Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

74178475 .. 74179761

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAAGCATGAGCATTCCGGAGTTACCACTACTAGCCTCCCCAAGTAGTTACAGTATTCCGGTGCAAGGTCTAGGAACGGCTGTGTATCCTTTTCGTTCCTCTGAACAAAGTAAAAATAAAGAAGCCATTCTCAGCGCAATCAAAGTTGGTTACAGTCATTTTGATACGGCAGCGGCTTATCAGACTGAGAATCTGAGATTGGAGTACCTTAACCTTTATCTGATTCATTGGCCTGTGAGTTTGAAGACAGGAAGCTATGACTTTCCTGTTAACAAAGAGCACCTTCTTCCTATAGACTTTAAGGGGGTGTGGGAAGCCATGGAAGAATGTCAGAAGCTAGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGATCGAAACCTTGCTTGCCACTGCCAAAATCCCTCCTGCAGTCAATCAAGTGGAGATGAATCCAATATGGCAGCAGAAGAAGTTGAGAGAATTGTGTAAGAGAAAGGGTATAGTTGTCACGGCCTACTCTCCTTTGGGGGGAAAAGGAACACCTTGGGAATCAAACGCCATTATGGAATGTGAAGTCCTCAAACAGATTGCAGATGCAAAAGGAAAATCTCTTGCTCAGGTTTGTTTGAGGTGGCTTTATGAGCAAGGGGTGAGTTTTGTGGTGAAGAGCTTCAATAAGGAGAGGATCAAAGAAAATGTGGAAATATTTGACTGGGAGCTAAATCCTGAGGAGCTGGAAAAGATAGATCAAATCCCTCAGAAAAGAGGATATCTCGCATTTGAATTCATAGCAGATCAAGGCCCTTACAAGTCTCCTGAAGAGTTTTGGGATGGGGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

279

Amino Acids

31.63

Weight (kDa)

