FvH4_4g25620

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000205
Physical Location & Seq
Forward (+)
27340570 .. 27342973
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25620.t1

Sequence Viewer

Length: 867 bp
ATGGCAGCAACCCAAATCCCAGTGGTGGTTCTCGAATCCTCCAACGGCCGCAGGGCAATGCCTGTGCTTGGCTTCGGCACAGCATCAAACAATTTAGAACCAGAAGTTTTGATCGAAGCTGTTCTCGAAGCCATCAAGCTCGGTTACCGCCATTTCGACACGGCTTCCATTTACGGCTCCGAGCAGACTCTAGGTGAAGCAGTGGCCAAAGCTATTAGCCTTGGCCTTATTGCCTCTAGAGACGAATTGTTCATCACTTCAAAGCTATGGTGTAATGATGCTCATCCGGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCAGGTGTGTGGGCAGCCATGGAAGAATCACAGACTCGGCCTCACCAAATTCGTAGGAGTCAGCAATTTCTCTTCCAAAAAGATTGAAAATCTGCTCTCTTTTGCAACTATTCCTCCTTCTGTTAATCAAGTTGAGATAAGCCCATACTGGCAACAGAAGAAGCTGATAGACTTCTGCAAGGCTAATGGTGTAGTTTGGGACAAGTTGGGCAGCAGTCATGTTATGGAGAGCAAAGTGCTTCAGGAAATAGCTGAGGCTCGGGGGAAGACTATTGCTCAGGTTTGTATTAGGTGGGTGTACCAGGCAGGGGCAACAGTTACAGTTAAGAGCTACAACAAAGAGAGGTTGAAGCACAATGTGCAGGTGTTTGACTGGGAACTCACAGAAGAGGACCTAGACAAGATCAGTCAGATCCCACAGCACAGAATGATGCAGAGAGAAGAGTTTGTTTCGGCAAATGGGCCGTACAAGTCCCTTGAAGAACTTTGGGACGGAGAGATTTTACGGTTTATCGGTCTTCATCCCTTCATTTTGATAAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

289

Amino Acids

32.28

Weight (kDa)

