RLG00000005742

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
1372278 .. 1373982
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005742

Sequence Viewer

Length: 1017 bp
ATGGAGAACATAAGCAATATTCCGGAGTTGGCGCTAACCATCGTCCCAAGTAGTATTGCAAGTGATAAAAGTAGTATTCCGGTGCTAGGTTTAGGAACGGCTGCATATCCTTTTGTTGCCTCTGAAGCAGCGAAAGAAGCCATTCTCACTGCAATCCAAGTCGGCTACAGACATTTTGATTCCACTGCTGTTTACCAGACGGAGCAAGTTCTTGGTGAAGCCATTGCCGAAGCTCTTTCACTTGAGCTCGTCAAATCCCGGGATGAGCTTTTTTTACTTCCAAGCTTTGGTGCAACGATGCACACCATCACCTTGTCCTGCCTGCCATTCATAAAACACTCAAGTGCGAATCTAGGATTGGAATACCTAGATTTGTATCTCATTCATTGGCCTGTGAGTTTTGAGCCGGGAAGCTATGACATACCTGTTAAGAAAGAGGATCTTTTTCCTATGGACTTCAAGTCTGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGCAGTCAGCAATTTCTCATGCAAAAGGATTGAAATCTTGCTTTCCACTGCAATAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCGCTATGTCAGCAGAAAAAGCTGAGAGAGTTTTGTGAAAGAAAAGGTATAATAATCACTGCCTACTCTCCGTTGGGGGCAAAAGGGACACCGTGGGGAACAAATGGAGTTATGGAATGTGAGACTCTCAAACAAATTGCTGAAGCAAAAAGGAAAACTCTTGCTCAGCTTAAGTGTTTACATGCTAAATTTATGATTTCTATTCTTAAAGATCAAGGGGTGAGTGTGGTGGTGAAGAGCTTTAACAAGGAGAGGATTAAGGAAAATATGGACATATTTGAATGGGAGCTGCTGCCTGAGGAAGTTGACAAGATCAATCAAATTCCACAAAAGAGAGGATGCCAAGCATCCGACTTCGTTTCAGATAATGGCCCTTTCAAGTCTCTTGAAGAGTTTTGGGACGGAGAGATTTAA

Protein Analysis

339

Amino Acids

37.62

Weight (kDa)

