RLG00000006791

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000205
Physical Location & Seq
Reverse (-)
10615667 .. 10616670
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006791

Sequence Viewer

Length: 798 bp
ATGCCTGTGCTCGGCTTTGGCACAGCAACTGACTACTTGGACCCGAATGCTTTGAAGACTGCGGTTCTTGAAGCCATAAAGCTGGGTTACAGACACTTCGACACGGCTTCCATATACACCTCAGAGCAGACTCTAGGTGAAGCCGTGGCCGAAGCTATTAGCCTCGGTCTTATTGCCTCTAGAGACCAAGTGTTCATCACTTCCAAGCTGTGGTGTAATGATGCTCATCCAGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCAGAATCTTCAAATGGAGTACCTTGATCTGTATCTGATTCACTGGCCCATAAGTGGTAAGCCAGGGAAATTAGTGTACCCGCTAACCGAAGAGGACCTTGTGCCATTGGACTTGAAGGGCGTGTGGGCAGCCATGGAGGACTCACAGAGACTTGGCCTCACCAAATCTATAGGAGTCAGCAATTTCTCTTCCAAAAAGACCGAAAATCTGCTCTCTTTTGCTACTATTCCTCCTTCGGTCAATCAAGTGGAGATGAGCCCATTTTGGCAACAAAAGAAGCTGAGAGACTTCTGCAAGGCTAATGGTGTAGTTGTGACAGCCTACTCCCCATTGGGTGGCAGTGGGACAAGTTGGGGAAGCAGTCACGTTCTGGAGAGCAAAGTGCTTCAGGAAATCGCCGAGGCTTGGGGGAAGACTATTGCTCAGGTTTGTATTAGGTGGGTGTACCAAACAGGGACAACAGTTGCAGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTTGACTGGGAACTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

266

Amino Acids

29.36

Weight (kDa)