7.06

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 110 8.7e-13 Aldo/keto reductase family
Aldo_ket_red PF00248 117 - 171 6.5e-09 Aldo/keto reductase family
Aldo_ket_red PF00248 183 - 245 6e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 2 cut(s) 49, 148
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 46, 204
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 2 cut(s) 305, 545
AdeI CACNNNGTG 1 cut(s) 679
AfaI GTAC 2 cut(s) 620, 788
AfiI CCNNNNNNNGG 3 cut(s) 25, 68, 628
AgsI TTSAA 4 cut(s) 261, 407, 670, 800
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 8 cut(s) 119, 139, 212, 265, 484, 572, 651, 863
AluI AGCT 8 cut(s) 119, 139, 212, 265, 484, 572, 651, 863
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 5 cut(s) 46, 204, 223, 358, 782
ApeKI GCWGC 3 cut(s) 5, 334, 531
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 712, 782
AsuHPI GGTGA 2 cut(s) 206, 355
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 712
BalI TGGCCA 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 593, 830
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 17, 346, 543
BccI CCATC 1 cut(s) 140
BceAI ACGGC 4 cut(s) 61, 177, 190, 769
BciT130I CCWGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 3 cut(s) 191, 237, 716
BfuAI ACCTGC 1 cut(s) 673
BisI GCNGC 4 cut(s) 6, 49, 335, 532
BlsI GCNGC 4 cut(s) 7, 50, 336, 533
Bme1390I CCNGG 1 cut(s) 623
Bme18I GGWCC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 2 cut(s) 712, 782
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 623
BmrI ACTGGG 2 cut(s) 14, 703
BmsI GCATC 3 cut(s) 92, 268, 741
BmuI ACTGGG 2 cut(s) 14, 703
BpiI GAAGAC 2 cut(s) 593, 830
Bpu10I CCTNAGC 2 cut(s) 573, 597
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 220, 338
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 68, 628
Bse1I ACTGG 3 cut(s) 20, 473, 698
Bse3DI GCAATG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 2 cut(s) 220, 338
BseGI GGATG 2 cut(s) 283, 841
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 25, 68, 628
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 564, 611
BseNI ACTGG 3 cut(s) 20, 473, 698
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 17, 346, 543
BsgI GTGCAG 1 cut(s) 701
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 5 cut(s) 48, 206, 225, 360, 784
BsiEI CGRYCG 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 3 cut(s) 533, 778, 824
BslI CCNNNNNNNGG 3 cut(s) 25, 68, 628
BsmAI GTCTC 1 cut(s) 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 3 cut(s) 533, 778, 824
BsnI GGCC 5 cut(s) 48, 206, 225, 360, 784
BsoBI CYCGRG 1 cut(s) 579
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 111, 723, 732
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 2 cut(s) 49, 148
BspANI GGCC 5 cut(s) 48, 206, 225, 360, 784
BspCNI CTCAG 2 cut(s) 565, 610
BspEI TCCGGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 3 cut(s) 20, 473, 698
BssECI CCNNGG 2 cut(s) 220, 338
BssMI GATC 3 cut(s) 111, 723, 732
BssT1I CCWWGG 2 cut(s) 220, 338
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 637, 643, 828
Bst6I CTCTTC 3 cut(s) 397, 702, 756
BstAPI GCANNNNNTGC 1 cut(s) 679
BstDEI CTNAG 3 cut(s) 573, 597, 864
BstDSI CCRYGG 1 cut(s) 338
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 283, 841
BstKTI GATC 3 cut(s) 114, 726, 735
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 111, 723, 732
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstNI CCWGG 1 cut(s) 623
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 621
BstV1I GCAGC 3 cut(s) 17, 346, 543
BstV2I GAAGAC 2 cut(s) 593, 830
BstX2I RGATCY 1 cut(s) 732
BstYI RGATCY 1 cut(s) 732
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 5 cut(s) 48, 206, 225, 360, 784
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 2 cut(s) 283, 841
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 27, 207
BveI ACCTGC 1 cut(s) 673
Cfr13I GGNCC 2 cut(s) 712, 782
Csp6I GTAC 2 cut(s) 619, 787
CviAII CATG 2 cut(s) 339, 539
CviQI GTAC 2 cut(s) 619, 787
DdeI CTNAG 3 cut(s) 573, 597, 864
DpnI GATC 3 cut(s) 113, 725, 734
DpnII GATC 3 cut(s) 111, 723, 732
DraIII CACNNNGTG 1 cut(s) 679
EaeI YGGCCR 2 cut(s) 46, 204
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 397, 702, 756
EarI CTCTTC 3 cut(s) 397, 702, 756
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 220, 338
Eco47I GGWCC 1 cut(s) 712
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 305, 545
Eco88I CYCGRG 1 cut(s) 579
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 220, 338
ErhI CCWWGG 2 cut(s) 220, 338
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 342, 542
FaiI YATR 5 cut(s) 268, 340, 466, 540, 545
FaqI GGGAC 3 cut(s) 533, 778, 824
FatI CATG 2 cut(s) 338, 538
Fnu4HI GCNGC 4 cut(s) 6, 49, 335, 532
FokI GGATG 2 cut(s) 270, 828
Fsp4HI GCNGC 4 cut(s) 6, 49, 335, 532
FspBI CTAG 3 cut(s) 191, 237, 716
GluI GCNGC 4 cut(s) 6, 49, 335, 532
HaeIII GGCC 5 cut(s) 48, 206, 225, 360, 784
HapII CCGG 1 cut(s) 287
Hin1II CATG 2 cut(s) 342, 542
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 5 cut(s) 35, 187, 346, 354, 378
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 206, 355
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 2 cut(s) 181, 732
Hpy188III TCNNGA 5 cut(s) 32, 125, 237, 287, 563
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 2 cut(s) 447, 856
HpyCH4III ACNGT 3 cut(s) 637, 643, 828
HpyCH4V TGCA 4 cut(s) 425, 498, 682, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 3 cut(s) 573, 597, 864
Hsp92II CATG 2 cut(s) 342, 542
Kpn2I TCCGGA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 111, 723, 732
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 3 cut(s) 17, 346, 543
LweI GCATC 3 cut(s) 92, 268, 741
MaeI CTAG 3 cut(s) 191, 237, 716
MaeIII GTNAC 2 cut(s) 143, 637
MalI GATC 3 cut(s) 113, 725, 734
MboI GATC 3 cut(s) 111, 723, 732
MboII GAAGA 8 cut(s) 355, 384, 490, 598, 719, 773, 812, 830
MflI RGATCY 1 cut(s) 732
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 4 cut(s) 91, 245, 368, 385
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 3 cut(s) 181, 348, 387
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 7 cut(s) 49, 244, 371, 444, 568, 657, 703
Mox20I TGGCCA 1 cut(s) 206
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 120
MscI TGGCCA 1 cut(s) 206
MseI TTAA 2 cut(s) 444, 645
Msp20I TGGCCA 1 cut(s) 206
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 623
MwoI GCNNNNNNNGC 1 cut(s) 679
NcoI CCATGG 1 cut(s) 338
NdeII GATC 3 cut(s) 111, 723, 732
NlaIII CATG 2 cut(s) 342, 542
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 336
PaqCI CACCTGC 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 35, 346
PflFI GACNNNGTC 1 cut(s) 293
PkrI GCNGC 4 cut(s) 7, 50, 336, 533
PleI GAGTC 3 cut(s) 181, 348, 386
PpsI GAGTC 3 cut(s) 181, 348, 386
PpuMI RGGWCCY 1 cut(s) 712
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 621
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 712, 782
PspPPI RGGWCCY 1 cut(s) 712
PsuI RGATCY 1 cut(s) 732
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 2 cut(s) 620, 788
RsaNI GTAC 2 cut(s) 619, 787
SaqAI TTAA 2 cut(s) 444, 645
SatI GCNGC 4 cut(s) 6, 49, 335, 532
Sau3AI GATC 3 cut(s) 111, 723, 732
Sau96I GGNCC 2 cut(s) 712, 782
SchI GAGTC 3 cut(s) 181, 348, 387
ScrFI CCNGG 1 cut(s) 623
SfaNI GCATC 3 cut(s) 92, 268, 741
SinI GGWCC 1 cut(s) 712
Sse9I AATT 4 cut(s) 91, 245, 368, 385
SsiI CCGC 2 cut(s) 49, 148
SspMI CTAG 3 cut(s) 191, 237, 716
StyD4I CCNGG 1 cut(s) 621
StyI CCWWGG 2 cut(s) 220, 338
TaaI ACNGT 3 cut(s) 637, 643, 828
TaqI TCGA 4 cut(s) 33, 114, 126, 156
TaqII GACCGA 1 cut(s) 824
TasI AATT 4 cut(s) 91, 245, 368, 385
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 35, 346
Tru1I TTAA 2 cut(s) 444, 645
Tru9I TTAA 2 cut(s) 444, 645
TscAI CASTG 2 cut(s) 27, 207
TseI GCWGC 3 cut(s) 5, 334, 531
TspDTI ATGAA 3 cut(s) 241, 830, 838
TspGWI ACGGA 1 cut(s) 828
TspRI CASTG 2 cut(s) 27, 207
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 1 cut(s) 368
XbaI TCTAGA 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 3 cut(s) 191, 237, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.