Rh4DG054100

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000205
Physical Location & Seq
Forward (+)
8464473 .. 8465027
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG054100.1

Sequence Viewer

Length: 555 bp
ATGTCGATGGACTTCAAGGGCGTGTGGGCAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCTATTGGAATCAGCAATTTCTCTACCAAAAAGACTCAGAATTTGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAATCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGAATTCTGCAAAGCCAATGGTATAGTTGTGACTGCCTTCTCCCCATTGGGTGCCATAGGAACCAGTTGGGGTACCAATTATGTTCTCGAAAGCAAAGTGCTTAATGAAATCGCTGAGGCTCGGGGAAAGACTGTTGCTCAGGTCTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAAAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCGCAGAATGATATCTCGAGAAGAAGAGTTGGTTACGGCTACTGGACCATACAAGTCCCTTGATGAGTTATGGGACGGAGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

184

Amino Acids

20.88

Weight (kDa)

6.39

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 6 - 154 2.7e-30 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 2 cut(s) 236, 257
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 2 cut(s) 106, 188
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 2 cut(s) 16, 397
AluBI AGCT 3 cut(s) 44, 181, 378
AluI AGCT 3 cut(s) 44, 181, 378
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 2 cut(s) 306, 483
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 106, 188
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 306, 483
AvaII GGWCC 1 cut(s) 512
BanI GGYRCC 2 cut(s) 236, 257
BanII GRGCYC 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 2 cut(s) 306, 483
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 238, 247, 259
BmrI ACTGGG 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 430
Bpu10I CCTNAGC 2 cut(s) 300, 324
BpuEI CTTGAG 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bse1I ACTGG 3 cut(s) 249, 425, 514
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 5 cut(s) 59, 116, 196, 291, 338
BseNI ACTGG 3 cut(s) 249, 425, 514
BseXI GCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 428
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 2 cut(s) 236, 257
BsiHKCI CYCGRG 2 cut(s) 306, 483
BslFI GGGAC 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 1 cut(s) 57
BsoBI CYCGRG 2 cut(s) 306, 483
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 439, 450
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 5 cut(s) 58, 115, 195, 292, 337
BspLI GGNNCC 3 cut(s) 238, 247, 259
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 1 cut(s) 447
BspT107I GGYRCC 2 cut(s) 236, 257
BsrI ACTGG 3 cut(s) 249, 425, 514
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 439, 450
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 2 cut(s) 429, 486
BstAPI GCANNNNNTGC 2 cut(s) 365, 406
BstDEI CTNAG 5 cut(s) 45, 102, 182, 300, 324
BstDSI CCRYGG 1 cut(s) 33
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 442, 453
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 2 cut(s) 439, 450
BstMWI GCNNNNNNNGC 2 cut(s) 365, 406
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 400
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 34
CviJI RGCY 9 cut(s) 32, 44, 57, 159, 181, 200, 305, 378, 506
CviKI_1 RGCY 9 cut(s) 32, 44, 57, 159, 181, 200, 305, 378, 506
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 5 cut(s) 45, 102, 182, 300, 324
DpnI GATC 2 cut(s) 441, 452
DpnII GATC 2 cut(s) 439, 450
Eam1104I CTCTTC 2 cut(s) 429, 486
EarI CTCTTC 2 cut(s) 429, 486
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 2 cut(s) 306, 483
EcoRI GAATTC 1 cut(s) 188
EcoRV GATATC 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 37
FaiI YATR 6 cut(s) 35, 209, 242, 267, 517, 538
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 508
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 57
HhaI GCGC 1 cut(s) 471
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 2 cut(s) 75, 100
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 48, 105, 185
Hpy188III TCNNGA 4 cut(s) 272, 443, 483, 485
HpyAV CCTTC 2 cut(s) 144, 232
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 195, 333, 368, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 406
HpyF3I CTNAG 5 cut(s) 45, 102, 182, 300, 324
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 469
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 439, 450
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 6 cut(s) 262, 311, 335, 395, 406, 495
Lsp1109I GCAGC 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 214, 499
MalI GATC 2 cut(s) 441, 452
MboI GATC 2 cut(s) 439, 450
MboII GAAGA 5 cut(s) 50, 446, 460, 500, 503
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 4 cut(s) 82, 106, 188, 262
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 5 cut(s) 68, 141, 295, 384, 430
MseI TTAA 2 cut(s) 288, 553
MwoI GCNNNNNNNGC 2 cut(s) 365, 406
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 439, 450
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 3 cut(s) 238, 247, 259
NmuCI GTSAC 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 483
PaqCI CACCTGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 238, 247, 259
PspPI GGNCC 1 cut(s) 512
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 288, 553
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 439, 450
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 161
SetI ASST 7 cut(s) 46, 183, 330, 354, 380, 395, 414
Sfr274I CTCGAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 443, 483
SmoI CTYRAG 2 cut(s) 443, 483
Sse9I AATT 4 cut(s) 82, 106, 188, 262
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 5, 273, 417, 484
TasI AATT 4 cut(s) 82, 106, 188, 262
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 288, 553
Tru9I TTAA 2 cut(s) 288, 553
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 375
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 2 cut(s) 106, 188
XhoI CTCGAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.