6.11

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 5 - 265 6.1e-55 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 763
Acc36I ACCTGC 1 cut(s) 763
AccB7I CCANNNNNTGG 2 cut(s) 210, 599
AciI CCGC 2 cut(s) 62, 344
AcoI YGGCCR 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 248, 635
AfaI GTAC 3 cut(s) 284, 341, 710
AfiI CCNNNNNNNGG 5 cut(s) 11, 210, 317, 599, 669
AgsI TTSAA 5 cut(s) 55, 71, 275, 379, 760
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 5 cut(s) 82, 155, 208, 544, 741
AluI AGCT 5 cut(s) 82, 155, 208, 544, 741
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 3 cut(s) 177, 406, 543
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 3 cut(s) 147, 308, 418
ApeKI GCWGC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 40, 309, 358
AsuHPI GGTGA 2 cut(s) 149, 415
AvaII GGWCC 2 cut(s) 40, 358
BanII GRGCYC 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 62, 683
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 404
BceAI ACGGC 2 cut(s) 120, 128
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 3 cut(s) 177, 406, 543
BfaI CTAG 2 cut(s) 134, 180
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 763
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 2 cut(s) 40, 358
BmgT120I GGNCC 3 cut(s) 40, 309, 358
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 62, 683
BpmI CTGGAG 1 cut(s) 656
Bpu10I CCTNAGC 1 cut(s) 687
BsaBI GATNNNNATC 2 cut(s) 225, 294
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 5 cut(s) 144, 163, 326, 396, 663
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 210, 317, 599, 669
Bse1I ACTGG 2 cut(s) 311, 788
Bse8I GATNNNNATC 2 cut(s) 225, 294
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 5 cut(s) 144, 163, 326, 396, 663
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 2 cut(s) 225, 294
BseLI CCNNNNNNNGG 5 cut(s) 11, 210, 317, 599, 669
BseMII CTCAG 3 cut(s) 135, 536, 701
BseNI ACTGG 2 cut(s) 311, 788
BseXI GCAGC 1 cut(s) 404
BseYI CCCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 791
BshFI GGCC 3 cut(s) 149, 310, 420
BsiHKAI GWGCWC 1 cut(s) 12
BslFI GGGAC 2 cut(s) 622, 733
BslI CCNNNNNNNGG 5 cut(s) 11, 210, 317, 599, 669
BsmAI GTCTC 3 cut(s) 177, 406, 543
BsmFI GGGAC 2 cut(s) 622, 733
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 3 cut(s) 149, 310, 420
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 12, 524
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 62, 344
BspANI GGCC 3 cut(s) 149, 310, 420
BspCNI CTCAG 3 cut(s) 134, 537, 700
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 763
BspTNI GGTCTC 1 cut(s) 177
BsrI ACTGG 2 cut(s) 311, 788
BssECI CCNNGG 5 cut(s) 144, 163, 326, 396, 663
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 727
Bst6I CTCTTC 2 cut(s) 348, 457
BstAPI GCANNNNNTGC 1 cut(s) 769
BstDEI CTNAG 3 cut(s) 121, 545, 687
BstDSI CCRYGG 2 cut(s) 144, 396
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 3 cut(s) 177, 406, 543
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 769
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 2 cut(s) 62, 683
BstXI CCANNNNNNTGG 1 cut(s) 82
BsuRI GGCC 3 cut(s) 149, 310, 420
BtgI CCRYGG 2 cut(s) 144, 396
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 610
BtsIMutI CAGTG 2 cut(s) 304, 610
BveI ACCTGC 1 cut(s) 763
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 40, 309, 358
Csp6I GTAC 3 cut(s) 283, 340, 709
CviAII CATG 1 cut(s) 397
CviQI GTAC 3 cut(s) 283, 340, 709
DdeI CTNAG 3 cut(s) 121, 545, 687
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 348, 457
EarI CTCTTC 2 cut(s) 348, 457
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 524
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 40, 358
Eco57I CTGAAG 2 cut(s) 248, 635
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 400
FaiI YATR 7 cut(s) 77, 113, 115, 314, 398, 434, 796
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 622, 733
FatI CATG 1 cut(s) 396
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 2 cut(s) 134, 180
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 3 cut(s) 149, 310, 420
Hin1II CATG 1 cut(s) 400
HinfI GANTC 5 cut(s) 130, 268, 301, 404, 438
HphI GGTGA 2 cut(s) 149, 415
Hpy166II GTNNAC 2 cut(s) 340, 709
Hpy188I TCNGA 3 cut(s) 124, 267, 300
Hpy188III TCNNGA 5 cut(s) 68, 180, 230, 635, 653
Hpy8I GTNNAC 2 cut(s) 340, 709
HpyAV CCTTC 2 cut(s) 373, 507
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 3 cut(s) 558, 731, 772
HpyF10VI GCNNNNNNNGC 1 cut(s) 769
HpyF3I CTNAG 3 cut(s) 121, 545, 687
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 1 cut(s) 400
Kzo9I GATC 1 cut(s) 289
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 134, 180
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 3 cut(s) 86, 577, 626
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 5 cut(s) 67, 263, 365, 444, 688
MhlI GDGCHC 2 cut(s) 12, 524
MluCI AATT 2 cut(s) 332, 445
MlyI GAGTC 3 cut(s) 124, 398, 447
MnlI CCTC 9 cut(s) 130, 173, 187, 349, 394, 431, 504, 658, 747
MseI TTAA 1 cut(s) 735
MspR9I CCNGG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 769
NcoI CCATGG 1 cut(s) 396
NdeII GATC 1 cut(s) 289
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 688
NmuCI GTSAC 2 cut(s) 577, 626
PaqCI CACCTGC 1 cut(s) 763
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 268, 301
PflFI GACNNNGTC 1 cut(s) 236
PflMI CCANNNNNTGG 2 cut(s) 210, 599
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 3 cut(s) 124, 398, 446
PpsI GAGTC 3 cut(s) 124, 398, 446
PpuMI RGGWCCY 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 82
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 3 cut(s) 40, 309, 358
PspPPI RGGWCCY 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 3 cut(s) 284, 341, 710
RsaNI GTAC 3 cut(s) 283, 340, 709
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 3 cut(s) 40, 309, 358
SchI GAGTC 3 cut(s) 124, 398, 447
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 12, 524
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 2 cut(s) 40, 358
Sse9I AATT 2 cut(s) 332, 445
SsiI CCGC 2 cut(s) 62, 344
SspMI CTAG 2 cut(s) 134, 180
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 727
TaiI ACGT 1 cut(s) 633
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 3 cut(s) 155, 479, 490
TasI AATT 2 cut(s) 332, 445
TfiI GAWTC 2 cut(s) 268, 301
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 2 cut(s) 311, 610
TseFI GTSAC 2 cut(s) 577, 626
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 2 cut(s) 577, 626
TspDTI ATGAA 1 cut(s) 184
TspRI CASTG 2 cut(s) 311, 610
Tth111I GACNNNGTC 1 cut(s) 236
Van91I CCANNNNNTGG 2 cut(s) 210, 599
VpaK11BI GGWCC 2 cut(s) 40, 358
XbaI TCTAGA 1 cut(s) 179
XspI CTAG 2 cut(s) 134, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.