5.19

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 29 - 309 6.6e-43 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 1 cut(s) 605
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 2 cut(s) 791, 924
AcuI CTGAAG 2 cut(s) 144, 765
AfiI CCNNNNNNNGG 3 cut(s) 86, 287, 508
AflII CTTAAG 1 cut(s) 773
AgsI TTSAA 5 cut(s) 460, 548, 884, 982, 992
AhdI GACNNNNNGTC 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AleI CACNNNNGTG 1 cut(s) 342
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 719, 990
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 258
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 3 cut(s) 389, 499, 973
ApeKI GCWGC 4 cut(s) 101, 128, 892, 895
ApoI RAATTY 2 cut(s) 791, 924
Asp700I GAANNNNTTC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 974
AsuC2I CCSGG 3 cut(s) 259, 260, 408
AsuHPI GGTGA 5 cut(s) 227, 301, 496, 835, 847
AvaI CYCGRG 1 cut(s) 258
AxyI CCTNAGG 1 cut(s) 900
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 88, 140, 879, 882
BccI CCATC 2 cut(s) 47, 314
BceAI ACGGC 1 cut(s) 114
BcnI CCSGG 3 cut(s) 259, 260, 408
BcoDI GTCTC 2 cut(s) 719, 990
BfaI CTAG 4 cut(s) 86, 353, 368, 497
BfmI CTRYAG 2 cut(s) 166, 579
BfoI RGCGCY 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 773
BisI GCNGC 4 cut(s) 102, 129, 893, 896
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 4 cut(s) 103, 130, 894, 897
Bme1390I CCNGG 3 cut(s) 259, 260, 408
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 974
BmrFI CCNGG 3 cut(s) 259, 260, 408
BmsI GCATC 3 cut(s) 288, 932, 959
Bpu1102I GCTNAGC 1 cut(s) 768
BpuEI CTTGAG 2 cut(s) 263, 325
BpuMI CCSGG 3 cut(s) 259, 260, 408
BsaBI GATNNNNATC 2 cut(s) 375, 548
BsaJI CCNNGG 3 cut(s) 258, 507, 695
BsaWI WCCGGW 2 cut(s) 22, 79
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 287, 508
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 2 cut(s) 222, 483
Bse8I GATNNNNATC 2 cut(s) 375, 548
BseAI TCCGGA 1 cut(s) 22
BseDI CCNNGG 3 cut(s) 258, 507, 695
BseGI GGATG 3 cut(s) 268, 947, 950
BseJI GATNNNNATC 2 cut(s) 375, 548
BseLI CCNNNNNNNGG 3 cut(s) 86, 287, 508
BseMI GCAATG 2 cut(s) 222, 483
BseMII CTCAG 3 cut(s) 617, 782, 891
BseXI GCAGC 4 cut(s) 88, 140, 879, 882
BshFI GGCC 3 cut(s) 391, 501, 975
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 4 cut(s) 23, 80, 259, 407
BslFI GGGAC 2 cut(s) 29, 703
BslI CCNNNNNNNGG 3 cut(s) 86, 287, 508
BsmAI GTCTC 2 cut(s) 719, 990
BsmFI GGGAC 2 cut(s) 29, 703
BsnI GGCC 3 cut(s) 391, 501, 975
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 249
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 439, 814, 915
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 1 cut(s) 605
BspANI GGCC 3 cut(s) 391, 501, 975
BspCNI CTCAG 3 cut(s) 618, 781, 892
BspEI TCCGGA 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 1 cut(s) 447
BspQI GCTCTTC 1 cut(s) 833
BspTI CTTAAG 1 cut(s) 773
BsrDI GCAATG 2 cut(s) 222, 483
BssECI CCNNGG 3 cut(s) 258, 507, 695
BssMI GATC 3 cut(s) 439, 814, 915
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 696
Bst6I CTCTTC 3 cut(s) 477, 833, 987
BstAFI CTTAAG 1 cut(s) 773
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 626, 768, 900
BstDSI CCRYGG 1 cut(s) 695
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 268, 947, 950
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 442, 817, 918
BstMAI GTCTC 2 cut(s) 719, 990
BstMBI GATC 3 cut(s) 439, 814, 915
BstMWI GCNNNNNNNGC 4 cut(s) 125, 137, 613, 622
BstNSI RCATGY 1 cut(s) 788
BstSCI CCNGG 3 cut(s) 257, 258, 406
BstSFI CTRYAG 2 cut(s) 166, 579
BstV1I GCAGC 4 cut(s) 88, 140, 879, 882
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 900
BsuRI GGCC 3 cut(s) 391, 501, 975
BtgI CCRYGG 1 cut(s) 695
BtsCI GGATG 3 cut(s) 268, 947, 950
BtsI GCAGTG 4 cut(s) 147, 183, 561, 660
BtsIMutI CAGTG 4 cut(s) 147, 183, 561, 660
Cac8I GCNNGC 1 cut(s) 323
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 974
Cfr9I CCCGGG 1 cut(s) 258
CviAII CATG 2 cut(s) 534, 785
DdeI CTNAG 3 cut(s) 626, 768, 900
DpnI GATC 3 cut(s) 441, 816, 917
DpnII GATC 3 cut(s) 439, 814, 915
DriI GACNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 3 cut(s) 477, 833, 987
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 3 cut(s) 477, 833, 987
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 507
