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	785
Cfr9I	CCCGGG	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	406, 462, 800
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	5 cut(s)	134, 189, 350, 600, 711
DpnI	GATC	4 cut(s)	473, 671, 732, 780
DpnII	GATC	4 cut(s)	471, 669, 730, 778
Eam1104I	CTCTTC	2 cut(s)	644, 798
EarI	CTCTTC	2 cut(s)	644, 798
Eco147I	AGGCCT	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	755
Eco81I	CCTNAGG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	755
FaeI	CATG	3 cut(s)	409, 465, 803
FatI	CATG	3 cut(s)	405, 461, 799
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	2 cut(s)	263, 590
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	3 cut(s)	35, 74, 425
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	542
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	234, 388, 429, 786
HapII	CCGG	3 cut(s)	62, 247, 739
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	409, 465, 803
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	4 cut(s)	346, 379, 447, 529
HpaII	CCGG	3 cut(s)	62, 247, 739
HphI	GGTGA	4 cut(s)	290, 424, 646, 658
Hpy188I	TCNGA	4 cut(s)	106, 321, 378, 420
Hpy188III	TCNNGA	3 cut(s)	20, 710, 800
HpyCH4III	ACNGT	3 cut(s)	56, 302, 416
HpyCH4V	TGCA	6 cut(s)	67, 290, 453, 465, 509, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	5 cut(s)	134, 189, 350, 600, 711
Hsp92II	CATG	3 cut(s)	409, 465, 803
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	471, 669, 730, 778
LguI	GCTCTTC	2 cut(s)	644, 798
LmnI	GCTCC	1 cut(s)	715
LweI	GCATC	2 cut(s)	277, 568
MaeI	CTAG	3 cut(s)	35, 74, 425
MaeIII	GTNAC	3 cut(s)	50, 152, 262
MalI	GATC	4 cut(s)	473, 671, 732, 780
MboI	GATC	4 cut(s)	471, 669, 730, 778
MboII	GAAGA	3 cut(s)	559, 661, 815
MflI	RGATCY	1 cut(s)	471
MluCI	AATT	4 cut(s)	147, 454, 560, 767
MlyI	GAGTC	1 cut(s)	456
MroXI	GAANNNNTTC	2 cut(s)	129, 653
MseI	TTAA	2 cut(s)	366, 826
MspI	CCGG	3 cut(s)	62, 247, 739
MspR9I	CCNGG	3 cut(s)	247, 248, 390
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	625
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	4 cut(s)	471, 669, 730, 778
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	409, 465, 803
PagI	TCATGA	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	429
PciSI	GCTCTTC	2 cut(s)	644, 798
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	2 cut(s)	129, 653
PfeI	GAWTC	3 cut(s)	346, 379, 529
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	785
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	471
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SapI	GCTCTTC	2 cut(s)	644, 798
SaqAI	TTAA	2 cut(s)	366, 826
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	4 cut(s)	471, 669, 730, 778
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	247, 248, 390
SfaNI	GCATC	2 cut(s)	277, 568
SfcI	CTRYAG	1 cut(s)	507
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	147, 454, 560, 767
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	1 cut(s)	690
SspMI	CTAG	3 cut(s)	35, 74, 425
StuI	AGGCCT	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	245, 246, 388
TaaI	ACNGT	3 cut(s)	56, 302, 416
TasI	AATT	4 cut(s)	147, 454, 560, 767
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	3 cut(s)	346, 379, 529
Tru1I	TTAA	2 cut(s)	366, 826
Tru9I	TTAA	2 cut(s)	366, 826
TscAI	CASTG	3 cut(s)	36, 180, 496
TspDTI	ATGAA	8 cut(s)	267, 359, 371, 422, 450, 542, 760, 816
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	3 cut(s)	36, 180, 496
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	767
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	129, 653
XspI	CTAG	3 cut(s)	35, 74, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.