Rroxscaffold_1G00013240

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
16284688 .. 16286331
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013240.1

Sequence Viewer

Length: 711 bp
ATGGGAAGCTTAATTACCAGTAGCCGAAAATGTCTTATCACGTTCCATCAACATTCCAGTGTTGCGGCTGTTGCCACTGAAATCATAAAAGAAGCCATTCTCGATGCGATCAGAGTTGGCTACAGACATTTTGACACAGCCGCTCTTTACCAGACGGAGCAGAGCCTCGGTGAAGCCATTTCGGAAGCTCTTTCTCTTGGCCTCATCGAATCCCGGCAAGACCTCTTCATCACTTCCAAGCTGTGGTGCAGTGATGCTCACCCCCACCGTGTCTTACCTACCATTCGCATTACGCTCAATGTGAAGCTGGGAAACTATGACTTTCCGTTTGACAAAGAGTACCTTCTTCCAATCGACTTCAAGGGTGGAGATGAACCCGCTTTGGCAGCAGAGAAAGCTAAGAGAGTTTTGCCAGAAAAATGGTATACTAATCATGGCCTACTCTCCTTTGGGAGCAAAAGGAACACCTTGGGTATCAAATGGCCTGGAGTCATGAAATCTGAGACGCTAGCTCACGCAGATTGCAGATGCGAAAGGGAAAACCCTTGCCCAGGTTTGTCTGAGGTGGGCATACGAGCAAGAGAGGAGGTGGAGAAGATCAATCAAATTCCACAGAAAAGAGGATTTCCTGCATTCGACTTCGTTGCGGATCATGGCCCTTACAAGACTTTGAGGAACTGTGGGAGGGAGAGATTTAACAATCACAATTGA

Protein Analysis

236

Amino Acids

26.56

Weight (kDa)