Eco147I AGGCCT 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 144, 765
Eco81I CCTNAGG 1 cut(s) 900
Eco88I CYCGRG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 2 cut(s) 537, 788
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 29, 703
FatI CATG 2 cut(s) 533, 784
FauI CCCGC 1 cut(s) 612
Fnu4HI GCNGC 4 cut(s) 102, 129, 893, 896
FokI GGATG 3 cut(s) 275, 937, 954
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 102, 129, 893, 896
FspBI CTAG 4 cut(s) 86, 353, 368, 497
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 102, 129, 893, 896
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 3 cut(s) 391, 501, 975
HapII CCGG 4 cut(s) 23, 80, 259, 407
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 537, 788
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 2 cut(s) 586, 910
HindII GTYRAC 2 cut(s) 586, 910
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 3 cut(s) 179, 349, 727
HpaII CCGG 4 cut(s) 23, 80, 259, 407
HphI GGTGA 5 cut(s) 227, 301, 496, 835, 847
Hpy166II GTNNAC 4 cut(s) 193, 586, 782, 910
Hpy188I TCNGA 3 cut(s) 124, 955, 967
Hpy188III TCNNGA 2 cut(s) 23, 989
Hpy8I GTNNAC 4 cut(s) 193, 586, 782, 910
HpyCH4III ACNGT 1 cut(s) 696
HpyCH4V TGCA 8 cut(s) 59, 104, 152, 293, 301, 537, 566, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 137, 613, 622
HpyF3I CTNAG 3 cut(s) 626, 768, 900
Hsp92II CATG 2 cut(s) 537, 788
HspAI GCGC 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 439, 814, 915
LguI GCTCTTC 1 cut(s) 833
LmnI GCTCC 2 cut(s) 202, 889
Lsp1109I GCAGC 4 cut(s) 88, 140, 879, 882
LweI GCATC 3 cut(s) 288, 932, 959
MaeI CTAG 4 cut(s) 86, 353, 368, 497
MalI GATC 3 cut(s) 441, 816, 917
MboI GATC 3 cut(s) 439, 814, 915
MboII GAAGA 3 cut(s) 494, 850, 1004
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 4 cut(s) 526, 738, 791, 924
MlyI GAGTC 1 cut(s) 721
MmeI TCCRAC 1 cut(s) 978
MnlI CCTC 7 cut(s) 130, 430, 512, 585, 849, 895, 932
MroI TCCGGA 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 6 cut(s) 429, 774, 810, 846, 861, 1015
MslI CAYNNNNRTG 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 773
MspI CCGG 4 cut(s) 23, 80, 259, 407
MspR9I CCNGG 3 cut(s) 259, 260, 408
MwoI GCNNNNNNNGC 4 cut(s) 125, 137, 613, 622
NciI CCSGG 3 cut(s) 259, 260, 408
NdeII GATC 3 cut(s) 439, 814, 915
NlaIII CATG 2 cut(s) 537, 788
NspI RCATGY 1 cut(s) 788
OliI CACNNNNGTG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 833
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 179, 349
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 4 cut(s) 103, 130, 894, 897
PleI GAGTC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 721
Psp124BI GAGCTC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 974
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 833
SaqAI TTAA 6 cut(s) 429, 774, 810, 846, 861, 1015
SatI GCNGC 4 cut(s) 102, 129, 893, 896
Sau3AI GATC 3 cut(s) 439, 814, 915
Sau96I GGNCC 1 cut(s) 974
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 3 cut(s) 259, 260, 408
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 3 cut(s) 288, 932, 959
SfcI CTRYAG 2 cut(s) 166, 579
SmaI CCCGGG 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 3 cut(s) 242, 340, 773
SmoI CTYRAG 3 cut(s) 242, 340, 773
Sse9I AATT 4 cut(s) 526, 738, 791, 924
SseBI AGGCCT 1 cut(s) 501
SsiI CCGC 1 cut(s) 605
SspI AATATT 1 cut(s) 19
SspMI CTAG 4 cut(s) 86, 353, 368, 497
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 501
StyD4I CCNGG 3 cut(s) 257, 258, 406
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 696
TasI AATT 4 cut(s) 526, 738, 791, 924
TfiI GAWTC 2 cut(s) 179, 349
Tru1I TTAA 6 cut(s) 429, 774, 810, 846, 861, 1015
Tru9I TTAA 6 cut(s) 429, 774, 810, 846, 861, 1015
TscAI CASTG 4 cut(s) 154, 190, 568, 667
TseI GCWGC 4 cut(s) 101, 128, 892, 895
TspDTI ATGAA 3 cut(s) 319, 374, 614
TspGWI ACGGA 2 cut(s) 215, 663
TspMI CCCGGG 1 cut(s) 258
TspRI CASTG 4 cut(s) 154, 190, 568, 667
Van91I CCANNNNNTGG 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 773
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 2 cut(s) 791, 924
XceI RCATGY 1 cut(s) 788
XmaI CCCGGG 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 4 cut(s) 86, 353, 368, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.