FvH4_4g25612

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000205
Physical Location & Seq
Forward (+)
27333588 .. 27335783
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25612.t2

Sequence Viewer

Length: 972 bp
ATGACAGCAACCCAAATCCCAGAAGTGGTTCTTGAATCCTCCAACGGCCGCAGAACCATGCCTGTGCTTGGATTCGGCACAGCATCCAACAATTTACAACCGGAGGTTTTGATAGAAGCTGTTCTTGAGGCCATCAAGCTTGGTTACCGACACTTCGACACTGCTTCCATTTACGGCTCCGAGCAGACTCTAGGACTAGCCATTGCCCAAGCACTCAAACTCGGCCTCGTGGCTTCTCGCGACGAACTCTTCATCACTTCCAAGCTTTGGCCTAACGATGCTCACCCCAACCTGGTTATTCCTGCTCTCAAGAAATCGCTTCAGAATCTTGAGTTGGAGTACCTTGATTTGTATCTGATTCACTGGCCCATCAGTGCCACGCCTGGGAAGTTGAGTCACGCACTAGAGGAGAAGGATCAAATGCCGATGGACTTCAAGGGTGTGTGGGCAGACATGGAGGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGCAATTTCTCTACCAAAAAGACTCAGAATTTGCTCTCCTTTGCTACTATTCCTCCGTCAGTCAATCAAGTTGAGATGAGTCCATTTTGGCAACAGAAGAAGCTCAGAGACTTCTGCAAGGCCAATGGTATAGTTGTGACTGCCTTCTCCCCATTGGGTGCCATAGGAACCAGTTGGGGCACCAATCATGTTCTCGAAAGCAAAGTGCTGAATGAGATAGCCGAGGCTCATGGAAAGACTGTTGCGCAGGTTTGTATTAGATGGGTTTATCAGGTAGGGGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTAAAGCAGAACGTGCAGGTGTTCGACTGGGAACTAACTAAAGAGGACCTTGAGAAGATCAATCAAATTCCACAGCGCAAAATGATGCCTCGAGAAGAGTTAGTTACGGCTACTGGACCATACAAGTCCCTTGATGACTTATGGGACGGAGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

324

Amino Acids

36.14

Weight (kDa)

