Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

20002300 .. 20004423

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGAAGATAAGCAATATTCCGGAGTTGGCGCTAACCGTGGTCCCAAATAGTATTGCAAGTGATAAAAGCAGTATTCCGGTGCTGGGTTTAGGAACGGCTGCATATCCTTTTGTTGCCTCTGAAGCAGCAAAAGAAGCCATTCTCACTGCAATCAAAGTCGGCTACAGACATTTTGATACCGCTGCTGCTTACCAGACGGAGCCAGTTCTTGGTGAAGCCATTGCCGAAGCTCTTTCACTTGGCCTCGTCAAATCCAGGGATGAGCTTTTTGTTACTTCCAAGCTTTGGTTGACGGATGCACACCATCACCTTGTCCTGCCTGCCATTCATAAGACACTCAAGAATCTAGGATTGGAATACCTAGATTTGTATCTCATTCATTGGCCTATGAGTTTGGAGCCGGGAAGCTATGACATACCTTGGAAGAAAGAGCATCTTCTTCCTATGGACTTCAAGTCGGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGGAGTCAGCAATTTCTCATGCAAAAAGATTGAAATCTTGCTTTCCACTGCAAAAATCACTCCTGCAGTCAACCAAGTAATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

199

Amino Acids

21.89

Weight (kDa)

6.16

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	29 - 197	1.5e-34	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	212, 288
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
AgsI	TTSAA	2 cut(s)	457, 545
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	5 cut(s)	233, 268, 286, 411, 493
AluI	AGCT	5 cut(s)	233, 268, 286, 411, 493
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	3 cut(s)	244, 386, 496
ApeKI	GCWGC	4 cut(s)	101, 128, 185, 188
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	227, 302, 493
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	88, 140, 172, 175
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	405
BfaI	CTAG	3 cut(s)	350, 365, 494
BfmI	CTRYAG	2 cut(s)	166, 576
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	4 cut(s)	102, 129, 186, 189
BlsI	GCNGC	4 cut(s)	103, 130, 187, 190
Bme1390I	CCNGG	2 cut(s)	259, 405
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	3 cut(s)	45, 204, 402
BmrFI	CCNGG	2 cut(s)	259, 405
BmsI	GCATC	2 cut(s)	289, 445
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	405
BsaBI	GATNNNNATC	2 cut(s)	372, 545
BsaJI	CCNNGG	4 cut(s)	39, 258, 422, 504
BsaWI	WCCGGW	2 cut(s)	22, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	2 cut(s)	222, 480
Bse8I	GATNNNNATC	2 cut(s)	372, 545
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	4 cut(s)	39, 258, 422, 504
BseGI	GGATG	2 cut(s)	268, 304
BseJI	GATNNNNATC	2 cut(s)	372, 545
BseLI	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
BseMI	GCAATG	2 cut(s)	222, 480
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	4 cut(s)	88, 140, 172, 175
BseYI	CCCAGC	1 cut(s)	85
BshFI	GGCC	3 cut(s)	246, 388, 498
BsiSI	CCGG	3 cut(s)	23, 80, 404
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	3 cut(s)	246, 388, 498
Bsp13I	TCCGGA	1 cut(s)	22
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	3 cut(s)	246, 388, 498
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	45, 204, 402
BspMAI	CTGCAG	1 cut(s)	580
BsrDI	GCAATG	2 cut(s)	222, 480
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	39, 258, 422, 504
BssT1I	CCWWGG	2 cut(s)	422, 504
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	268, 304
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 137
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	257, 403
BstSFI	CTRYAG	2 cut(s)	166, 576
BstV1I	GCAGC	4 cut(s)	88, 140, 172, 175
BsuRI	GGCC	3 cut(s)	246, 388, 498
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	268, 304
BtsI	GCAGTG	2 cut(s)	147, 558
BtsIMutI	CAGTG	2 cut(s)	147, 558
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	43
CviAII	CATG	1 cut(s)	531
DriI	GACNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	422, 504
Eco147I	AGGCCT	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	422, 504
ErhI	CCWWGG	2 cut(s)	422, 504
FaeI	CATG	1 cut(s)	534
FaiI	YATR	7 cut(s)	106, 333, 392, 414, 419, 449, 532
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	530
Fnu4HI	GCNGC	4 cut(s)	102, 129, 186, 189
FokI	GGATG	2 cut(s)	275, 311
Fsp4HI	GCNGC	4 cut(s)	102, 129, 186, 189
FspBI	CTAG	3 cut(s)	350, 365, 494
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	102, 129, 186, 189
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	246, 388, 498
HapII	CCGG	3 cut(s)	23, 80, 404
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	2 cut(s)	294, 583
HindII	GTYRAC	2 cut(s)	294, 583
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	2 cut(s)	346, 516
HpaII	CCGG	3 cut(s)	23, 80, 404
HphI	GGTGA	3 cut(s)	227, 302, 493
Hpy166II	GTNNAC	2 cut(s)	294, 583
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	23, 343
Hpy8I	GTNNAC	2 cut(s)	294, 583
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	7 cut(s)	59, 104, 152, 302, 534, 563, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 137
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	202, 400
Lsp1109I	GCAGC	4 cut(s)	88, 140, 172, 175
LweI	GCATC	2 cut(s)	289, 445
MaeI	CTAG	3 cut(s)	350, 365, 494
MaeIII	GTNAC	1 cut(s)	274
MboII	GAAGA	5 cut(s)	19, 431, 434, 439, 491
MluCI	AATT	2 cut(s)	523, 591
MlyI	GAGTC	1 cut(s)	525
MnlI	CCTC	3 cut(s)	130, 257, 509
MroI	TCCGGA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	23, 80, 404
MspR9I	CCNGG	2 cut(s)	259, 405
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	125, 137
NciI	CCSGG	1 cut(s)	405
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	3 cut(s)	45, 204, 402
PceI	AGGCCT	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	2 cut(s)	212, 288
PkrI	GCNGC	4 cut(s)	103, 130, 187, 190
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	3 cut(s)	45, 204, 402
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	580
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	4 cut(s)	102, 129, 186, 189
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	259, 405
SetI	ASST	8 cut(s)	235, 270, 288, 315, 366, 413, 424, 495
SfaNI	GCATC	2 cut(s)	289, 445
SfcI	CTRYAG	2 cut(s)	166, 576
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	523, 591
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	350, 365, 494
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	257, 403
StyI	CCWWGG	2 cut(s)	422, 504
TaaI	ACNGT	1 cut(s)	40
TasI	AATT	2 cut(s)	523, 591
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	2 cut(s)	154, 565
TseI	GCWGC	4 cut(s)	101, 128, 185, 188
TspDTI	ATGAA	2 cut(s)	320, 371
TspGWI	ACGGA	2 cut(s)	215, 311
TspRI	CASTG	2 cut(s)	154, 565
Van91I	CCANNNNNTGG	2 cut(s)	212, 288
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	3 cut(s)	350, 365, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.