Rh5DG168900

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000205
Physical Location & Seq
Reverse (-)
18081339 .. 18081845
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG168900.1

Sequence Viewer

Length: 402 bp
ATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGACTTCTGCAAGGCCAACGGTATAGTTGTGACTGCCTTCCCCCCATTGGGTGCCATAGGAGCCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGTTCAGGTGTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCGCAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACGAGTCCCTTGATGAGTTATGGGATGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

133

Amino Acids

15.28

Weight (kDa)

5.26

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 103 5.4e-13 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 83, 104
AclWI GGATC 1 cut(s) 294
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 3 cut(s) 79, 80, 153
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 2 cut(s) 28, 225
AluI AGCT 2 cut(s) 28, 225
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 359
BanI GGYRCC 2 cut(s) 83, 104
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 3 cut(s) 180, 319, 383
BceAI ACGGC 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 3 cut(s) 85, 94, 106
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 80, 153
Bse1I ACTGG 2 cut(s) 96, 272
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 79, 80, 153
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 2 cut(s) 96, 272
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 2 cut(s) 83, 104
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 3 cut(s) 79, 80, 153
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 8, 135
Bsp143I GATC 2 cut(s) 286, 297
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 85, 94, 106
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 215
BspT107I GGYRCC 2 cut(s) 83, 104
BsrI ACTGG 2 cut(s) 96, 272
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 286, 297
Bst4CI ACNGT 2 cut(s) 53, 166
Bst6I CTCTTC 3 cut(s) 215, 276, 333
BstAPI GCANNNNNTGC 2 cut(s) 212, 253
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 2 cut(s) 289, 300
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 286, 297
BstMWI GCNNNNNNNGC 3 cut(s) 92, 212, 253
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 113
CviJI RGCY 7 cut(s) 6, 28, 47, 95, 152, 225, 353
CviKI_1 RGCY 7 cut(s) 6, 28, 47, 95, 152, 225, 353
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 29
DpnI GATC 2 cut(s) 288, 299
DpnII GATC 2 cut(s) 286, 297
Eam1104I CTCTTC 3 cut(s) 215, 276, 333
EarI CTCTTC 3 cut(s) 215, 276, 333
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 116
FaiI YATR 5 cut(s) 56, 89, 114, 364, 385
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 8
GlaI GCGC 1 cut(s) 317
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 357
HhaI GCGC 1 cut(s) 318
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 357
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 3 cut(s) 119, 290, 332
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 53, 166
HpyCH4V TGCA 4 cut(s) 42, 180, 215, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 212, 253
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 316
KpnI GGTACC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 286, 297
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 2 cut(s) 92, 203
LpnPI CCDG 6 cut(s) 109, 158, 182, 242, 253, 370
MaeIII GTNAC 2 cut(s) 61, 346
MalI GATC 2 cut(s) 288, 299
MboI GATC 2 cut(s) 286, 297
MboII GAAGA 5 cut(s) 232, 293, 307, 347, 350
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 8, 135
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 3 cut(s) 142, 231, 277
MseI TTAA 1 cut(s) 400
MspI CCGG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 92, 212, 253
NdeII GATC 2 cut(s) 286, 297
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 85, 94, 106
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 61
PaqCI CACCTGC 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 85, 94, 106
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 400
Sau3AI GATC 2 cut(s) 286, 297
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 377
SduI GDGCHC 2 cut(s) 8, 135
SetI ASST 6 cut(s) 30, 177, 201, 227, 242, 261
SinI GGWCC 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 53, 166
TaqI TCGA 3 cut(s) 120, 264, 331
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.