5.94

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 250 4e-46 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 820
Acc16I TGCGCA 1 cut(s) 744
Acc36I ACCTGC 2 cut(s) 736, 820
AccB1I GGYRCC 2 cut(s) 656, 677
AccB7I CCANNNNNTGG 1 cut(s) 267
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 526, 879
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 384
AgsI TTSAA 2 cut(s) 35, 436
AjnI CCWGG 2 cut(s) 291, 382
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 6 cut(s) 119, 139, 265, 464, 601, 798
AluI AGCT 6 cut(s) 119, 139, 265, 464, 601, 798
Alw26I GTCTC 2 cut(s) 463, 600
AlwI GGATC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 7 cut(s) 46, 129, 223, 269, 365, 475, 618
ApoI RAATTY 2 cut(s) 526, 879
ArsI GACNNNNNNTTYG 2 cut(s) 511, 543
Asp700I GAANNNNTTC 2 cut(s) 27, 120
AspLEI GCGC 2 cut(s) 745, 891
AspS9I GGNCC 3 cut(s) 366, 859, 929
AsuHPI GGTGA 2 cut(s) 275, 472
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 2 cut(s) 859, 929
BaeGI GKGCMC 1 cut(s) 680
BanI GGYRCC 2 cut(s) 656, 677
BauI CACGAG 1 cut(s) 227
BccI CCATC 4 cut(s) 140, 377, 421, 753
BceAI ACGGC 3 cut(s) 61, 190, 936
BciT130I CCWGG 2 cut(s) 293, 384
BcoDI GTCTC 2 cut(s) 463, 600
BfaI CTAG 3 cut(s) 191, 197, 404
BfuAI ACCTGC 2 cut(s) 736, 820
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 2 cut(s) 293, 384
Bme18I GGWCC 2 cut(s) 859, 929
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 3 cut(s) 366, 859, 929
BmiI GGNNCC 4 cut(s) 178, 658, 667, 679
BmrFI CCNGG 2 cut(s) 293, 384
BmrI ACTGGG 1 cut(s) 850
BmsI GCATC 3 cut(s) 92, 268, 888
BmuI ACTGGG 1 cut(s) 850
BpuEI CTTGAG 4 cut(s) 146, 293, 350, 884
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 383, 720
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 384
Bse1I ACTGG 4 cut(s) 368, 669, 845, 931
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 2 cut(s) 293, 384
BseDI CCNNGG 2 cut(s) 383, 720
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 384
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 3 cut(s) 479, 536, 616
BseNI ACTGG 4 cut(s) 368, 669, 845, 931
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 680
BseX3I CGGCCG 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 7 cut(s) 48, 131, 225, 271, 367, 477, 620
BshNI GGYRCC 2 cut(s) 656, 677
BsiEI CGRYCG 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 5 cut(s) 25, 68, 267, 292, 384
BsmAI GTCTC 2 cut(s) 463, 600
BsmFI GGGAC 1 cut(s) 925
BsnI GGCC 7 cut(s) 48, 131, 225, 271, 367, 477, 620
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 2 cut(s) 415, 870
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 1 cut(s) 49
BspANI GGCC 7 cut(s) 48, 131, 225, 271, 367, 477, 620
BspCNI CTCAG 3 cut(s) 478, 535, 615
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 4 cut(s) 178, 658, 667, 679
BspMI ACCTGC 2 cut(s) 736, 820
BspPI GGATC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 788
BspT107I GGYRCC 2 cut(s) 656, 677
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 4 cut(s) 368, 669, 845, 931
BssECI CCNNGG 2 cut(s) 383, 720
BssMI GATC 2 cut(s) 415, 870
BssSI CACGAG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 293, 384
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 3 cut(s) 254, 788, 903
BstAPI GCANNNNNTGC 2 cut(s) 785, 826
BstDEI CTNAG 3 cut(s) 465, 522, 602
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 2 cut(s) 745, 891
BstKTI GATC 2 cut(s) 418, 873
BstMAI GTCTC 2 cut(s) 463, 600
BstMBI GATC 2 cut(s) 415, 870
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 785, 826
BstNI CCWGG 2 cut(s) 293, 384
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 291, 382
BstSLI GKGCMC 1 cut(s) 680
BstUI CGCG 1 cut(s) 240
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 7 cut(s) 48, 131, 225, 271, 367, 477, 620
BtsCI GGATG 1 cut(s) 83
BtsI GCAGTG 2 cut(s) 159, 795
BtsIMutI CAGTG 4 cut(s) 159, 361, 379, 795
BtuMI TCGCGA 1 cut(s) 240
BveI ACCTGC 2 cut(s) 736, 820
CfoI GCGC 2 cut(s) 745, 891
Cfr13I GGNCC 3 cut(s) 366, 859, 929
CsiI ACCWGGT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 340
CviAII CATG 4 cut(s) 58, 454, 686, 728
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 465, 522, 602
DpnI GATC 2 cut(s) 417, 872
DpnII GATC 2 cut(s) 415, 870
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 254, 788, 903
EarI CTCTTC 3 cut(s) 254, 788, 903