5.63

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	64 - 250	1.3e-37	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	1 cut(s)	834
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	68, 524
AgsI	TTSAA	3 cut(s)	247, 670, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	5 cut(s)	258, 340, 666, 715, 730
AluI	AGCT	5 cut(s)	258, 340, 666, 715, 730
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	4 cut(s)	233, 343, 507, 796
ApeKI	GCWGC	2 cut(s)	173, 457
ApoI	RAATTY	1 cut(s)	779
Asp700I	GAANNNNTTC	2 cut(s)	129, 665
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	797
AsuHPI	GGTGA	3 cut(s)	340, 658, 670
AxyI	CCTNAGG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	185, 469
BccI	CCATC	1 cut(s)	821
BceAI	ACGGC	3 cut(s)	96, 186, 522
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciVI	GTATCC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	3 cut(s)	35, 74, 341
BfmI	CTRYAG	2 cut(s)	294, 423
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	3 cut(s)	174, 177, 458
BlsI	GCNGC	3 cut(s)	175, 178, 459
BmgT120I	GGNCC	1 cut(s)	797
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	753, 785
Bpu10I	CCTNAGC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	321, 539
BsaWI	WCCGGW	2 cut(s)	19, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 524
Bse1I	ACTGG	1 cut(s)	713
Bse21I	CCTNAGG	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	321, 539
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	2 cut(s)	68, 524
BseMII	CTCAG	6 cut(s)	148, 180, 188, 626, 714, 767
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	185, 469
BshFI	GGCC	4 cut(s)	235, 345, 509, 798
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	20, 62
BslI	CCNNNNNNNGG	2 cut(s)	68, 524
BsmAI	GTCTC	1 cut(s)	813
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	4 cut(s)	235, 345, 509, 798
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	387, 681, 742, 790
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	235, 345, 509, 798
BspCNI	CTCAG	6 cut(s)	147, 181, 189, 625, 715, 766
BspEI	TCCGGA	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	321, 539
BssMI	GATC	4 cut(s)	387, 681, 742, 790
BssT1I	CCWWGG	2 cut(s)	321, 539
Bst4CI	ACNGT	2 cut(s)	56, 158
Bst6I	CTCTTC	2 cut(s)	656, 810
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	6 cut(s)	134, 189, 197, 612, 723, 753
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	390, 684, 745, 793
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	4 cut(s)	387, 681, 742, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstSFI	CTRYAG	2 cut(s)	294, 423
BstV1I	GCAGC	2 cut(s)	185, 469
BstV2I	GAAGAC	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	4 cut(s)	235, 345, 509, 798
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	832
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	10, 322, 378
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	6 cut(s)	134, 189, 197, 612, 723, 753
DpnI	GATC	4 cut(s)	389, 683, 744, 792
DpnII	GATC	4 cut(s)	387, 681, 742, 790
Eam1104I	CTCTTC	2 cut(s)	656, 810
EarI	CTCTTC	2 cut(s)	656, 810
Eco130I	CCWWGG	2 cut(s)	321, 539
Eco147I	AGGCCT	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	834
Eco81I	CCTNAGG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	797
EcoRI	GAATTC	1 cut(s)	779
EcoRV	GATATC	1 cut(s)	767
EcoT14I	CCWWGG	2 cut(s)	321, 539
ErhI	CCWWGG	2 cut(s)	321, 539
FaeI	CATG	3 cut(s)	13, 325, 381
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	3 cut(s)	9, 321, 377
Fnu4HI	GCNGC	3 cut(s)	174, 177, 458
Fsp4HI	GCNGC	3 cut(s)	174, 177, 458
FspBI	CTAG	3 cut(s)	35, 74, 341
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	174, 177, 458
HaeIII	GGCC	4 cut(s)	235, 345, 509, 798
HapII	CCGG	2 cut(s)	20, 62
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	13, 325, 381
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	5 cut(s)	193, 226, 363, 445, 545
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	20, 62
HphI	GGTGA	3 cut(s)	340, 658, 670
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	6 cut(s)	106, 186, 198, 225, 336, 756
Hpy188III	TCNNGA	3 cut(s)	20, 722, 812
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	56, 158
HpyCH4V	TGCA	6 cut(s)	67, 369, 381, 425, 587, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	6 cut(s)	134, 189, 197, 612, 723, 753
Hsp92II	CATG	3 cut(s)	13, 325, 381
HspAI	GCGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	387, 681, 742, 790
LguI	GCTCTTC	1 cut(s)	656
LmnI	GCTCC	2 cut(s)	712, 727
Lsp1109I	GCAGC	2 cut(s)	185, 469
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	3 cut(s)	35, 74, 341
MaeIII	GTNAC	4 cut(s)	24, 50, 152, 502
MalI	GATC	4 cut(s)	389, 683, 744, 792
MboI	GATC	4 cut(s)	387, 681, 742, 790
MboII	GAAGA	6 cut(s)	259, 281, 338, 475, 673, 827
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	370, 476, 779
MlyI	GAGTC	1 cut(s)	372
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	2 cut(s)	129, 665
MseI	TTAA	4 cut(s)	213, 273, 303, 838
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	20, 62
Mva1269I	GAATGC	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	637
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	387, 681, 742, 790
NlaIII	CATG	3 cut(s)	13, 325, 381
NmuCI	GTSAC	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	656
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	2 cut(s)	129, 665
PfeI	GAWTC	4 cut(s)	193, 226, 445, 545
PkrI	GCNGC	3 cut(s)	175, 178, 459
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	797
PstI	CTGCAG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	656
SaqAI	TTAA	4 cut(s)	213, 273, 303, 838
SatI	GCNGC	3 cut(s)	174, 177, 458
Sau3AI	GATC	4 cut(s)	387, 681, 742, 790
Sau96I	GGNCC	1 cut(s)	797
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	2 cut(s)	294, 423
Sse9I	AATT	3 cut(s)	370, 476, 779
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	1 cut(s)	176
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	3 cut(s)	35, 74, 341
StuI	AGGCCT	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	321, 539
TaaI	ACNGT	2 cut(s)	56, 158
TaqI	TCGA	1 cut(s)	390
TasI	AATT	3 cut(s)	370, 476, 779
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	193, 226, 445, 545
Tru1I	TTAA	4 cut(s)	213, 273, 303, 838
Tru9I	TTAA	4 cut(s)	213, 273, 303, 838
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	173, 457
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	4 cut(s)	218, 366, 458, 772
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	779
XmnI	GAANNNNTTC	2 cut(s)	129, 665
XspI	CTAG	3 cut(s)	35, 74, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.