8.19

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 26 - 95 3.4e-08 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 425
AciI CCGC 4 cut(s) 65, 141, 378, 647
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 1 cut(s) 606
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 243, 551
AgsI TTSAA 1 cut(s) 361
AjnI CCWGG 2 cut(s) 484, 550
AluBI AGCT 6 cut(s) 9, 188, 241, 307, 398, 512
AluI AGCT 6 cut(s) 9, 188, 241, 307, 398, 512
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 1 cut(s) 657
AoxI GGCC 4 cut(s) 199, 436, 482, 655
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 606
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 182, 251
AsuNHI GCTAGC 1 cut(s) 508
BarI GAAGNNNNNNTAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 398
BccI CCATC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 2 cut(s) 486, 552
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 121
BisI GCNGC 3 cut(s) 66, 141, 387
BlsI GCNGC 3 cut(s) 67, 142, 388
Bme1390I CCNGG 3 cut(s) 214, 486, 552
BmgT120I GGNCC 1 cut(s) 656
BmrFI CCNGG 3 cut(s) 214, 486, 552
BmsI GCATC 3 cut(s) 94, 244, 518
BmtI GCTAGC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 166, 468, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 551
Bse1I ACTGG 2 cut(s) 18, 57
BseBI CCWGG 2 cut(s) 486, 552
BseDI CCNNGG 3 cut(s) 166, 468, 550
BseLI CCNNNNNNNGG 2 cut(s) 243, 551
BseMII CTCAG 2 cut(s) 492, 552
BseNI ACTGG 2 cut(s) 18, 57
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 4 cut(s) 201, 438, 484, 657
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 243, 551
BsmAI GTCTC 1 cut(s) 497
BsmBI CGTCTC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 4 cut(s) 201, 438, 484, 657
Bsp143I GATC 3 cut(s) 108, 597, 649
BspACI CCGC 4 cut(s) 65, 141, 378, 647
BspANI GGCC 4 cut(s) 201, 438, 484, 657
BspCNI CTCAG 2 cut(s) 493, 553
BspHI TCATGA 1 cut(s) 492
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 657
BsrBI CCGCTC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 18, 57
BssECI CCNNGG 3 cut(s) 166, 468, 550
BssMI GATC 3 cut(s) 108, 597, 649
BssNAI GTATAC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 486, 552
Bst4CI ACNGT 2 cut(s) 269, 680
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 399, 501, 561
BstENI CCTNNNNNAGG 1 cut(s) 549
BstKTI GATC 3 cut(s) 111, 600, 652
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 3 cut(s) 108, 597, 649
BstMWI GCNNNNNNNGC 3 cut(s) 71, 386, 395
BstNI CCWGG 2 cut(s) 486, 552
BstSCI CCNGG 3 cut(s) 212, 484, 550
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 398
BstXI CCANNNNNNTGG 1 cut(s) 420
BstZ17I GTATAC 1 cut(s) 426
BsuRI GGCC 4 cut(s) 201, 438, 484, 657
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 64, 75, 256
Cac8I GCNNGC 1 cut(s) 510
CciI TCATGA 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 656
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 434, 493, 653
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 399, 501, 561
DpnI GATC 3 cut(s) 110, 599, 651
DpnII GATC 3 cut(s) 108, 597, 649
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 484, 550
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 3 cut(s) 437, 496, 656
FaiI YATR 7 cut(s) 86, 318, 426, 435, 494, 572, 654
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 3 cut(s) 433, 492, 652
FauI CCCGC 1 cut(s) 385
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 3 cut(s) 66, 141, 387
Fsp4HI GCNGC 3 cut(s) 66, 141, 387
FspBI CTAG 1 cut(s) 509
GluI GCNGC 3 cut(s) 66, 141, 387
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 4 cut(s) 201, 438, 484, 657
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 514
Hin1II CATG 3 cut(s) 437, 496, 656
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 209, 489
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 182, 251
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 4 cut(s) 113, 184, 502, 562
Hpy188III TCNNGA 2 cut(s) 101, 493
Hpy8I GTNNAC 1 cut(s) 426
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 269, 680
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 249, 525, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 386, 395
HpyF3I CTNAG 3 cut(s) 399, 501, 561
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 3 cut(s) 437, 496, 656
Kzo9I GATC 3 cut(s) 108, 597, 649
LmnI GCTCC 2 cut(s) 157, 453
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 3 cut(s) 94, 244, 518
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 41
MalI GATC 3 cut(s) 110, 599, 651
MbiI CCGCTC 1 cut(s) 143
MboI GATC 3 cut(s) 108, 597, 649
MboII GAAGA 3 cut(s) 217, 338, 607
MfeI CAATTG 1 cut(s) 706
MluCI AATT 3 cut(s) 12, 606, 706
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 9 cut(s) 176, 212, 233, 556, 577, 580, 614, 666, 678
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 2 cut(s) 11, 696
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 3 cut(s) 214, 486, 552
MunI CAATTG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 2 cut(s) 486, 552
MwoI GCNNNNNNNGC 3 cut(s) 71, 386, 395
NciI CCSGG 1 cut(s) 214
NdeII GATC 3 cut(s) 108, 597, 649
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 3 cut(s) 437, 496, 656
PagI TCATGA 1 cut(s) 492
PctI GAATGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 67, 142, 388
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 484, 550
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 484, 550
PspPI GGNCC 1 cut(s) 656
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 11, 696
SatI GCNGC 3 cut(s) 66, 141, 387
Sau3AI GATC 3 cut(s) 108, 597, 649
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 3 cut(s) 214, 486, 552
SfaNI GCATC 3 cut(s) 94, 244, 518
SfcI CTRYAG 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 3 cut(s) 12, 606, 706
SsiI CCGC 4 cut(s) 65, 141, 378, 647
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 3 cut(s) 212, 484, 550
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 269, 680
TaiI ACGT 1 cut(s) 44
TaqI TCGA 4 cut(s) 102, 207, 354, 636
TasI AATT 3 cut(s) 12, 606, 706
TauI GCSGC 2 cut(s) 68, 143
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 11, 696
Tru9I TTAA 2 cut(s) 11, 696
TscAI CASTG 3 cut(s) 64, 82, 256
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 217, 387, 509
TspGWI ACGGA 2 cut(s) 170, 315
TspRI CASTG 3 cut(s) 64, 82, 256
Van91I CCANNNNNTGG 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.