EclXI CGGCCG 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 859, 929
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 903
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 859
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 291, 382
FaeI CATG 4 cut(s) 61, 457, 689, 731
FaiI YATR 8 cut(s) 59, 455, 629, 662, 687, 729, 934, 955
FalI AAGNNNNNCTT 6 cut(s) 15, 47, 108, 140, 846, 878
FaqI GGGAC 1 cut(s) 925
FatI CATG 4 cut(s) 57, 453, 685, 727
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 3 cut(s) 191, 197, 404
FspI TGCGCA 1 cut(s) 744
GlaI GCGC 2 cut(s) 744, 890
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 7 cut(s) 48, 131, 225, 271, 367, 477, 620
HapII CCGG 1 cut(s) 101
HhaI GCGC 2 cut(s) 745, 891
Hin1II CATG 4 cut(s) 61, 457, 689, 731
Hin6I GCGC 2 cut(s) 743, 889
HinP1I GCGC 2 cut(s) 743, 889
HindIII AAGCTT 2 cut(s) 137, 263
HinfI GANTC 9 cut(s) 35, 72, 187, 325, 358, 394, 495, 520, 577
HpaII CCGG 1 cut(s) 101
HphI GGTGA 2 cut(s) 275, 472
Hpy188I TCNGA 6 cut(s) 181, 324, 357, 468, 525, 605
Hpy188III TCNNGA 7 cut(s) 32, 125, 239, 310, 329, 692, 905
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 406, 652
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 3 cut(s) 615, 788, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 785, 826
HpyF3I CTNAG 3 cut(s) 465, 522, 602
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 4 cut(s) 61, 457, 689, 731
HspAI GCGC 2 cut(s) 743, 889
Kzo9I GATC 2 cut(s) 415, 870
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 1 cut(s) 182
LweI GCATC 3 cut(s) 92, 268, 888
MabI ACCWGGT 1 cut(s) 291
MaeI CTAG 3 cut(s) 191, 197, 404
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 4 cut(s) 143, 395, 634, 916
MalI GATC 2 cut(s) 417, 872
MboI GATC 2 cut(s) 415, 870
MboII GAAGA 5 cut(s) 241, 607, 805, 880, 920
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 4 cut(s) 91, 502, 526, 879
MlyI GAGTC 4 cut(s) 181, 403, 514, 586
MmeI TCCRAC 3 cut(s) 66, 111, 315
MroXI GAANNNNTTC 2 cut(s) 27, 120
MseI TTAA 1 cut(s) 815
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 293, 384
MvaI CCWGG 2 cut(s) 293, 384
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 785, 826
NdeII GATC 2 cut(s) 415, 870
NlaIII CATG 4 cut(s) 61, 457, 689, 731
NlaIV GGNNCC 4 cut(s) 178, 658, 667, 679
NmeAIII GCCGAG 2 cut(s) 201, 745
NmuCI GTSAC 2 cut(s) 395, 634
NruI TCGCGA 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 744
PaeR7I CTCGAG 1 cut(s) 903
PaqCI CACCTGC 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 788
PdmI GAANNNNTTC 2 cut(s) 27, 120
PfeI GAWTC 5 cut(s) 35, 72, 325, 358, 495
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 4 cut(s) 181, 402, 514, 585
PpsI GAGTC 4 cut(s) 181, 402, 514, 585
PpuMI RGGWCCY 1 cut(s) 859
Psp5II RGGWCCY 1 cut(s) 859
Psp6I CCWGG 2 cut(s) 291, 382
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 2 cut(s) 291, 382
PspN4I GGNNCC 4 cut(s) 178, 658, 667, 679
PspPI GGNCC 3 cut(s) 366, 859, 929
PspPPI RGGWCCY 1 cut(s) 859
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 788
SaqAI TTAA 1 cut(s) 815
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 2 cut(s) 415, 870
Sau96I GGNCC 3 cut(s) 366, 859, 929
SchI GAGTC 4 cut(s) 181, 403, 514, 586
ScrFI CCNGG 2 cut(s) 293, 384
SduI GDGCHC 1 cut(s) 680
SexAI ACCWGGT 1 cut(s) 291
SfaNI GCATC 3 cut(s) 92, 268, 888
Sfr274I CTCGAG 1 cut(s) 903
SinI GGWCC 2 cut(s) 859, 929
SlaI CTCGAG 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 5 cut(s) 125, 308, 329, 863, 903
SmoI CTYRAG 5 cut(s) 125, 308, 329, 863, 903
Sse9I AATT 4 cut(s) 91, 502, 526, 879
SsiI CCGC 1 cut(s) 49
SspMI CTAG 3 cut(s) 191, 197, 404
StyD4I CCNGG 2 cut(s) 291, 382
TaaI ACNGT 1 cut(s) 739
TaiI ACGT 1 cut(s) 828
TaqI TCGA 4 cut(s) 156, 693, 837, 904
TasI AATT 4 cut(s) 91, 502, 526, 879
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 5 cut(s) 35, 72, 325, 358, 495
Tru1I TTAA 1 cut(s) 815
Tru9I TTAA 1 cut(s) 815
TscAI CASTG 4 cut(s) 166, 368, 379, 795
TseFI GTSAC 2 cut(s) 395, 634
Tsp45I GTSAC 2 cut(s) 395, 634
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 4 cut(s) 166, 368, 379, 795
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 859, 929
XapI RAATTY 2 cut(s) 526, 879
XhoI CTCGAG 1 cut(s) 903
XmnI GAANNNNTTC 2 cut(s) 27, 120
XspI CTAG 3 cut(s) 191, 197, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.